Rh1AG335100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017436
Physical Location & Seq
Reverse (-)
56925020 .. 56926893
1874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG335100.1

Sequence Viewer

Length: 399 bp
ATGACGGTCGGGAATGCGGGATATGGTTTCTCGTGTGTTGGGTCTGGTTCTGGGATGCAGATGGTGCATGGTGGTGGCTTTCGGCTGGTCGATTGTGGTGGTGTTTCCGGTGTAGGGCACGGCGGCAGTCCTTGCAGGGTAGCAGGCAGAGGCTTCGGTGGGCTTTACTTGAGATGGGATGGCACGTTTGGAGAAGTCGGCCGCCAGAGCTACGGGGAGTCGCTGGAGTACAGACCGGCGGTGGCGGGGTGCACAGGGATGCTCCTCCTTTGTCGGCTCGGGTTTGGGCCTGGGTTCAACCTTGGGCTGATGGGGCAGGGGCTTATTCCAAATAGGCAGGAGTTGACTTGGGCTTGGGCCTACGGGCTTGGGCTCAAATCCAGGCAATCTGGACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

13.61

Weight (kDa)

8.99

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 17, 123, 202, 239, 245
AcoI YGGCCR 1 cut(s) 199
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 1 cut(s) 298
AjnI CCWGG 2 cut(s) 289, 380
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
Alw21I GWGCWC 1 cut(s) 254
Alw44I GTGCAC 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 3 cut(s) 199, 287, 357
ApaLI GTGCAC 1 cut(s) 250
AspS9I GGNCC 3 cut(s) 287, 357, 392
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 1 cut(s) 392
BaeGI GKGCMC 2 cut(s) 120, 254
BanII GRGCYC 1 cut(s) 375
BauI CACGAG 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 254
BccI CCATC 4 cut(s) 55, 168, 173, 304
BceAI ACGGC 1 cut(s) 136
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 2 cut(s) 291, 382
BisI GCNGC 2 cut(s) 124, 202
BlsI GCNGC 2 cut(s) 125, 203
Bme1390I CCNGG 2 cut(s) 291, 382
Bme18I GGWCC 1 cut(s) 392
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 3 cut(s) 287, 357, 392
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 2 cut(s) 291, 382
BmsI GCATC 2 cut(s) 45, 249
BpmI CTGGAG 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 290, 301
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 235
BseBI CCWGG 2 cut(s) 291, 382
BseDI CCNNGG 2 cut(s) 290, 301
BseGI GGATG 3 cut(s) 60, 184, 264
BseLI CCNNNNNNNGG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 2 cut(s) 120, 254
BseX3I CGGCCG 1 cut(s) 199
Bsh1285I CGRYCG 2 cut(s) 9, 202
BshFI GGCC 3 cut(s) 201, 289, 359
BsiEI CGRYCG 2 cut(s) 9, 202
BsiHKAI GWGCWC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 2 cut(s) 108, 236
BslI CCNNNNNNNGG 1 cut(s) 114
BsmI GAATGC 1 cut(s) 19
BsnI GGCC 3 cut(s) 201, 289, 359
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 3 cut(s) 120, 254, 375
BspACI CCGC 5 cut(s) 17, 123, 202, 239, 245
BspANI GGCC 3 cut(s) 201, 289, 359
BspLI GGNNCC 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 290, 301
BssSI CACGAG 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 301
Bst2BI CACGAG 1 cut(s) 31
Bst2UI CCWGG 2 cut(s) 291, 382
Bst4CI ACNGT 1 cut(s) 7
BstAPI GCANNNNNTGC 2 cut(s) 64, 132
BstC8I GCNNGC 1 cut(s) 145
BstF5I GGATG 3 cut(s) 60, 184, 264
BstMCI CGRYCG 2 cut(s) 9, 202
BstMWI GCNNNNNNNGC 4 cut(s) 64, 132, 207, 313
BstNI CCWGG 2 cut(s) 291, 382
BstSCI CCNGG 2 cut(s) 289, 380
BstSLI GKGCMC 2 cut(s) 120, 254
BstZI CGGCCG 1 cut(s) 199
BsuRI GGCC 3 cut(s) 201, 289, 359
BtsCI GGATG 3 cut(s) 60, 184, 264
Cac8I GCNNGC 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 3 cut(s) 287, 357, 392
Csp6I GTAC 1 cut(s) 229
CviAII CATG 1 cut(s) 68
CviQI GTAC 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 199
EagI CGGCCG 1 cut(s) 199
EclXI CGGCCG 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 392
Eco52I CGGCCG 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 278
EcoRII CCWGG 2 cut(s) 289, 380
EcoT14I CCWWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 1 cut(s) 71
FaiI YATR 2 cut(s) 24, 69
FatI CATG 1 cut(s) 67
FauI CCCGC 2 cut(s) 10, 238
Fnu4HI GCNGC 2 cut(s) 124, 202
FokI GGATG 3 cut(s) 67, 191, 271
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 2 cut(s) 124, 202
GluI GCNGC 2 cut(s) 124, 202
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 3 cut(s) 201, 289, 359
HapII CCGG 2 cut(s) 108, 236
Hin1II CATG 1 cut(s) 71
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 1 cut(s) 218
HpaII CCGG 2 cut(s) 108, 236
Hpy166II GTNNAC 2 cut(s) 252, 345
Hpy188III TCNNGA 2 cut(s) 10, 390
Hpy8I GTNNAC 2 cut(s) 252, 345
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 4 cut(s) 58, 67, 135, 252
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 132, 207, 313
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 1 cut(s) 71
LmnI GCTCC 1 cut(s) 267
LweI GCATC 2 cut(s) 45, 249
MaeII ACGT 1 cut(s) 185
MhlI GDGCHC 3 cut(s) 120, 254, 375
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 2 cut(s) 143, 275
MslI CAYNNNNRTG 2 cut(s) 72, 257
MspI CCGG 2 cut(s) 108, 236
MspR9I CCNGG 2 cut(s) 291, 382
Mva1269I GAATGC 1 cut(s) 19
MvaI CCWGG 2 cut(s) 291, 382
MwoI GCNNNNNNNGC 4 cut(s) 64, 132, 207, 313
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 1 cut(s) 394
PctI GAATGC 1 cut(s) 19
PkrI GCNGC 2 cut(s) 125, 203
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 289, 380
PspGI CCWGG 2 cut(s) 289, 380
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 3 cut(s) 287, 357, 392
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 2 cut(s) 72, 257
SatI GCNGC 2 cut(s) 124, 202
Sau96I GGNCC 3 cut(s) 287, 357, 392
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 2 cut(s) 291, 382
SduI GDGCHC 3 cut(s) 120, 254, 375
SetI ASST 3 cut(s) 188, 212, 303
SfaNI GCATC 2 cut(s) 45, 249
SinI GGWCC 1 cut(s) 392
SmiMI CAYNNNNRTG 2 cut(s) 72, 257
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
SsiI CCGC 5 cut(s) 17, 123, 202, 239, 245
StyD4I CCNGG 2 cut(s) 289, 380
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 188
TaqI TCGA 1 cut(s) 90
TatI WGTACW 1 cut(s) 228
TauI GCSGC 2 cut(s) 126, 204
VneI GTGCAC 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.