Rh4CG083900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0017436
Physical Location & Seq
Forward (+)
15166134 .. 15176590
10457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG083900.1

Sequence Viewer

Length: 273 bp
ATGACGGTGACGGCGGCGAAGGAGCAGCGGTGCAGAGAGGCTCCTCCTCTATTTGCTTGGGGTTGGGACTGGGTCTTTGGGCCTGGGATCACTCTTGGGCATATGGGGCAGGGGCCTGGACTCAATCTTGGGTTGATGGACCTTAACCAGTTCAAAATGAAAGTAGCTGTGATGGTGGCGCAGAACGGAGAAATAGTATGTAGAGTTGATGCTTGTAGGCAGCAGATGATTAGATTCTTTGAGACGAGCTCAAACGAGACGAACATGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.05

Weight (kDa)

6.54

Isoelectric Point (pI)

24.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 14, 28
AclWI GGATC 1 cut(s) 95
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 2 cut(s) 82, 115
AluBI AGCT 2 cut(s) 167, 249
AluI AGCT 2 cut(s) 167, 249
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 2 cut(s) 236, 251
AlwI GGATC 1 cut(s) 95
AoxI GGCC 2 cut(s) 80, 113
ApeKI GCWGC 2 cut(s) 25, 220
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 3 cut(s) 80, 113, 139
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 37, 232
BccI CCATC 2 cut(s) 130, 166
BceAI ACGGC 1 cut(s) 27
BciT130I CCWGG 2 cut(s) 84, 117
BcoDI GTCTC 2 cut(s) 236, 251
BisI GCNGC 3 cut(s) 15, 26, 221
BlsI GCNGC 3 cut(s) 16, 27, 222
Bme1390I CCNGG 2 cut(s) 84, 117
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 3 cut(s) 80, 113, 139
BmiI GGNNCC 2 cut(s) 42, 114
BmrFI CCNGG 2 cut(s) 84, 117
BmrI ACTGGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 79
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BsaJI CCNNGG 1 cut(s) 83
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 180, 210
Bse1I ACTGG 2 cut(s) 74, 148
BseBI CCWGG 2 cut(s) 84, 117
BseDI CCNNGG 1 cut(s) 83
BseNI ACTGG 2 cut(s) 74, 148
BseRI GAGGAG 2 cut(s) 33, 36
BseXI GCAGC 2 cut(s) 37, 232
BsgI GTGCAG 1 cut(s) 52
BshFI GGCC 2 cut(s) 82, 115
BsiHKAI GWGCWC 1 cut(s) 251
BslFI GGGAC 1 cut(s) 80
BsmAI GTCTC 2 cut(s) 236, 251
BsmBI CGTCTC 2 cut(s) 236, 251
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 2 cut(s) 82, 115
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 2 cut(s) 14, 28
BspANI GGCC 2 cut(s) 82, 115
BspLI GGNNCC 2 cut(s) 42, 114
BspPI GGATC 1 cut(s) 95
BsrI ACTGG 2 cut(s) 74, 148
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 84, 117
Bst4CI ACNGT 1 cut(s) 7
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 2 cut(s) 236, 251
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 2 cut(s) 84, 117
BstSCI CCNGG 2 cut(s) 82, 115
BstV1I GCAGC 2 cut(s) 37, 232
BsuRI GGCC 2 cut(s) 82, 115
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 3 cut(s) 80, 113, 139
CviAII CATG 1 cut(s) 265
CviJI RGCY 5 cut(s) 41, 82, 115, 167, 249
CviKI_1 RGCY 5 cut(s) 41, 82, 115, 167, 249
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Ecl136II GAGCTC 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 82, 115
EcoT38I GRGCYC 1 cut(s) 251
Esp3I CGTCTC 2 cut(s) 236, 251
FaeI CATG 1 cut(s) 268
FaiI YATR 4 cut(s) 102, 104, 199, 266
FaqI GGGAC 1 cut(s) 80
FatI CATG 1 cut(s) 264
FauNDI CATATG 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 15, 26, 221
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 3 cut(s) 15, 26, 221
GlaI GCGC 1 cut(s) 180
GluI GCNGC 3 cut(s) 15, 26, 221
HaeIII GGCC 2 cut(s) 82, 115
HhaI GCGC 1 cut(s) 181
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 2 cut(s) 120, 234
HphI GGTGA 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 2 cut(s) 22, 46
LpnPI CCDG 7 cut(s) 55, 69, 95, 96, 102, 129, 161
Lsp1109I GCAGC 2 cut(s) 37, 232
LweI GCATC 1 cut(s) 199
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 251
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 3 cut(s) 31, 54, 57
MseI TTAA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 28
MspR9I CCNGG 2 cut(s) 84, 117
MvaI CCWGG 2 cut(s) 84, 117
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeI CATATG 1 cut(s) 102
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 2 cut(s) 42, 114
NmuCI GTSAC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 234
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 16, 27, 222
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 251
Psp6I CCWGG 2 cut(s) 82, 115
PspGI CCWGG 2 cut(s) 82, 115
PspN4I GGNNCC 2 cut(s) 42, 114
PspPI GGNCC 3 cut(s) 80, 113, 139
PsyI GACNNNGTC 1 cut(s) 71
SacI GAGCTC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 3 cut(s) 15, 26, 221
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 3 cut(s) 80, 113, 139
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 84, 117
SduI GDGCHC 1 cut(s) 251
SetI ASST 3 cut(s) 144, 169, 251
SfaNI GCATC 1 cut(s) 199
SinI GGWCC 1 cut(s) 139
SsiI CCGC 2 cut(s) 14, 28
SstI GAGCTC 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 82, 115
TaaI ACNGT 1 cut(s) 7
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 2 cut(s) 25, 220
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 201
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.