Rh1AG089400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017436
Physical Location & Seq
Forward (+)
15306499 .. 15310864
4366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG089400.1

Sequence Viewer

Length: 255 bp
ATGACAGTGACGGTGGCGAAGGAGCAGCGGTGCAGAGAGGCTCCTCCTCTATTTGCTTGGGGTTGGGACTGGGTCTTTGGGCCTGGGATCACTCTTGGGCTGATGGGGCAGGGGCCTGGGCTCAATCTTGGGTTGATGGACCTACTGGTTTGCATCGAGTCAAATGACCTCATATGCCGTCAAAACTTAATGAACAAAGGCTACAAGGACAAGCAATCAACGCATCCGGGAGACTTTATCATTATGTTGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.35

Weight (kDa)

5.61

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 28
AclWI GGATC 1 cut(s) 95
AjnI CCWGG 2 cut(s) 82, 115
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 1 cut(s) 95
AoxI GGCC 2 cut(s) 80, 113
ApeKI GCWGC 1 cut(s) 25
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspS9I GGNCC 3 cut(s) 80, 113, 139
AsuC2I CCSGG 1 cut(s) 228
AvaII GGWCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 37
BccI CCATC 2 cut(s) 97, 130
BceAI ACGGC 1 cut(s) 162
BciT130I CCWGG 2 cut(s) 84, 117
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 253
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 3 cut(s) 84, 117, 228
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 3 cut(s) 80, 113, 139
BmiI GGNNCC 2 cut(s) 42, 114
BmrFI CCNGG 3 cut(s) 84, 117, 228
BmrI ACTGGG 1 cut(s) 79
BmsI GCATC 2 cut(s) 162, 232
BmuI ACTGGG 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 83, 116
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bse1I ACTGG 2 cut(s) 74, 150
BseBI CCWGG 2 cut(s) 84, 117
BseDI CCNNGG 2 cut(s) 83, 116
BseGI GGATG 1 cut(s) 223
BseNI ACTGG 2 cut(s) 74, 150
BseRI GAGGAG 2 cut(s) 33, 36
BseXI GCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 52
BshFI GGCC 2 cut(s) 82, 115
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 2 cut(s) 82, 115
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 1 cut(s) 28
BspANI GGCC 2 cut(s) 82, 115
BspLI GGNNCC 2 cut(s) 42, 114
BspPI GGATC 1 cut(s) 95
BsrI ACTGG 2 cut(s) 74, 150
BssECI CCNNGG 2 cut(s) 83, 116
BssMI GATC 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 84, 117
Bst4CI ACNGT 2 cut(s) 7, 13
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 106, 220
BstNI CCWGG 2 cut(s) 84, 117
BstSCI CCNGG 3 cut(s) 82, 115, 226
BstV1I GCAGC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 82, 115
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 12
Cfr13I GGNCC 3 cut(s) 80, 113, 139
CviJI RGCY 6 cut(s) 41, 82, 100, 115, 121, 201
CviKI_1 RGCY 6 cut(s) 41, 82, 100, 115, 121, 201
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 82, 115
EcoT38I GRGCYC 1 cut(s) 123
FaiI YATR 3 cut(s) 173, 175, 245
FaqI GGGAC 1 cut(s) 80
FauNDI CATATG 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 1 cut(s) 210
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 1 cut(s) 253
GluI GCNGC 1 cut(s) 26
HaeIII GGCC 2 cut(s) 82, 115
HapII CCGG 1 cut(s) 227
HinfI GANTC 1 cut(s) 158
HpaII CCGG 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 2 cut(s) 7, 13
HpyCH4V TGCA 2 cut(s) 33, 153
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 220
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 2 cut(s) 22, 46
LpnPI CCDG 8 cut(s) 55, 69, 95, 96, 102, 129, 131, 240
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 2 cut(s) 162, 232
MaeI CTAG 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 123
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 4 cut(s) 31, 54, 57, 179
MseI TTAA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 3 cut(s) 84, 117, 228
MvaI CCWGG 2 cut(s) 84, 117
MwoI GCNNNNNNNGC 2 cut(s) 106, 220
NciI CCSGG 1 cut(s) 228
NdeI CATATG 1 cut(s) 173
NdeII GATC 1 cut(s) 87
NlaIV GGNNCC 2 cut(s) 42, 114
NmuCI GTSAC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 226
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 82, 115
PspGI CCWGG 2 cut(s) 82, 115
PspN4I GGNNCC 2 cut(s) 42, 114
PspPI GGNCC 3 cut(s) 80, 113, 139
PsrI GAACNNNNNNTAC 2 cut(s) 185, 217
PsyI GACNNNGTC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 3 cut(s) 80, 113, 139
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 3 cut(s) 84, 117, 228
SduI GDGCHC 1 cut(s) 123
SetI ASST 2 cut(s) 144, 171
SfaNI GCATC 2 cut(s) 162, 232
SinI GGWCC 1 cut(s) 139
SsiI CCGC 1 cut(s) 28
SspMI CTAG 1 cut(s) 253
StyD4I CCNGG 3 cut(s) 82, 115, 226
TaaI ACNGT 2 cut(s) 7, 13
TaqI TCGA 1 cut(s) 156
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 12
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 139
XspI CTAG 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.