Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002851

Physical Location & Seq

Genomic Coordinates Forward (+)

265459 .. 271297

Gene Structure 5839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28201

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2334 bp

ATGCTTGCTGGAGTCAAGTTCATACCTCGAGACCAGATTGATAAAGATGAGAATTTGAATGCTTCTGCAAAACAGAAACAGAAGAAGAGCTCAGGTAATAAGAAGGGTAAGCGTAGGAGCGAAAGGAGTTCTGGATATAGTAGTTCGGATGGCGAAGAGCTTGAGAGAATAAAGAAGGCATCTAAAAAAAAGTGGTATTCATCGGATGAGTACTCATCACCATCATATTCTTCGGGAAATGAAAGTGAGGAAAGTTCTGACCGAGATAGAAAGAAGCGTCTGAATAAGAAAAAGAAGAGATCGAGTAGCAGTAGAAAAGATTATAGTTCAGAAGATCTTTCATCTGCTTCTGATAGTTATTCTGATAAGAAAGACAAGCGCAAGAAGAGAAGCCGAAAAGATGGAAAGAAAAAGAGTAGAGATAGAAGTCAGGGTGGCATGGAGGATGATGAATATTCTGACGGTGGTAGAGGAACTAGTACGGTGAAAGATGGGGAAATTGTGAGGAAGAAAATTGGGTTGGAGTGGATGCTTAGACCTGAAGGAAAAGAGAGAACACCTACTATTACTGTCGAGGACCAACCAAAAGAAACTCCAGTTGAAGAGAAGGTCAATCCTAGGGAATTAAATCCATATTTTAAGGATGAGGGAAGTGGTTATCCAGAAGACAATGATGAACCTAAAGCTGGTGGGGACCGACTTTTACCTTCCTCTGTTGTTGGGGATGGAGGTGCAAGTTGGAGACTTAAAGCATTGAAGCGGGCAAAAGAGCAAGCAACTCGAGAAGGACAAGGGCTCCACGAGGTTGTTGAGGAGCGTTGGGGTTCTCTTGGTAAACTAGCAGCCTCTGTGGGATCAAATAAAGCAGCCCCATCTCGTGCTCATCTACATGCAATAAAAAGTAGAAAGAAAGGGGTGAGTGAGGAACAGCAGCCAGGTTCCAACAATGACATAGATAAGAAGGACACTAGCCGGCCCTACCTAAAGGATGTATCTATCCAACATCCCAAAATGAAGGAGCCTAAAGTTCAAGGTTCTTTATCCTGGGGAAAGCAAAAGGGTCAAAAGAGCCGGGATGTCTCTACCAAGGACTCTGCTCTTCTAGCGGATGCAGTGTCTAGCATAAACAGGTTTTCCAATGATGGAAGCTTCCTGAGTGAACTTATTCGTAATCAGACTAATGATTCTAGGAATCCTGTTAACGAAAATGTACTTGACACGAGAAAACCCAGCGAAACCAGTGCTGCTGCCTCTAAGGGTGAACTGAGTGCGAACCAGTTGGCAGCTAAGGCTTTTCAGCTTCGTATGAAGGGGAAGCATGAAGAAGCTGAAGAACTTCTGCAAGAAATAGAAAACCTAAAGGCAAAGCAGGGTGGTGGAGATAATCCGATGAGACCACAATATGAAAGAGGTACAAACAGATATGCCATGCAGGATATGTCTCTTCGTCAAAAGAAAAAGGATGATGATGGTGACATGCATCTAGCCCAAAAGATAATGCAGAACAAAAAATATAGTATATCCGGTCAGGCAGATGATGAATACGACTTTGATGATGGTCCAATCAGAAAGTCTAAAAAGAAGCAGGGAAGTGATGATCGCAAGGTAACCCAGAAGAATACATTTGCAAATCGTTTCTCCATTCAGCAAGAACGCTGCCTTTTCTGCTTTGAAAATCCAAAGAGACCAGCGCATCTGGTTGTGGCAATTGGAAATTATTCATATTTGATGTTGCGACAGCAGAAGCCTGTTGTGGATGGTCATTGCTACATTTTGCCGATGCAGCATGGACCAGCCACAAGAACTCTTGATGATCATGTGTGGGAAGAAATTCGAAATTTCAAGAAATGCCTTATTATGATGTTTGCAAAGCAAGAGAAGGATGTTGTCTTCCTTGAAACAGTGATGGGGTTAGCTCAACAGCGCCGCCACTGTATAATTGAGTGTATTCCTTTGCCCCAGGATATAGCTAAAGACGCTCCCTTATATTTTAAAAAGGCAATTGATGAAGCTGAAGATGAGTGGAGCCAACACAATGCCAAAAAACTTATTGATACAAGTGTAAAGGGATTGCGAGGTTCAGTTCCAGCTAATTTTCCATATTTCCACGTGGAGTTTGGTTTAAAGAAGGGGTTTGTCCACGTGATTGATGATGAAACACAGTTCAATAGCAGCCTTGGCCTGAATGTTATAAGAGGCATGCTAGAGTTGCCTGCAGAAGACATGCATCGCCGTGGACGATATGAACCAGTGGAAGCGCAAAAGCAAGCCGTTAAGAGGTTTGATCAAGATTGGGCGCCGTTTGACTGGACAAAACAGCTTCATCAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CwfJ_C_1 CwfJ_C_2

Protein Analysis

777

Amino Acids

88.08

Weight (kDa)

9.31

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CwfJ_C_1	PF04677	545 - 665	7.7e-41	Protein similar to CwfJ C-terminal
CwfJ_C_2	PF04676	674 - 771	6e-27	Protein similar to CwfJ C-terminus 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56290
fragaria_vesca	FvH4_4g02820 FvH4_4g02820 FvH4_4g02820 FvH4_4g02820
malus_domestica	MD13G1208100.v1.1 MD16G1209600.v1.1
prunus_persica	Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1
pyrus_communis	pycom13g18020 pycom16g17690
rosa_chinensis	RchiOBHm_Chr4g0390791 RchiOBHm_Chr5g0000461
rosa_laevigata	RLG00000009911 RLG00000030869
rosa_multiflora	Rmu_sc0000171.1_g000026 Rmu_sc0001380.1_g000027 Rmu_sc0003949.1_g000006
rosa_roxburghii	Rroxscaffold_1G00075700 Rroxscaffold_5G00336660 Rroxscaffold_5G00336680 Rroxscaffold_5G00336690
rosa_rugosa	Rorug03G0331500 Rorug03G0331500 Rorug04G0383800
rosa_samantha	Rh4AG033200 Rh4BG027000 Rh4CG036800 Rh4DG030000 Rh5AG003800 Rh5BG005000 Rh5CG004100 Rh5DG004000
rosa_wichuraiana	Rw5G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2192
AccB1I	GGYRCC	1 cut(s)	2296
AciI	CCGC	3 cut(s)	760, 1106, 1927
AclWI	GGATC	1 cut(s)	862
AcsI	RAATTY	3 cut(s)	52, 1830, 1837
AcuI	CTGAAG	3 cut(s)	561, 1350, 2034
AcvI	CACGTG	2 cut(s)	2110, 2143
AcyI	GRCGYC	1 cut(s)	2297
AfaI	GTAC	4 cut(s)	212, 481, 1212, 1414
AfiI	CCNNNNNNNGG	2 cut(s)	686, 2277
AgsI	TTSAA	8 cut(s)	58, 602, 757, 1031, 1673, 1843, 1898, 2167
AhlI	ACTAGT	1 cut(s)	476
AjnI	CCWGG	3 cut(s)	934, 1043, 1959
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
Alw21I	GWGCWC	2 cut(s)	92, 883
Alw26I	GTCTC	6 cut(s)	24, 736, 1084, 1387, 1446, 1678
AlwI	GGATC	1 cut(s)	862
AlwNI	CAGNNNCTG	1 cut(s)	848
Ama87I	CYCGRG	2 cut(s)	27, 780
AoxI	GGCC	2 cut(s)	974, 2179
ApeKI	GCWGC	9 cut(s)	842, 866, 931, 1244, 1247, 1283, 1656, 1783, 2172
ApoI	RAATTY	3 cut(s)	52, 1830, 1837
Asp700I	GAANNNNTTC	4 cut(s)	1164, 1335, 1717, 1830
AspA2I	CCTAGG	1 cut(s)	617
AspLEI	GCGC	5 cut(s)	381, 1693, 1926, 2260, 2299
AspS9I	GGNCC	5 cut(s)	577, 694, 975, 1559, 1790
AsuC2I	CCSGG	1 cut(s)	1073
AsuHPI	GGTGA	5 cut(s)	210, 496, 928, 1271, 1484
AsuII	TTCGAA	1 cut(s)	1834
AvaI	CYCGRG	2 cut(s)	27, 780
AvaII	GGWCC	4 cut(s)	577, 694, 1559, 1790
AvrII	CCTAGG	1 cut(s)	617
BaeI	ACNNNNGTAYC	2 cut(s)	2046, 2079
BanI	GGYRCC	1 cut(s)	2296
BanII	GRGCYC	2 cut(s)	92, 798
BauI	CACGAG	3 cut(s)	800, 876, 1219
BbrPI	CACGTG	2 cut(s)	2110, 2143
BbsI	GAAGAC	3 cut(s)	672, 1882, 2226
Bbv12I	GWGCWC	2 cut(s)	92, 883
BbvI	GCAGC	9 cut(s)	854, 878, 943, 1231, 1234, 1295, 1643, 1795, 2184
BceAI	ACGGC	3 cut(s)	2217, 2255, 2284
BcgI	CGANNNNNNTGC	4 cut(s)	761, 795, 1223, 1257
BciT130I	CCWGG	3 cut(s)	936, 1045, 1961
BclI	TGATCA	2 cut(s)	1813, 2284
BcnI	CCSGG	1 cut(s)	1073
BcoDI	GTCTC	6 cut(s)	24, 736, 1084, 1387, 1446, 1678
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	9 cut(s)	477, 618, 839, 969, 1103, 1119, 1188, 1484, 2204
BfmI	CTRYAG	1 cut(s)	2214
BfoI	RGCGCY	2 cut(s)	1927, 2300
BglII	AGATCT	1 cut(s)	334
BlnI	CCTAGG	1 cut(s)	617
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	4 cut(s)	936, 1045, 1073, 1961
Bme18I	GGWCC	4 cut(s)	577, 694, 1559, 1790
BmeT110I	CYCGRG	2 cut(s)	27, 780
BmgT120I	GGNCC	5 cut(s)	577, 694, 975, 1559, 1790
BmiI	GGNNCC	6 cut(s)	695, 797, 940, 1020, 2027, 2298
BmrFI	CCNGG	4 cut(s)	936, 1045, 1073, 1961
BmsI	GCATC	7 cut(s)	188, 519, 1099, 1489, 1702, 1770, 2236
BpiI	GAAGAC	3 cut(s)	672, 1882, 2226
BpmI	CTGGAG	2 cut(s)	30, 579
Bpu10I	CCTNAGC	2 cut(s)	91, 1287
Bpu14I	TTCGAA	1 cut(s)	1834
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	1073
BsaAI	YACGTR	2 cut(s)	2110, 2143
BsaHI	GRCGYC	1 cut(s)	2297
BsaI	GGTCTC	3 cut(s)	24, 1387, 1678
BsaJI	CCNNGG	6 cut(s)	617, 1044, 1086, 1959, 2176, 2233
BsaWI	WCCGGW	1 cut(s)	1523
BsaXI	ACNNNNNCTCC	2 cut(s)	780, 810
Bsc4I	CCNNNNNNNGG	2 cut(s)	686, 2277
Bse118I	RCCGGY	1 cut(s)	972
Bse1I	ACTGG	5 cut(s)	596, 1239, 1276, 2249, 2312
Bse3DI	GCAATG	1 cut(s)	1762
BseBI	CCWGG	3 cut(s)	936, 1045, 1961
BseDI	CCNNGG	6 cut(s)	617, 1044, 1086, 1959, 2176, 2233
BseLI	CCNNNNNNNGG	2 cut(s)	686, 2277
BseMI	GCAATG	1 cut(s)	1762
BseMII	CTCAG	3 cut(s)	105, 1145, 1256
BseNI	ACTGG	5 cut(s)	596, 1239, 1276, 2249, 2312
BseRI	GAGGAG	1 cut(s)	827
BseXI	GCAGC	9 cut(s)	854, 878, 943, 1231, 1234, 1295, 1643, 1795, 2184
BseYI	CCCAGC	1 cut(s)	1229
BshFI	GGCC	2 cut(s)	976, 2181
BshNI	GGYRCC	1 cut(s)	2296
BsiHKAI	GWGCWC	2 cut(s)	92, 883
BsiHKCI	CYCGRG	2 cut(s)	27, 780
BsiSI	CCGG	3 cut(s)	973, 1072, 1524
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	2 cut(s)	686, 2277
BsmAI	GTCTC	6 cut(s)	24, 736, 1084, 1387, 1446, 1678
BsmFI	GGGAC	1 cut(s)	707
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	976, 2181
Bso31I	GGTCTC	3 cut(s)	24, 1387, 1678
BsoBI	CYCGRG	2 cut(s)	27, 780
Bsp119I	TTCGAA	1 cut(s)	1834
Bsp1286I	GDGCHC	3 cut(s)	92, 798, 883
Bsp143I	GATC	6 cut(s)	299, 334, 854, 1597, 1813, 2284
BspACI	CCGC	3 cut(s)	760, 1106, 1927
BspANI	GGCC	2 cut(s)	976, 2181
BspCNI	CTCAG	3 cut(s)	104, 1146, 1257
BspLI	GGNNCC	6 cut(s)	695, 797, 940, 1020, 2027, 2298
BspMAI	CTGCAG	1 cut(s)	2218
BspPI	GGATC	1 cut(s)	862
BspQI	GCTCTTC	3 cut(s)	80, 150, 1104
BspT104I	TTCGAA	1 cut(s)	1834
BspT107I	GGYRCC	1 cut(s)	2296
BspTNI	GGTCTC	3 cut(s)	24, 1387, 1678
BsrDI	GCAATG	1 cut(s)	1762
BsrFI	RCCGGY	1 cut(s)	972
BsrI	ACTGG	5 cut(s)	596, 1239, 1276, 2249, 2312
BssAI	RCCGGY	1 cut(s)	972
BssECI	CCNNGG	6 cut(s)	617, 1044, 1086, 1959, 2176, 2233
BssMI	GATC	6 cut(s)	299, 334, 854, 1597, 1813, 2284
BssNI	GRCGYC	1 cut(s)	2297
BssSI	CACGAG	3 cut(s)	800, 876, 1219
BssT1I	CCWWGG	3 cut(s)	617, 1086, 2176
Bst2BI	CACGAG	3 cut(s)	800, 876, 1219
Bst2UI	CCWGG	3 cut(s)	936, 1045, 1961
Bst4CI	ACNGT	6 cut(s)	464, 484, 571, 1903, 1934, 2163
Bst6I	CTCTTC	7 cut(s)	80, 150, 290, 380, 597, 1104, 1449
BstACI	GRCGYC	1 cut(s)	2297
BstBAI	YACGTR	2 cut(s)	2110, 2143
BstBI	TTCGAA	1 cut(s)	1834
BstC8I	GCNNGC	7 cut(s)	6, 762, 774, 974, 2201, 2214, 2268
BstDEI	CTNAG	6 cut(s)	91, 533, 1154, 1254, 1265, 1287
BstDSI	CCRYGG	1 cut(s)	2233
BstEII	GGTNACC	1 cut(s)	1606
BstH2I	RGCGCY	2 cut(s)	1927, 2300
BstHHI	GCGC	5 cut(s)	381, 1693, 1926, 2260, 2299
BstKTI	GATC	6 cut(s)	302, 337, 857, 1600, 1816, 2287
BstMAI	GTCTC	6 cut(s)	24, 736, 1084, 1387, 1446, 1678
BstMBI	GATC	6 cut(s)	299, 334, 854, 1597, 1813, 2284
BstMWI	GCNNNNNNNGC	7 cut(s)	1103, 1289, 1665, 1783, 1976, 2178, 2209
BstNI	CCWGG	3 cut(s)	936, 1045, 1961
BstNSI	RCATGY	4 cut(s)	893, 1480, 2203, 2227
BstPI	GGTNACC	1 cut(s)	1606
BstSCI	CCNGG	4 cut(s)	934, 1043, 1071, 1959
BstSFI	CTRYAG	1 cut(s)	2214
BstV1I	GCAGC	9 cut(s)	854, 878, 943, 1231, 1234, 1295, 1643, 1795, 2184
BstV2I	GAAGAC	3 cut(s)	672, 1882, 2226
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	976, 2181
BtgI	CCRYGG	1 cut(s)	2233
BtgZI	GCGATG	1 cut(s)	2213
BtsI	GCAGTG	1 cut(s)	1119
BtsIMutI	CAGTG	5 cut(s)	1119, 1246, 1908, 1930, 2256
Cac8I	GCNNGC	7 cut(s)	6, 762, 774, 974, 2201, 2214, 2268
CaiI	CAGNNNCTG	1 cut(s)	848
CfoI	GCGC	5 cut(s)	381, 1693, 1926, 2260, 2299
Cfr10I	RCCGGY	1 cut(s)	972
Cfr13I	GGNCC	5 cut(s)	577, 694, 975, 1559, 1790
CseI	GACGC	2 cut(s)	266, 1985
Csp6I	GTAC	4 cut(s)	211, 480, 1211, 1413
CviAII	CATG	9 cut(s)	439, 890, 1319, 1429, 1477, 1787, 1817, 2200, 2224
CviQI	GTAC	4 cut(s)	211, 480, 1211, 1413
DdeI	CTNAG	6 cut(s)	91, 533, 1154, 1254, 1265, 1287
DinI	GGCGCC	1 cut(s)	2298
DpnI	GATC	6 cut(s)	301, 336, 856, 1599, 1815, 2286
DpnII	GATC	6 cut(s)	299, 334, 854, 1597, 1813, 2284
DraI	TTTAAA	2 cut(s)	1993, 2124
Eam1104I	CTCTTC	7 cut(s)	80, 150, 290, 380, 597, 1104, 1449
EarI	CTCTTC	7 cut(s)	80, 150, 290, 380, 597, 1104, 1449
Ecl136II	GAGCTC	1 cut(s)	90
Eco130I	CCWWGG	3 cut(s)	617, 1086, 2176
Eco24I	GRGCYC	2 cut(s)	92, 798
Eco31I	GGTCTC	3 cut(s)	24, 1387, 1678
Eco47I	GGWCC	4 cut(s)	577, 694, 1559, 1790
Eco53kI	GAGCTC	1 cut(s)	90
Eco57I	CTGAAG	3 cut(s)	561, 1350, 2034
Eco72I	CACGTG	2 cut(s)	2110, 2143
Eco88I	CYCGRG	2 cut(s)	27, 780
Eco91I	GGTNACC	1 cut(s)	1606
EcoICRI	GAGCTC	1 cut(s)	90
EcoO65I	GGTNACC	1 cut(s)	1606
EcoRII	CCWGG	3 cut(s)	934, 1043, 1959
EcoT14I	CCWWGG	3 cut(s)	617, 1086, 2176
EcoT22I	ATGCAT	2 cut(s)	1482, 2229
EcoT38I	GRGCYC	2 cut(s)	92, 798
EgeI	GGCGCC	1 cut(s)	2298
EheI	GGCGCC	1 cut(s)	2298
ErhI	CCWWGG	3 cut(s)	617, 1086, 2176
FaeI	CATG	9 cut(s)	442, 893, 1322, 1432, 1480, 1790, 1820, 2203, 2227
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	9 cut(s)	438, 889, 1318, 1428, 1476, 1786, 1816, 2199, 2223
FauI	CCCGC	1 cut(s)	753
FbaI	TGATCA	2 cut(s)	1813, 2284
FriOI	GRGCYC	2 cut(s)	92, 798
FspBI	CTAG	9 cut(s)	477, 618, 839, 969, 1103, 1119, 1188, 1484, 2204
GlaI	GCGC	5 cut(s)	380, 1692, 1925, 2259, 2298
GsaI	CCCAGC	1 cut(s)	1233
GsuI	CTGGAG	2 cut(s)	30, 579
HaeII	RGCGCY	2 cut(s)	1927, 2300
HaeIII	GGCC	2 cut(s)	976, 2181
HapII	CCGG	3 cut(s)	973, 1072, 1524
HgaI	GACGC	2 cut(s)	266, 1985
HhaI	GCGC	5 cut(s)	381, 1693, 1926, 2260, 2299
Hin1I	GRCGYC	1 cut(s)	2297
Hin1II	CATG	9 cut(s)	442, 893, 1322, 1432, 1480, 1790, 1820, 2203, 2227
Hin6I	GCGC	5 cut(s)	379, 1691, 1924, 2258, 2297
HinP1I	GCGC	5 cut(s)	379, 1691, 1924, 2258, 2297
HincII	GTYRAC	1 cut(s)	1201
HindII	GTYRAC	1 cut(s)	1201
HindIII	AAGCTT	1 cut(s)	1147
HinfI	GANTC	4 cut(s)	12, 1091, 1184, 1192
HpaI	GTTAAC	1 cut(s)	1201
HpaII	CCGG	3 cut(s)	973, 1072, 1524
HphI	GGTGA	5 cut(s)	210, 496, 928, 1271, 1484
Hpy166II	GTNNAC	6 cut(s)	836, 1160, 1201, 1262, 2140, 2237
Hpy188III	TCNNGA	9 cut(s)	29, 132, 234, 662, 782, 1153, 1808, 1843, 2288
Hpy8I	GTNNAC	6 cut(s)	836, 1160, 1201, 1262, 2140, 2237
HpyCH4III	ACNGT	6 cut(s)	464, 484, 571, 1903, 1934, 2163
HpyCH4IV	ACGT	2 cut(s)	2109, 2142
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1103, 1289, 1665, 1783, 1976, 2178, 2209
HpyF3I	CTNAG	6 cut(s)	91, 533, 1154, 1254, 1265, 1287
HpySE526I	ACGT	2 cut(s)	2109, 2142
Hsp92I	GRCGYC	1 cut(s)	2297
Hsp92II	CATG	9 cut(s)	442, 893, 1322, 1432, 1480, 1790, 1820, 2203, 2227
HspAI	GCGC	5 cut(s)	379, 1691, 1924, 2258, 2297
KasI	GGCGCC	1 cut(s)	2296
KroI	GCCGGC	1 cut(s)	972
KroNI	GCCGGC	1 cut(s)	974
Ksp22I	TGATCA	2 cut(s)	1813, 2284
KspAI	GTTAAC	1 cut(s)	1201
Kzo9I	GATC	6 cut(s)	299, 334, 854, 1597, 1813, 2284
LguI	GCTCTTC	3 cut(s)	80, 150, 1104
LmnI	GCTCC	6 cut(s)	117, 801, 814, 1018, 1984, 2025
Lsp1109I	GCAGC	9 cut(s)	854, 878, 943, 1231, 1234, 1295, 1643, 1795, 2184
LweI	GCATC	7 cut(s)	188, 519, 1099, 1489, 1702, 1770, 2236
MaeI	CTAG	9 cut(s)	477, 618, 839, 969, 1103, 1119, 1188, 1484, 2204
MaeII	ACGT	2 cut(s)	2109, 2142
MaeIII	GTNAC	2 cut(s)	1472, 1606
MalI	GATC	6 cut(s)	301, 336, 856, 1599, 1815, 2286
MboI	GATC	6 cut(s)	299, 334, 854, 1597, 1813, 2284
MfeI	CAATTG	2 cut(s)	1707, 2001
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	3 cut(s)	92, 798, 883
Mly113I	GGCGCC	1 cut(s)	2297
MlyI	GAGTC	2 cut(s)	21, 1085
MmeI	TCCRAC	4 cut(s)	501, 719, 966, 1024
Mph1103I	ATGCAT	2 cut(s)	1482, 2229
MroNI	GCCGGC	1 cut(s)	972
MroXI	GAANNNNTTC	4 cut(s)	1164, 1335, 1717, 1830
MseI	TTAA	7 cut(s)	626, 639, 747, 1200, 1992, 2123, 2274
MslI	CAYNNNNRTG	2 cut(s)	888, 2232
MspI	CCGG	3 cut(s)	973, 1072, 1524
MspR9I	CCNGG	4 cut(s)	936, 1045, 1073, 1961
MunI	CAATTG	2 cut(s)	1707, 2001
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	3 cut(s)	936, 1045, 1961
MwoI	GCNNNNNNNGC	7 cut(s)	1103, 1289, 1665, 1783, 1976, 2178, 2209
NaeI	GCCGGC	1 cut(s)	974
NarI	GGCGCC	1 cut(s)	2297
NciI	CCSGG	1 cut(s)	1073
NdeII	GATC	6 cut(s)	299, 334, 854, 1597, 1813, 2284
NgoMIV	GCCGGC	1 cut(s)	972
NlaIII	CATG	9 cut(s)	442, 893, 1322, 1432, 1480, 1790, 1820, 2203, 2227
NlaIV	GGNNCC	6 cut(s)	695, 797, 940, 1020, 2027, 2298
NmuCI	GTSAC	1 cut(s)	1472
NsiI	ATGCAT	2 cut(s)	1482, 2229
NspI	RCATGY	4 cut(s)	893, 1480, 2203, 2227
NspV	TTCGAA	1 cut(s)	1834
PaeI	GCATGC	1 cut(s)	2203
PaeR7I	CTCGAG	2 cut(s)	27, 780
PciSI	GCTCTTC	3 cut(s)	80, 150, 1104
PcsI	WCGNNNNNNNCGW	1 cut(s)	2236
PctI	GAATGC	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	974
PdmI	GAANNNNTTC	4 cut(s)	1164, 1335, 1717, 1830
PfeI	GAWTC	2 cut(s)	1184, 1192
PleI	GAGTC	2 cut(s)	20, 1085
PluTI	GGCGCC	1 cut(s)	2300
PmaCI	CACGTG	2 cut(s)	2110, 2143
PmlI	CACGTG	2 cut(s)	2110, 2143
PpsI	GAGTC	2 cut(s)	20, 1085
Ppu21I	YACGTR	2 cut(s)	2110, 2143
PsiI	TTATAA	1 cut(s)	2192
Psp124BI	GAGCTC	1 cut(s)	92
Psp6I	CCWGG	3 cut(s)	934, 1043, 1959
PspCI	CACGTG	2 cut(s)	2110, 2143
PspEI	GGTNACC	1 cut(s)	1606
PspFI	CCCAGC	1 cut(s)	1229
PspGI	CCWGG	3 cut(s)	934, 1043, 1959
PspN4I	GGNNCC	6 cut(s)	695, 797, 940, 1020, 2027, 2298
PspPI	GGNCC	5 cut(s)	577, 694, 975, 1559, 1790
PstI	CTGCAG	1 cut(s)	2218
PstNI	CAGNNNCTG	1 cut(s)	848
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	4 cut(s)	212, 481, 1212, 1414
RsaNI	GTAC	4 cut(s)	211, 480, 1211, 1413
RseI	CAYNNNNRTG	2 cut(s)	888, 2232
SacI	GAGCTC	1 cut(s)	92
SapI	GCTCTTC	3 cut(s)	80, 150, 1104
SaqAI	TTAA	7 cut(s)	626, 639, 747, 1200, 1992, 2123, 2274
Sau3AI	GATC	6 cut(s)	299, 334, 854, 1597, 1813, 2284
Sau96I	GGNCC	5 cut(s)	577, 694, 975, 1559, 1790
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	2 cut(s)	21, 1085
ScrFI	CCNGG	4 cut(s)	936, 1045, 1073, 1961
SduI	GDGCHC	3 cut(s)	92, 798, 883
SfaNI	GCATC	7 cut(s)	188, 519, 1099, 1489, 1702, 1770, 2236
SfcI	CTRYAG	1 cut(s)	2214
SfoI	GGCGCC	1 cut(s)	2298
Sfr274I	CTCGAG	2 cut(s)	27, 780
SfuI	TTCGAA	1 cut(s)	1834
SinI	GGWCC	4 cut(s)	577, 694, 1559, 1790
SlaI	CTCGAG	2 cut(s)	27, 780
SmiMI	CAYNNNNRTG	2 cut(s)	888, 2232
SmlI	CTYRAG	3 cut(s)	27, 161, 780
SmoI	CTYRAG	3 cut(s)	27, 161, 780
SpeI	ACTAGT	1 cut(s)	476
SphI	GCATGC	1 cut(s)	2203
SsiI	CCGC	3 cut(s)	760, 1106, 1927
SspDI	GGCGCC	1 cut(s)	2296
SspI	AATATT	1 cut(s)	455
SspMI	CTAG	9 cut(s)	477, 618, 839, 969, 1103, 1119, 1188, 1484, 2204
SstI	GAGCTC	1 cut(s)	92
StyD4I	CCNGG	4 cut(s)	934, 1043, 1071, 1959
StyI	CCWWGG	3 cut(s)	617, 1086, 2176
TaaI	ACNGT	6 cut(s)	464, 484, 571, 1903, 1934, 2163
TaiI	ACGT	2 cut(s)	2112, 2145
TaqI	TCGA	5 cut(s)	28, 302, 573, 781, 1834
TaqII	GACCGA	2 cut(s)	276, 711
TatI	WGTACW	2 cut(s)	210, 1210
TauI	GCSGC	1 cut(s)	1929
TfiI	GAWTC	2 cut(s)	1184, 1192
Tru1I	TTAA	7 cut(s)	626, 639, 747, 1200, 1992, 2123, 2274
Tru9I	TTAA	7 cut(s)	626, 639, 747, 1200, 1992, 2123, 2274
TscAI	CASTG	5 cut(s)	1119, 1246, 1908, 1937, 2256
TseFI	GTSAC	1 cut(s)	1472
TseI	GCWGC	9 cut(s)	842, 866, 931, 1244, 1247, 1283, 1656, 1783, 2172
Tsp45I	GTSAC	1 cut(s)	1472
TspRI	CASTG	5 cut(s)	1119, 1246, 1908, 1937, 2256
VpaK11BI	GGWCC	4 cut(s)	577, 694, 1559, 1790
XapI	RAATTY	3 cut(s)	52, 1830, 1837
XceI	RCATGY	4 cut(s)	893, 1480, 2203, 2227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2114
XhoI	CTCGAG	2 cut(s)	27, 780
XmaJI	CCTAGG	1 cut(s)	617
XmnI	GAANNNNTTC	4 cut(s)	1164, 1335, 1717, 1830
XspI	CTAG	9 cut(s)	477, 618, 839, 969, 1103, 1119, 1188, 1484, 2204
ZrmI	AGTACT	1 cut(s)	212
Zsp2I	ATGCAT	2 cut(s)	1482, 2229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.