Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002851

Physical Location & Seq

Genomic Coordinates Forward (+)

5186208 .. 5192818

Gene Structure 6611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG030000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2340 bp

ATGCTTGCTGGAGTGAAGTTCATACCTCGAGACCAGATTGATAAAGATGAGAATTTGAATGCTTCTGCGAAACAGAAACAGAAGAAGGGCTCAGGTAATAAGAAGGGTAAGCGTAGGAGGGAAAGGAGTTCTGGATATAGTAGTTCGGATGGCGAAGAGCTTGAGAGAATAAAGAAGGGATCTAAAAAAAAGTGGTATTCATTGGATGAGTACTCATCATCATCATATTCTTCGGGAAATGAAAGTGAGGAAAGTTCTGACCGAGATAGAAAGAAGCCTCTGAATAAGAAAAAGAAGAGATCGAGTAGCAGTAGAAAAGATTATAGTTCAGAAGATCTTTCATCTGCTTCTGATAGTTATTCTGATAGGAAAGACAAGCGCAAGAAGAGAAGCCGAAAAGATGGAAAGAAAAAGAGTAGAGATAGAAGTCAGGGAGGCATGGAGGATGATGGATATTTTGACGGTGGTAGAGGAACTAGTACGGTGAAAGATGGGGAAATTGTGAGGAAGAAAATTGGGTTGGAGTGGATGCTTAGACCTGAAGGAAAAGAGAGAACACCTACTATTACTGTCGAGGACCAGCCAAAAGAAACTCCAGTTGAAGAGACAAAGAAGGTCAATCCTAGGGAATTAAATCCATATTTTAAGGATGAGGGAAGTGGTTATCCAGAAGATAATGATGAACCTAAAGCTGGTGGGGATCGACTTTTACCTTCCTCTGTTGTTGGGGATGGAGGTGCAAGTTGGAGACTTAAAGCATTGAAGCGGGCAAAAGAGCAAGCAACTCGAGAAGGACAAGGGCTCCACGAGGTTGTTGAAGAGCGTTGGGGTTCTCTCGGTAAACTAGCGGCCTCTGTGGGATCAAATAAAGCAGCCCCATCTCGTGCTCATCTACATGCAATACAAAGTAGAAAGAAAGGGGTGAGTGAGGAACAGCAGCCAGGTTCCAACAATGACATGGATAAGAAGGACACTAGCCGGCCCTACCTAAAGGATGTATCTATCCGACATCCCAAAATGAAGGAGCCTAAAGTTCAAGGTTCTTTATCCTGGGGGAAGCAAAAGGGTCAAAAGAGTCGGGATGTCTCTACCAAGGACTCTGCTCTTCTAGCAGATGCAGTGTCTAGCATAAACAGGTTTTCCAATGATGGAAGCTTCCTGAGTGAACTTATTCGTAAGCAGACTAATGATTCTAGGAGTCCTGTTAATGAAAATGTACTCGACACGAGAAAACCCAGCGAAGCCAGTGCTGCTGCCTCTAATGGTGAACTGAGTGCGAACCAGTTGGCAGCTAAGGCTTTTCAGCTTCGTATGAAAGGGAAGCATGAAGAAGCTGAAGAACTTCTGCAAGAAGTAGAAAACCTAAAGGCAAAGCAGGGTGGTGGAGATAATCCGATGAGACCACAATATGAAAGAGGTACAAACAGATATGCTATGCAGGATATGTCTCTTCGTCAAAAGAAAAAGGATGATGATGGTGACATGCATCTAGCCCAAAAGATAATGCAGAACAAAAAATATAGTATATCTGGTCAGGCAGATGATGAATACGACTTTGATGATGGTCCAATCAAAAAGTGTAAAAAGAAGCAGGGAAGTGATGATCGCAAGGTCGCCCAGAAGAATACATTTGCAAATCGTTTCTCCATTCAGCAAGAACGCTGCCTTTTCTGCTTTGAAAATCCAAAGAGACCAGCGCATCTGGTTGTGGCAATTGGAAATTATTCATATTTGATGTTGCCACAGCAGAAGCCTGTTGTGGATGGTCATTGCTACATTTTGCCGATGCAGCATGTACCAGCCACAAGAACTCTTGATGATCATGTATGGGAAGAAATTCGAAATTTCAAGAAATGCCTTATTATGATGTTTGCGAAGCAAGAGAAGGATGTTGTCTTCCTTGAAACAGTGATGGGATTAGCTCAACAGCGCCGCCACTGTATAATTGAGTGTATTCCTTTGCCCCAGGATATAGCTAAAGACGCTCCCTTATATTTTAAAAAGGCAATTGATGAAGCTGAAGATGAGTGGAGCCAACACAATGCCAAAAAACTTATTGATACAAGTGTAAAGGGATTGCGAGGTTCAGTTCCAGCTAATTTTCCATATTTCCACGTGGAGTTTGGTTTAAATAAGGGGTTTGTCCACGTGATTGATGATGAAACACAGTTCAATAGCAGCCTTGGCCTGAATGTTATAAGAGGCATGCTAGAGTTGCCTGCAGAAGACATGCATCGCCGTGGACGATATGAGCCAGTGGAAGCGCAAAAGCAAGCCGTTAAGAGGTTTGATCAAGATTGGGCGCCGTTTGACTGGACAAAACAGCTTCATCAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CwfJ_C_1 CwfJ_C_2

Protein Analysis

779

Amino Acids

88.21

Weight (kDa)

9.29

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CwfJ_C_1	PF04677	547 - 667	1.4e-42	Protein similar to CwfJ C-terminal
CwfJ_C_2	PF04676	676 - 773	7.7e-27	Protein similar to CwfJ C-terminus 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56290
fragaria_vesca	FvH4_4g02820 FvH4_4g02820 FvH4_4g02820 FvH4_4g02820
malus_domestica	MD13G1208100.v1.1 MD16G1209600.v1.1
prunus_persica	Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1
pyrus_communis	pycom13g18020 pycom16g17690
rosa_chinensis	RchiOBHm_Chr4g0390791 RchiOBHm_Chr5g0000461
rosa_laevigata	RLG00000009911 RLG00000030869
rosa_multiflora	Rmu_sc0000171.1_g000026 Rmu_sc0001380.1_g000027 Rmu_sc0003949.1_g000006
rosa_roxburghii	Rroxscaffold_1G00075700 Rroxscaffold_5G00336660 Rroxscaffold_5G00336680 Rroxscaffold_5G00336690
rosa_rugosa	Rorug03G0331500 Rorug03G0331500 Rorug04G0383800
rosa_samantha	Rh4AG033200 Rh4BG027000 Rh4CG036800 Rh4DG030000 Rh5AG003800 Rh5BG005000 Rh5CG004100 Rh5DG004000
rosa_wichuraiana	Rw5G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2198
AccB1I	GGYRCC	1 cut(s)	2302
AciI	CCGC	3 cut(s)	766, 848, 1933
AclWI	GGATC	3 cut(s)	187, 708, 868
AcsI	RAATTY	3 cut(s)	52, 1836, 1843
AcuI	CTGAAG	3 cut(s)	561, 1356, 2040
AcvI	CACGTG	2 cut(s)	2116, 2149
AcyI	GRCGYC	1 cut(s)	2303
AfaI	GTAC	5 cut(s)	212, 481, 1218, 1420, 1797
AfiI	CCNNNNNNNGG	2 cut(s)	692, 2283
AgsI	TTSAA	9 cut(s)	58, 602, 763, 818, 1037, 1679, 1849, 1904, 2173
AhlI	ACTAGT	1 cut(s)	476
AjnI	CCWGG	3 cut(s)	940, 1049, 1965
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
Alw21I	GWGCWC	1 cut(s)	889
Alw26I	GTCTC	7 cut(s)	24, 599, 742, 1090, 1393, 1452, 1684
AlwI	GGATC	3 cut(s)	187, 708, 868
Ama87I	CYCGRG	2 cut(s)	27, 786
AoxI	GGCC	3 cut(s)	849, 980, 2185
ApeKI	GCWGC	8 cut(s)	872, 937, 1250, 1253, 1289, 1662, 1789, 2178
ApoI	RAATTY	3 cut(s)	52, 1836, 1843
Asp700I	GAANNNNTTC	4 cut(s)	1170, 1341, 1723, 1836
AspA2I	CCTAGG	1 cut(s)	623
AspLEI	GCGC	5 cut(s)	381, 1699, 1932, 2266, 2305
AspS9I	GGNCC	3 cut(s)	577, 981, 1565
AsuHPI	GGTGA	4 cut(s)	496, 934, 1277, 1490
AsuII	TTCGAA	1 cut(s)	1840
AvaI	CYCGRG	2 cut(s)	27, 786
AvaII	GGWCC	2 cut(s)	577, 1565
AvrII	CCTAGG	1 cut(s)	623
BaeI	ACNNNNGTAYC	2 cut(s)	2052, 2085
BanI	GGYRCC	1 cut(s)	2302
BanII	GRGCYC	2 cut(s)	92, 804
BauI	CACGAG	3 cut(s)	806, 882, 1225
BbrPI	CACGTG	2 cut(s)	2116, 2149
BbsI	GAAGAC	2 cut(s)	1888, 2232
Bbv12I	GWGCWC	1 cut(s)	889
BbvI	GCAGC	8 cut(s)	884, 949, 1237, 1240, 1301, 1649, 1801, 2190
BceAI	ACGGC	3 cut(s)	2223, 2261, 2290
BcgI	CGANNNNNNTGC	4 cut(s)	767, 801, 1229, 1263
BciT130I	CCWGG	3 cut(s)	942, 1051, 1967
BclI	TGATCA	2 cut(s)	1819, 2290
BcoDI	GTCTC	7 cut(s)	24, 599, 742, 1090, 1393, 1452, 1684
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	9 cut(s)	477, 624, 845, 975, 1109, 1125, 1194, 1490, 2210
BfmI	CTRYAG	1 cut(s)	2220
BfoI	RGCGCY	2 cut(s)	1933, 2306
BglII	AGATCT	1 cut(s)	334
BlnI	CCTAGG	1 cut(s)	623
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	3 cut(s)	942, 1051, 1967
Bme18I	GGWCC	2 cut(s)	577, 1565
BmeT110I	CYCGRG	2 cut(s)	27, 786
BmgT120I	GGNCC	3 cut(s)	577, 981, 1565
BmiI	GGNNCC	5 cut(s)	803, 946, 1026, 2033, 2304
BmrFI	CCNGG	3 cut(s)	942, 1051, 1967
BmsI	GCATC	6 cut(s)	519, 1105, 1495, 1708, 1776, 2242
BpiI	GAAGAC	2 cut(s)	1888, 2232
BpmI	CTGGAG	2 cut(s)	30, 579
Bpu10I	CCTNAGC	2 cut(s)	91, 1293
Bpu14I	TTCGAA	1 cut(s)	1840
BpuEI	CTTGAG	1 cut(s)	182
BsaAI	YACGTR	2 cut(s)	2116, 2149
BsaHI	GRCGYC	1 cut(s)	2303
BsaI	GGTCTC	3 cut(s)	24, 1393, 1684
BsaJI	CCNNGG	6 cut(s)	623, 1050, 1092, 1965, 2182, 2239
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bsc4I	CCNNNNNNNGG	2 cut(s)	692, 2283
Bse118I	RCCGGY	1 cut(s)	978
Bse1I	ACTGG	5 cut(s)	596, 1245, 1282, 2255, 2318
Bse3DI	GCAATG	1 cut(s)	1768
BseBI	CCWGG	3 cut(s)	942, 1051, 1967
BseDI	CCNNGG	6 cut(s)	623, 1050, 1092, 1965, 2182, 2239
BseLI	CCNNNNNNNGG	2 cut(s)	692, 2283
BseMI	GCAATG	1 cut(s)	1768
BseMII	CTCAG	3 cut(s)	105, 1151, 1262
BseNI	ACTGG	5 cut(s)	596, 1245, 1282, 2255, 2318
BseXI	GCAGC	8 cut(s)	884, 949, 1237, 1240, 1301, 1649, 1801, 2190
BseYI	CCCAGC	1 cut(s)	1235
BshFI	GGCC	3 cut(s)	851, 982, 2187
BshNI	GGYRCC	1 cut(s)	2302
BsiHKAI	GWGCWC	1 cut(s)	889
BsiHKCI	CYCGRG	2 cut(s)	27, 786
BsiSI	CCGG	1 cut(s)	979
BslI	CCNNNNNNNGG	2 cut(s)	692, 2283
BsmAI	GTCTC	7 cut(s)	24, 599, 742, 1090, 1393, 1452, 1684
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	3 cut(s)	851, 982, 2187
Bso31I	GGTCTC	3 cut(s)	24, 1393, 1684
BsoBI	CYCGRG	2 cut(s)	27, 786
Bsp119I	TTCGAA	1 cut(s)	1840
Bsp1286I	GDGCHC	3 cut(s)	92, 804, 889
Bsp143I	GATC	8 cut(s)	179, 299, 334, 700, 860, 1603, 1819, 2290
BspACI	CCGC	3 cut(s)	766, 848, 1933
BspANI	GGCC	3 cut(s)	851, 982, 2187
BspCNI	CTCAG	3 cut(s)	104, 1152, 1263
BspLI	GGNNCC	5 cut(s)	803, 946, 1026, 2033, 2304
BspMAI	CTGCAG	1 cut(s)	2224
BspPI	GGATC	3 cut(s)	187, 708, 868
BspQI	GCTCTTC	3 cut(s)	150, 813, 1110
BspT104I	TTCGAA	1 cut(s)	1840
BspT107I	GGYRCC	1 cut(s)	2302
BspTNI	GGTCTC	3 cut(s)	24, 1393, 1684
BsrDI	GCAATG	1 cut(s)	1768
BsrFI	RCCGGY	1 cut(s)	978
BsrI	ACTGG	5 cut(s)	596, 1245, 1282, 2255, 2318
BssAI	RCCGGY	1 cut(s)	978
BssECI	CCNNGG	6 cut(s)	623, 1050, 1092, 1965, 2182, 2239
BssMI	GATC	8 cut(s)	179, 299, 334, 700, 860, 1603, 1819, 2290
BssNI	GRCGYC	1 cut(s)	2303
BssSI	CACGAG	3 cut(s)	806, 882, 1225
BssT1I	CCWWGG	3 cut(s)	623, 1092, 2182
Bst2BI	CACGAG	3 cut(s)	806, 882, 1225
Bst2UI	CCWGG	3 cut(s)	942, 1051, 1967
Bst4CI	ACNGT	6 cut(s)	464, 484, 571, 1909, 1940, 2169
Bst6I	CTCTTC	7 cut(s)	150, 290, 380, 597, 813, 1110, 1455
BstACI	GRCGYC	1 cut(s)	2303
BstBAI	YACGTR	2 cut(s)	2116, 2149
BstBI	TTCGAA	1 cut(s)	1840
BstC8I	GCNNGC	7 cut(s)	6, 768, 780, 980, 2207, 2220, 2274
BstDEI	CTNAG	5 cut(s)	91, 533, 1160, 1271, 1293
BstDSI	CCRYGG	1 cut(s)	2239
BstH2I	RGCGCY	2 cut(s)	1933, 2306
BstHHI	GCGC	5 cut(s)	381, 1699, 1932, 2266, 2305
BstKTI	GATC	8 cut(s)	182, 302, 337, 703, 863, 1606, 1822, 2293
BstMAI	GTCTC	7 cut(s)	24, 599, 742, 1090, 1393, 1452, 1684
BstMBI	GATC	8 cut(s)	179, 299, 334, 700, 860, 1603, 1819, 2290
BstMWI	GCNNNNNNNGC	8 cut(s)	1109, 1250, 1295, 1671, 1789, 1982, 2184, 2215
BstNI	CCWGG	3 cut(s)	942, 1051, 1967
BstNSI	RCATGY	5 cut(s)	899, 1486, 1796, 2209, 2233
BstSCI	CCNGG	3 cut(s)	940, 1049, 1965
BstSFI	CTRYAG	1 cut(s)	2220
BstV1I	GCAGC	8 cut(s)	884, 949, 1237, 1240, 1301, 1649, 1801, 2190
BstV2I	GAAGAC	2 cut(s)	1888, 2232
BstX2I	RGATCY	2 cut(s)	179, 334
BstYI	RGATCY	2 cut(s)	179, 334
BsuRI	GGCC	3 cut(s)	851, 982, 2187
BtgI	CCRYGG	1 cut(s)	2239
BtgZI	GCGATG	1 cut(s)	2219
BtsI	GCAGTG	1 cut(s)	1125
BtsIMutI	CAGTG	5 cut(s)	1125, 1252, 1914, 1936, 2262
Cac8I	GCNNGC	7 cut(s)	6, 768, 780, 980, 2207, 2220, 2274
CfoI	GCGC	5 cut(s)	381, 1699, 1932, 2266, 2305
Cfr10I	RCCGGY	1 cut(s)	978
Cfr13I	GGNCC	3 cut(s)	577, 981, 1565
CseI	GACGC	1 cut(s)	1991
Csp6I	GTAC	5 cut(s)	211, 480, 1217, 1419, 1796
CviAII	CATG	9 cut(s)	439, 896, 958, 1325, 1483, 1793, 1823, 2206, 2230
CviQI	GTAC	5 cut(s)	211, 480, 1217, 1419, 1796
DdeI	CTNAG	5 cut(s)	91, 533, 1160, 1271, 1293
DinI	GGCGCC	1 cut(s)	2304
DpnI	GATC	8 cut(s)	181, 301, 336, 702, 862, 1605, 1821, 2292
DpnII	GATC	8 cut(s)	179, 299, 334, 700, 860, 1603, 1819, 2290
DraI	TTTAAA	2 cut(s)	1999, 2130
Eam1104I	CTCTTC	7 cut(s)	150, 290, 380, 597, 813, 1110, 1455
EarI	CTCTTC	7 cut(s)	150, 290, 380, 597, 813, 1110, 1455
Eco130I	CCWWGG	3 cut(s)	623, 1092, 2182
Eco24I	GRGCYC	2 cut(s)	92, 804
Eco31I	GGTCTC	3 cut(s)	24, 1393, 1684
Eco47I	GGWCC	2 cut(s)	577, 1565
Eco57I	CTGAAG	3 cut(s)	561, 1356, 2040
Eco72I	CACGTG	2 cut(s)	2116, 2149
Eco88I	CYCGRG	2 cut(s)	27, 786
EcoRII	CCWGG	3 cut(s)	940, 1049, 1965
EcoT14I	CCWWGG	3 cut(s)	623, 1092, 2182
EcoT22I	ATGCAT	2 cut(s)	1488, 2235
EcoT38I	GRGCYC	2 cut(s)	92, 804
EgeI	GGCGCC	1 cut(s)	2304
EheI	GGCGCC	1 cut(s)	2304
ErhI	CCWWGG	3 cut(s)	623, 1092, 2182
FaeI	CATG	9 cut(s)	442, 899, 961, 1328, 1486, 1796, 1826, 2209, 2233
FatI	CATG	9 cut(s)	438, 895, 957, 1324, 1482, 1792, 1822, 2205, 2229
FauI	CCCGC	1 cut(s)	759
FbaI	TGATCA	2 cut(s)	1819, 2290
FriOI	GRGCYC	2 cut(s)	92, 804
FspBI	CTAG	9 cut(s)	477, 624, 845, 975, 1109, 1125, 1194, 1490, 2210
GlaI	GCGC	5 cut(s)	380, 1698, 1931, 2265, 2304
GsaI	CCCAGC	1 cut(s)	1239
GsuI	CTGGAG	2 cut(s)	30, 579
HaeII	RGCGCY	2 cut(s)	1933, 2306
HaeIII	GGCC	3 cut(s)	851, 982, 2187
HapII	CCGG	1 cut(s)	979
HgaI	GACGC	1 cut(s)	1991
HhaI	GCGC	5 cut(s)	381, 1699, 1932, 2266, 2305
Hin1I	GRCGYC	1 cut(s)	2303
Hin1II	CATG	9 cut(s)	442, 899, 961, 1328, 1486, 1796, 1826, 2209, 2233
Hin6I	GCGC	5 cut(s)	379, 1697, 1930, 2264, 2303
HinP1I	GCGC	5 cut(s)	379, 1697, 1930, 2264, 2303
HindIII	AAGCTT	1 cut(s)	1153
HinfI	GANTC	4 cut(s)	1075, 1097, 1190, 1198
HpaII	CCGG	1 cut(s)	979
HphI	GGTGA	4 cut(s)	496, 934, 1277, 1490
Hpy166II	GTNNAC	5 cut(s)	842, 1166, 1268, 2146, 2243
Hpy188I	TCNGA	8 cut(s)	148, 259, 282, 331, 352, 364, 1007, 1395
Hpy8I	GTNNAC	5 cut(s)	842, 1166, 1268, 2146, 2243
HpyCH4III	ACNGT	6 cut(s)	464, 484, 571, 1909, 1940, 2169
HpyCH4IV	ACGT	2 cut(s)	2115, 2148
HpyF10VI	GCNNNNNNNGC	8 cut(s)	1109, 1250, 1295, 1671, 1789, 1982, 2184, 2215
HpyF3I	CTNAG	5 cut(s)	91, 533, 1160, 1271, 1293
HpySE526I	ACGT	2 cut(s)	2115, 2148
Hsp92I	GRCGYC	1 cut(s)	2303
Hsp92II	CATG	9 cut(s)	442, 899, 961, 1328, 1486, 1796, 1826, 2209, 2233
HspAI	GCGC	5 cut(s)	379, 1697, 1930, 2264, 2303
KasI	GGCGCC	1 cut(s)	2302
KroI	GCCGGC	1 cut(s)	978
KroNI	GCCGGC	1 cut(s)	980
Ksp22I	TGATCA	2 cut(s)	1819, 2290
Kzo9I	GATC	8 cut(s)	179, 299, 334, 700, 860, 1603, 1819, 2290
LguI	GCTCTTC	3 cut(s)	150, 813, 1110
LmnI	GCTCC	4 cut(s)	807, 1024, 1990, 2031
Lsp1109I	GCAGC	8 cut(s)	884, 949, 1237, 1240, 1301, 1649, 1801, 2190
LweI	GCATC	6 cut(s)	519, 1105, 1495, 1708, 1776, 2242
MaeI	CTAG	9 cut(s)	477, 624, 845, 975, 1109, 1125, 1194, 1490, 2210
MaeII	ACGT	2 cut(s)	2115, 2148
MaeIII	GTNAC	1 cut(s)	1478
MalI	GATC	8 cut(s)	181, 301, 336, 702, 862, 1605, 1821, 2292
MboI	GATC	8 cut(s)	179, 299, 334, 700, 860, 1603, 1819, 2290
MfeI	CAATTG	2 cut(s)	1713, 2007
MflI	RGATCY	2 cut(s)	179, 334
MhlI	GDGCHC	3 cut(s)	92, 804, 889
Mly113I	GGCGCC	1 cut(s)	2303
MlyI	GAGTC	3 cut(s)	1084, 1091, 1207
MmeI	TCCRAC	4 cut(s)	501, 725, 972, 1030
Mph1103I	ATGCAT	2 cut(s)	1488, 2235
MroNI	GCCGGC	1 cut(s)	978
MroXI	GAANNNNTTC	4 cut(s)	1170, 1341, 1723, 1836
MseI	TTAA	7 cut(s)	632, 645, 753, 1206, 1998, 2129, 2280
MslI	CAYNNNNRTG	2 cut(s)	894, 2238
MspI	CCGG	1 cut(s)	979
MspR9I	CCNGG	3 cut(s)	942, 1051, 1967
MunI	CAATTG	2 cut(s)	1713, 2007
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	3 cut(s)	942, 1051, 1967
MwoI	GCNNNNNNNGC	8 cut(s)	1109, 1250, 1295, 1671, 1789, 1982, 2184, 2215
NaeI	GCCGGC	1 cut(s)	980
NarI	GGCGCC	1 cut(s)	2303
NdeII	GATC	8 cut(s)	179, 299, 334, 700, 860, 1603, 1819, 2290
NgoMIV	GCCGGC	1 cut(s)	978
NlaIII	CATG	9 cut(s)	442, 899, 961, 1328, 1486, 1796, 1826, 2209, 2233
NlaIV	GGNNCC	5 cut(s)	803, 946, 1026, 2033, 2304
NmuCI	GTSAC	1 cut(s)	1478
NsiI	ATGCAT	2 cut(s)	1488, 2235
NspI	RCATGY	5 cut(s)	899, 1486, 1796, 2209, 2233
NspV	TTCGAA	1 cut(s)	1840
PaeI	GCATGC	1 cut(s)	2209
PaeR7I	CTCGAG	2 cut(s)	27, 786
PciSI	GCTCTTC	3 cut(s)	150, 813, 1110
PcsI	WCGNNNNNNNCGW	1 cut(s)	2242
PctI	GAATGC	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	980
PdmI	GAANNNNTTC	4 cut(s)	1170, 1341, 1723, 1836
PfeI	GAWTC	1 cut(s)	1190
PleI	GAGTC	3 cut(s)	1083, 1091, 1206
PluTI	GGCGCC	1 cut(s)	2306
PmaCI	CACGTG	2 cut(s)	2116, 2149
PmlI	CACGTG	2 cut(s)	2116, 2149
PpsI	GAGTC	3 cut(s)	1083, 1091, 1206
Ppu21I	YACGTR	2 cut(s)	2116, 2149
PsiI	TTATAA	1 cut(s)	2198
Psp6I	CCWGG	3 cut(s)	940, 1049, 1965
PspCI	CACGTG	2 cut(s)	2116, 2149
PspFI	CCCAGC	1 cut(s)	1235
PspGI	CCWGG	3 cut(s)	940, 1049, 1965
PspN4I	GGNNCC	5 cut(s)	803, 946, 1026, 2033, 2304
PspPI	GGNCC	3 cut(s)	577, 981, 1565
PstI	CTGCAG	1 cut(s)	2224
PsuI	RGATCY	2 cut(s)	179, 334
RsaI	GTAC	5 cut(s)	212, 481, 1218, 1420, 1797
RsaNI	GTAC	5 cut(s)	211, 480, 1217, 1419, 1796
RseI	CAYNNNNRTG	2 cut(s)	894, 2238
SapI	GCTCTTC	3 cut(s)	150, 813, 1110
SaqAI	TTAA	7 cut(s)	632, 645, 753, 1206, 1998, 2129, 2280
Sau3AI	GATC	8 cut(s)	179, 299, 334, 700, 860, 1603, 1819, 2290
Sau96I	GGNCC	3 cut(s)	577, 981, 1565
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	3 cut(s)	1084, 1091, 1207
ScrFI	CCNGG	3 cut(s)	942, 1051, 1967
SduI	GDGCHC	3 cut(s)	92, 804, 889
SfaNI	GCATC	6 cut(s)	519, 1105, 1495, 1708, 1776, 2242
SfcI	CTRYAG	1 cut(s)	2220
SfoI	GGCGCC	1 cut(s)	2304
Sfr274I	CTCGAG	2 cut(s)	27, 786
SfuI	TTCGAA	1 cut(s)	1840
SinI	GGWCC	2 cut(s)	577, 1565
SlaI	CTCGAG	2 cut(s)	27, 786
SmiMI	CAYNNNNRTG	2 cut(s)	894, 2238
SmlI	CTYRAG	3 cut(s)	27, 161, 786
SmoI	CTYRAG	3 cut(s)	27, 161, 786
SpeI	ACTAGT	1 cut(s)	476
SphI	GCATGC	1 cut(s)	2209
SsiI	CCGC	3 cut(s)	766, 848, 1933
SspDI	GGCGCC	1 cut(s)	2302
SspMI	CTAG	9 cut(s)	477, 624, 845, 975, 1109, 1125, 1194, 1490, 2210
StyD4I	CCNGG	3 cut(s)	940, 1049, 1965
StyI	CCWWGG	3 cut(s)	623, 1092, 2182
TaaI	ACNGT	6 cut(s)	464, 484, 571, 1909, 1940, 2169
TaiI	ACGT	2 cut(s)	2118, 2151
TaqI	TCGA	7 cut(s)	28, 302, 573, 703, 787, 1221, 1840
TaqII	GACCGA	1 cut(s)	276
TatI	WGTACW	2 cut(s)	210, 1216
TauI	GCSGC	2 cut(s)	851, 1935
TfiI	GAWTC	1 cut(s)	1190
Tru1I	TTAA	7 cut(s)	632, 645, 753, 1206, 1998, 2129, 2280
Tru9I	TTAA	7 cut(s)	632, 645, 753, 1206, 1998, 2129, 2280
TscAI	CASTG	5 cut(s)	1125, 1252, 1914, 1943, 2262
TseFI	GTSAC	1 cut(s)	1478
TseI	GCWGC	8 cut(s)	872, 937, 1250, 1253, 1289, 1662, 1789, 2178
Tsp45I	GTSAC	1 cut(s)	1478
TspRI	CASTG	5 cut(s)	1125, 1252, 1914, 1943, 2262
VpaK11BI	GGWCC	2 cut(s)	577, 1565
XapI	RAATTY	3 cut(s)	52, 1836, 1843
XceI	RCATGY	5 cut(s)	899, 1486, 1796, 2209, 2233
XcmI	CCANNNNNNNNNTGG	2 cut(s)	955, 2120
XhoI	CTCGAG	2 cut(s)	27, 786
XmaJI	CCTAGG	1 cut(s)	623
XmnI	GAANNNNTTC	4 cut(s)	1170, 1341, 1723, 1836
XspI	CTAG	9 cut(s)	477, 624, 845, 975, 1109, 1125, 1194, 1490, 2210
ZrmI	AGTACT	1 cut(s)	212
Zsp2I	ATGCAT	2 cut(s)	1488, 2235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.