Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002851

Physical Location & Seq

Genomic Coordinates Forward (+)

4508785 .. 4511383

Gene Structure 2599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTTGCTGGAGTGAAGTTCATACCTGGAGACCAGATTGATAAAGATGAGAATTTGAATGCTTCTGCGAAACAGAAACAGAAGAAGGGCTCAGGTAATAAGAAGGGTAAGCGTAGGAGGGAAAGGAGTTCTGGATATAGTAGTTCGGATGGCAAAGAGCTTGAGAGAATAAAGAAGGGATCTAAAAAAAGGTGGTATTCATCGGATGAGTACTCATCATCATCATATTCTTCGGGAAATGAAAGTGAGGAAAGTTCTGACCGAGATAGAAAGAAGCGTCTAAATAAGAAAAAGAAGAGATCGAGTAGCAGTAGAAAAGCTTATAGTTCAGAAGATCTTTCATCTGCTTCTGATAGTTATTCTGATAGTAAAGACAAGCGCAAGAAGAGAAGCCGAAAAGATGGAAAGAAAAAGAGTAGAGATAGAAGTCAGGGAGGCATGGAGGATGATGGATATTCTGACGGTGGTAGAGGAACTAGTACGGTGAAAGATGGGGAAATTGTGAGGAAGAAAATTGGGTTGGAGTGGATGCTTAGACCTGAAGCAAAAGAGAGAACACCTATTATTACTGTCGAGGACCAGCCAAAAGAAACTCGAGTTGAAGAGACAAAGAAGGTCAATCCTAGGGAATTAAATCCATATTTTAAGGATGAGGGAAGTGGTTATCCAGAAGATAATGATCAACCTAAAGCTGGTGGGGACCGACTTTTACCTTCCTCTGTTGTTGGGGATGGAGGTGCAAGTTGGAGACTTAAAGCATTGAAGCGGGCAAAAGAGCAAGCAACTCGAGAAGGACAAGGGCTCCATGAAGTTGTTGAGGAGCGTTGGGGTTCTCTCGGTAAACTAGCGGCCTCTGTGGGATCAAATAAAGCAGCCCCATCTCATGCTCATCTACATGCAATACAAAGTAGAAAGAAAGGGGTGAGTGAGGAACAGCAGCCAGGTTCCAACAATGACATGGATAAGAAGGACACTAGCCGGCCCTACCTAAAGGATGTATCTATCCGACATCCCAAAATGAAGGAGCCTAAAGTTCAAGGTTCTTTATCCTGGGAAAGGAAAAGGGTCAAAAGAGTCGGGATGTCTCTACCAAGGACTCTGCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CwfJ_C_1 CwfJ_C_2

Protein Analysis

369

Amino Acids

41.38

Weight (kDa)

9.92

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56290
fragaria_vesca	FvH4_4g02820 FvH4_4g02820 FvH4_4g02820 FvH4_4g02820
malus_domestica	MD13G1208100.v1.1 MD16G1209600.v1.1
prunus_persica	Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1
pyrus_communis	pycom13g18020 pycom16g17690
rosa_chinensis	RchiOBHm_Chr4g0390791 RchiOBHm_Chr5g0000461
rosa_laevigata	RLG00000009911 RLG00000030869
rosa_multiflora	Rmu_sc0000171.1_g000026 Rmu_sc0001380.1_g000027 Rmu_sc0003949.1_g000006
rosa_roxburghii	Rroxscaffold_1G00075700 Rroxscaffold_5G00336660 Rroxscaffold_5G00336680 Rroxscaffold_5G00336690
rosa_rugosa	Rorug03G0331500 Rorug03G0331500 Rorug04G0383800
rosa_samantha	Rh4AG033200 Rh4BG027000 Rh4CG036800 Rh4DG030000 Rh5AG003800 Rh5BG005000 Rh5CG004100 Rh5DG004000
rosa_wichuraiana	Rw5G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	766, 848
AclWI	GGATC	2 cut(s)	187, 868
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	2 cut(s)	212, 481
AfiI	CCNNNNNNNGG	2 cut(s)	692, 1056
AgsI	TTSAA	4 cut(s)	58, 602, 763, 1037
AhlI	ACTAGT	1 cut(s)	476
AjnI	CCWGG	3 cut(s)	25, 940, 1049
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AluBI	AGCT	3 cut(s)	160, 320, 692
AluI	AGCT	3 cut(s)	160, 320, 692
Alw26I	GTCTC	4 cut(s)	24, 599, 742, 1089
AlwI	GGATC	2 cut(s)	187, 868
Ama87I	CYCGRG	2 cut(s)	594, 786
AoxI	GGCC	2 cut(s)	849, 980
ApeKI	GCWGC	2 cut(s)	872, 937
ApoI	RAATTY	1 cut(s)	52
AspA2I	CCTAGG	1 cut(s)	623
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	3 cut(s)	577, 700, 981
AsuHPI	GGTGA	2 cut(s)	496, 934
AvaI	CYCGRG	2 cut(s)	594, 786
AvaII	GGWCC	2 cut(s)	577, 700
AvrII	CCTAGG	1 cut(s)	623
BanII	GRGCYC	2 cut(s)	92, 804
BbvI	GCAGC	2 cut(s)	884, 949
BccI	CCATC	6 cut(s)	143, 395, 443, 485, 725, 886
BcgI	CGANNNNNNTGC	2 cut(s)	767, 801
BciT130I	CCWGG	3 cut(s)	27, 942, 1051
BclI	TGATCA	1 cut(s)	679
BcoDI	GTCTC	4 cut(s)	24, 599, 742, 1089
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	5 cut(s)	477, 624, 845, 975, 1108
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	3 cut(s)	849, 873, 938
BlnI	CCTAGG	1 cut(s)	623
BlsI	GCNGC	3 cut(s)	850, 874, 939
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	3 cut(s)	27, 942, 1051
Bme18I	GGWCC	2 cut(s)	577, 700
BmeT110I	CYCGRG	2 cut(s)	594, 786
BmgT120I	GGNCC	3 cut(s)	577, 700, 981
BmiI	GGNNCC	4 cut(s)	701, 803, 946, 1026
BmrFI	CCNGG	3 cut(s)	27, 942, 1051
BmsI	GCATC	1 cut(s)	519
BpmI	CTGGAG	2 cut(s)	30, 48
Bpu10I	CCTNAGC	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	678
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	623, 1050, 1091
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bsc4I	CCNNNNNNNGG	2 cut(s)	692, 1056
Bse118I	RCCGGY	1 cut(s)	978
Bse8I	GATNNNNATC	1 cut(s)	678
BseBI	CCWGG	3 cut(s)	27, 942, 1051
BseDI	CCNNGG	3 cut(s)	623, 1050, 1091
BseGI	GGATG	9 cut(s)	154, 211, 451, 534, 655, 736, 1000, 1009, 1086
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	2 cut(s)	692, 1056
BseMII	CTCAG	1 cut(s)	105
BseRI	GAGGAG	1 cut(s)	833
BseXI	GCAGC	2 cut(s)	884, 949
BshFI	GGCC	2 cut(s)	851, 982
BsiHKCI	CYCGRG	2 cut(s)	594, 786
BsiSI	CCGG	1 cut(s)	979
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	2 cut(s)	692, 1056
BsmAI	GTCTC	4 cut(s)	24, 599, 742, 1089
BsmFI	GGGAC	1 cut(s)	713
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	851, 982
Bso31I	GGTCTC	1 cut(s)	24
BsoBI	CYCGRG	2 cut(s)	594, 786
Bsp1286I	GDGCHC	2 cut(s)	92, 804
Bsp143I	GATC	5 cut(s)	179, 299, 334, 679, 860
BspACI	CCGC	2 cut(s)	766, 848
BspANI	GGCC	2 cut(s)	851, 982
BspCNI	CTCAG	1 cut(s)	104
BspLI	GGNNCC	4 cut(s)	701, 803, 946, 1026
BspPI	GGATC	2 cut(s)	187, 868
BspTNI	GGTCTC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	978
BssAI	RCCGGY	1 cut(s)	978
BssECI	CCNNGG	3 cut(s)	623, 1050, 1091
BssMI	GATC	5 cut(s)	179, 299, 334, 679, 860
BssT1I	CCWWGG	2 cut(s)	623, 1091
Bst2UI	CCWGG	3 cut(s)	27, 942, 1051
Bst4CI	ACNGT	3 cut(s)	464, 484, 571
Bst6I	CTCTTC	3 cut(s)	290, 380, 597
BstC8I	GCNNGC	3 cut(s)	768, 780, 980
BstDEI	CTNAG	2 cut(s)	91, 533
BstENI	CCTNNNNNAGG	1 cut(s)	1054
BstF5I	GGATG	9 cut(s)	154, 211, 451, 534, 655, 736, 1000, 1009, 1086
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	5 cut(s)	182, 302, 337, 682, 863
BstMAI	GTCTC	4 cut(s)	24, 599, 742, 1089
BstMBI	GATC	5 cut(s)	179, 299, 334, 679, 860
BstNI	CCWGG	3 cut(s)	27, 942, 1051
BstNSI	RCATGY	1 cut(s)	899
BstSCI	CCNGG	3 cut(s)	25, 940, 1049
BstV1I	GCAGC	2 cut(s)	884, 949
BstX2I	RGATCY	2 cut(s)	179, 334
BstYI	RGATCY	2 cut(s)	179, 334
BsuRI	GGCC	2 cut(s)	851, 982
BtsCI	GGATG	9 cut(s)	154, 211, 451, 534, 655, 736, 1000, 1009, 1086
Cac8I	GCNNGC	3 cut(s)	768, 780, 980
CfoI	GCGC	1 cut(s)	381
Cfr10I	RCCGGY	1 cut(s)	978
Cfr13I	GGNCC	3 cut(s)	577, 700, 981
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	211, 480
CviAII	CATG	5 cut(s)	439, 806, 884, 896, 958
CviQI	GTAC	2 cut(s)	211, 480
DdeI	CTNAG	2 cut(s)	91, 533
DpnI	GATC	5 cut(s)	181, 301, 336, 681, 862
DpnII	GATC	5 cut(s)	179, 299, 334, 679, 860
Eam1104I	CTCTTC	3 cut(s)	290, 380, 597
EarI	CTCTTC	3 cut(s)	290, 380, 597
Eco130I	CCWWGG	2 cut(s)	623, 1091
Eco24I	GRGCYC	2 cut(s)	92, 804
Eco31I	GGTCTC	1 cut(s)	24
Eco47I	GGWCC	2 cut(s)	577, 700
Eco57I	CTGAAG	1 cut(s)	561
Eco88I	CYCGRG	2 cut(s)	594, 786
EcoNI	CCTNNNNNAGG	1 cut(s)	1054
EcoRII	CCWGG	3 cut(s)	25, 940, 1049
EcoT14I	CCWWGG	2 cut(s)	623, 1091
EcoT38I	GRGCYC	2 cut(s)	92, 804
ErhI	CCWWGG	2 cut(s)	623, 1091
FaeI	CATG	5 cut(s)	442, 809, 887, 899, 961
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	5 cut(s)	438, 805, 883, 895, 957
FauI	CCCGC	1 cut(s)	759
FbaI	TGATCA	1 cut(s)	679
Fnu4HI	GCNGC	3 cut(s)	849, 873, 938
FokI	GGATG	9 cut(s)	161, 218, 458, 541, 662, 743, 996, 1007, 1093
FriOI	GRGCYC	2 cut(s)	92, 804
Fsp4HI	GCNGC	3 cut(s)	849, 873, 938
FspBI	CTAG	5 cut(s)	477, 624, 845, 975, 1108
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	3 cut(s)	849, 873, 938
GsuI	CTGGAG	2 cut(s)	30, 48
HaeIII	GGCC	2 cut(s)	851, 982
HapII	CCGG	1 cut(s)	979
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	5 cut(s)	442, 809, 887, 899, 961
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	2 cut(s)	1074, 1096
HpaII	CCGG	1 cut(s)	979
HphI	GGTGA	2 cut(s)	496, 934
Hpy166II	GTNNAC	1 cut(s)	842
Hpy188I	TCNGA	8 cut(s)	148, 205, 259, 331, 352, 364, 460, 1007
Hpy188III	TCNNGA	5 cut(s)	132, 234, 668, 788, 1078
Hpy8I	GTNNAC	1 cut(s)	842
HpyAV	CCTTC	8 cut(s)	79, 97, 169, 607, 723, 785, 961, 1015
HpyCH4III	ACNGT	3 cut(s)	464, 484, 571
HpyCH4V	TGCA	2 cut(s)	740, 899
HpyF3I	CTNAG	2 cut(s)	91, 533
Hsp92II	CATG	5 cut(s)	442, 809, 887, 899, 961
HspAI	GCGC	1 cut(s)	379
KroI	GCCGGC	1 cut(s)	978
KroNI	GCCGGC	1 cut(s)	980
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	5 cut(s)	179, 299, 334, 679, 860
LmnI	GCTCC	3 cut(s)	807, 820, 1024
Lsp1109I	GCAGC	2 cut(s)	884, 949
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	5 cut(s)	477, 624, 845, 975, 1108
MalI	GATC	5 cut(s)	181, 301, 336, 681, 862
MboI	GATC	5 cut(s)	179, 299, 334, 679, 860
MboII	GAAGA	9 cut(s)	94, 222, 307, 344, 397, 520, 614, 683, 1096
MflI	RGATCY	2 cut(s)	179, 334
MhlI	GDGCHC	2 cut(s)	92, 804
MluCI	AATT	4 cut(s)	52, 498, 513, 629
MlyI	GAGTC	2 cut(s)	1083, 1090
MmeI	TCCRAC	4 cut(s)	501, 725, 972, 1030
MroNI	GCCGGC	1 cut(s)	978
MseI	TTAA	3 cut(s)	632, 645, 753
MslI	CAYNNNNRTG	1 cut(s)	894
MspI	CCGG	1 cut(s)	979
MspR9I	CCNGG	3 cut(s)	27, 942, 1051
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	3 cut(s)	27, 942, 1051
NaeI	GCCGGC	1 cut(s)	980
NdeII	GATC	5 cut(s)	179, 299, 334, 679, 860
NgoMIV	GCCGGC	1 cut(s)	978
NlaIII	CATG	5 cut(s)	442, 809, 887, 899, 961
NlaIV	GGNNCC	4 cut(s)	701, 803, 946, 1026
NspI	RCATGY	1 cut(s)	899
PaeR7I	CTCGAG	2 cut(s)	594, 786
PctI	GAATGC	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	980
PkrI	GCNGC	3 cut(s)	850, 874, 939
PleI	GAGTC	2 cut(s)	1082, 1090
PpsI	GAGTC	2 cut(s)	1082, 1090
Psp6I	CCWGG	3 cut(s)	25, 940, 1049
PspGI	CCWGG	3 cut(s)	25, 940, 1049
PspN4I	GGNNCC	4 cut(s)	701, 803, 946, 1026
PspPI	GGNCC	3 cut(s)	577, 700, 981
PspXI	VCTCGAGB	1 cut(s)	594
PsuI	RGATCY	2 cut(s)	179, 334
RsaI	GTAC	2 cut(s)	212, 481
RsaNI	GTAC	2 cut(s)	211, 480
RseI	CAYNNNNRTG	1 cut(s)	894
SaqAI	TTAA	3 cut(s)	632, 645, 753
SatI	GCNGC	3 cut(s)	849, 873, 938
Sau3AI	GATC	5 cut(s)	179, 299, 334, 679, 860
Sau96I	GGNCC	3 cut(s)	577, 700, 981
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	2 cut(s)	1083, 1090
ScrFI	CCNGG	3 cut(s)	27, 942, 1051
SduI	GDGCHC	2 cut(s)	92, 804
SfaNI	GCATC	1 cut(s)	519
Sfr274I	CTCGAG	2 cut(s)	594, 786
SinI	GGWCC	2 cut(s)	577, 700
SlaI	CTCGAG	2 cut(s)	594, 786
SmiMI	CAYNNNNRTG	1 cut(s)	894
SmlI	CTYRAG	3 cut(s)	161, 594, 786
SmoI	CTYRAG	3 cut(s)	161, 594, 786
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	4 cut(s)	52, 498, 513, 629
SsiI	CCGC	2 cut(s)	766, 848
SspMI	CTAG	5 cut(s)	477, 624, 845, 975, 1108
StyD4I	CCNGG	3 cut(s)	25, 940, 1049
StyI	CCWWGG	2 cut(s)	623, 1091
TaaI	ACNGT	3 cut(s)	464, 484, 571
TaqI	TCGA	4 cut(s)	302, 573, 595, 787
TaqII	GACCGA	2 cut(s)	276, 717
TasI	AATT	4 cut(s)	52, 498, 513, 629
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	1 cut(s)	851
Tru1I	TTAA	3 cut(s)	632, 645, 753
Tru9I	TTAA	3 cut(s)	632, 645, 753
TseI	GCWGC	2 cut(s)	872, 937
TspDTI	ATGAA	6 cut(s)	10, 189, 255, 330, 822, 1034
VpaK11BI	GGWCC	2 cut(s)	577, 700
XagI	CCTNNNNNAGG	1 cut(s)	1054
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	899
XcmI	CCANNNNNNNNNTGG	1 cut(s)	955
XhoI	CTCGAG	2 cut(s)	594, 786
XmaJI	CCTAGG	1 cut(s)	623
XspI	CTAG	5 cut(s)	477, 624, 845, 975, 1108
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.