Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002851

Physical Location & Seq

Genomic Coordinates Forward (+)

4519996 .. 4521599

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCAGAACAAAAAATATAGTATATCTGGTCAGGCAGATGATGAATACGACTTTGATGATGGTCCAATCAGAAAGTCTAAAAAGAAGCAGGGAAGTGATGATCGCAAGGTCACCCAGAAGAATACATTTGCAAATCGTTTCTCCATTCAGCAAGAACGCTGCCTTTTCTGCTTTGAAAATCCAAAGAGACCGGCGCATCTGGTTGTGGCAATTGGAAATTATTCATATTTGATGTTGCCACAGCAGAAGCCTGCTGTGGATGGCCATTGCTACATTTTGCCGATGCAGCATGTACTAGCCACAAGAACTCTTGATGATCATGTGTGGGAAGAAATTCGAAATTTCAAGAAATGCCTTATTATGATATTTGCGAAGCAAGAGAAGGATGTTGTCTTCCTTGAAACAGTGATGGGGTTAGCTCAACAGCGCCGCCACTGTATAATCGAGTGTATTCCTTTGCCCCAGGATATAGCTAAAGACGCTCCATTATATTTTAAAAAGCTGAAGATGAGTGGAGCCAACACAATGCCAAAAAAACTTATTGATACAAGTGTAAAGGGACTGCGAGGTTCAGTTCCAGCTAATTTTCCATATTTCCACGTGGAGTTTGGTTTAAAGAAGGGGTTTGTCCACGTGATTGATGATGAAACACAGTTCAATAGCAGCCTTGGCCTGAATGTTATAAGAGGCATGCTAGAGTTGCCGGCAGAAGACATGCATCGTCGTGGGCGATATGAGCCAGTGGAAGCGCAAAAGCAAGCCGTTAAGAGGTTTGATCAAGATTGGGCGCCGTTTGACTGGACAAAGCAGCTTCACCAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CwfJ_C_1 CwfJ_C_2

Protein Analysis

274

Amino Acids

31.74

Weight (kDa)

8.99

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CwfJ_C_1	PF04677	46 - 166	1.6e-41	Protein similar to CwfJ C-terminal
CwfJ_C_2	PF04676	176 - 268	1.8e-25	Protein similar to CwfJ C-terminus 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56290
fragaria_vesca	FvH4_4g02820 FvH4_4g02820 FvH4_4g02820 FvH4_4g02820
malus_domestica	MD13G1208100.v1.1 MD16G1209600.v1.1
prunus_persica	Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1 Prupe.1G031700_v2.0.a1
pyrus_communis	pycom13g18020 pycom16g17690
rosa_chinensis	RchiOBHm_Chr4g0390791 RchiOBHm_Chr5g0000461
rosa_laevigata	RLG00000009911 RLG00000030869
rosa_multiflora	Rmu_sc0000171.1_g000026 Rmu_sc0001380.1_g000027 Rmu_sc0003949.1_g000006
rosa_roxburghii	Rroxscaffold_1G00075700 Rroxscaffold_5G00336660 Rroxscaffold_5G00336680 Rroxscaffold_5G00336690
rosa_rugosa	Rorug03G0331500 Rorug03G0331500 Rorug04G0383800
rosa_samantha	Rh4AG033200 Rh4BG027000 Rh4CG036800 Rh4DG030000 Rh5AG003800 Rh5BG005000 Rh5CG004100 Rh5DG004000
rosa_wichuraiana	Rw5G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	683
AccB1I	GGYRCC	1 cut(s)	787
AciI	CCGC	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	2 cut(s)	333, 340
AcuI	CTGAAG	1 cut(s)	524
AcvI	CACGTG	2 cut(s)	601, 634
AcyI	GRCGYC	1 cut(s)	788
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	768
AgsI	TTSAA	4 cut(s)	176, 346, 401, 658
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	5 cut(s)	419, 473, 502, 581, 811
AluI	AGCT	5 cut(s)	419, 473, 502, 581, 811
Alw26I	GTCTC	1 cut(s)	181
AoxI	GGCC	2 cut(s)	262, 670
ApeKI	GCWGC	4 cut(s)	159, 286, 663, 808
ApoI	RAATTY	2 cut(s)	333, 340
Asp700I	GAANNNNTTC	2 cut(s)	220, 333
AspLEI	GCGC	4 cut(s)	196, 429, 751, 790
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	103, 806
AsuII	TTCGAA	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	62
BaeI	ACNNNNGTAYC	2 cut(s)	537, 570
BalI	TGGCCA	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	787
BbrPI	CACGTG	2 cut(s)	601, 634
BbsI	GAAGAC	2 cut(s)	385, 717
BbvI	GCAGC	4 cut(s)	146, 298, 675, 820
BccI	CCATC	3 cut(s)	53, 254, 403
BceAI	ACGGC	2 cut(s)	746, 775
BciT130I	CCWGG	1 cut(s)	464
BclI	TGATCA	2 cut(s)	316, 775
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	2 cut(s)	296, 695
BfoI	RGCGCY	2 cut(s)	430, 791
BisI	GCNGC	5 cut(s)	160, 287, 430, 664, 809
BlsI	GCNGC	5 cut(s)	161, 288, 431, 665, 810
Bme1390I	CCNGG	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	517, 789
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	3 cut(s)	205, 273, 727
BpiI	GAAGAC	2 cut(s)	385, 717
Bpu14I	TTCGAA	1 cut(s)	337
BsaAI	YACGTR	2 cut(s)	601, 634
BsaHI	GRCGYC	1 cut(s)	788
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	462, 667
Bsc4I	CCNNNNNNNGG	1 cut(s)	768
Bse118I	RCCGGY	2 cut(s)	190, 703
Bse1I	ACTGG	2 cut(s)	740, 803
Bse3DI	GCAATG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	2 cut(s)	462, 667
BseGI	GGATG	2 cut(s)	265, 391
BseLI	CCNNNNNNNGG	1 cut(s)	768
BseMI	GCAATG	1 cut(s)	265
BseNI	ACTGG	2 cut(s)	740, 803
BseXI	GCAGC	4 cut(s)	146, 298, 675, 820
BshFI	GGCC	2 cut(s)	264, 672
BshNI	GGYRCC	1 cut(s)	787
BsiSI	CCGG	2 cut(s)	191, 704
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	1 cut(s)	768
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	573
BsnI	GGCC	2 cut(s)	264, 672
Bso31I	GGTCTC	1 cut(s)	181
Bsp119I	TTCGAA	1 cut(s)	337
Bsp143I	GATC	3 cut(s)	100, 316, 775
BspACI	CCGC	1 cut(s)	430
BspANI	GGCC	2 cut(s)	264, 672
BspLI	GGNNCC	2 cut(s)	517, 789
BspT104I	TTCGAA	1 cut(s)	337
BspT107I	GGYRCC	1 cut(s)	787
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	265
BsrFI	RCCGGY	2 cut(s)	190, 703
BsrI	ACTGG	2 cut(s)	740, 803
BssAI	RCCGGY	2 cut(s)	190, 703
BssECI	CCNNGG	2 cut(s)	462, 667
BssMI	GATC	3 cut(s)	100, 316, 775
BssNI	GRCGYC	1 cut(s)	788
BssT1I	CCWWGG	1 cut(s)	667
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	3 cut(s)	406, 437, 654
BstACI	GRCGYC	1 cut(s)	788
BstBAI	YACGTR	2 cut(s)	601, 634
BstBI	TTCGAA	1 cut(s)	337
BstC8I	GCNNGC	4 cut(s)	252, 692, 705, 759
BstEII	GGTNACC	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	265, 391
BstH2I	RGCGCY	2 cut(s)	430, 791
BstHHI	GCGC	4 cut(s)	196, 429, 751, 790
BstKTI	GATC	3 cut(s)	103, 319, 778
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	3 cut(s)	100, 316, 775
BstMWI	GCNNNNNNNGC	6 cut(s)	168, 286, 479, 669, 700, 736
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	3 cut(s)	293, 694, 718
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	462
BstV1I	GCAGC	4 cut(s)	146, 298, 675, 820
BstV2I	GAAGAC	2 cut(s)	385, 717
BsuRI	GGCC	2 cut(s)	264, 672
BtsCI	GGATG	2 cut(s)	265, 391
BtsIMutI	CAGTG	3 cut(s)	411, 433, 747
Cac8I	GCNNGC	4 cut(s)	252, 692, 705, 759
CfoI	GCGC	4 cut(s)	196, 429, 751, 790
Cfr10I	RCCGGY	2 cut(s)	190, 703
Cfr13I	GGNCC	1 cut(s)	62
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	4 cut(s)	290, 320, 691, 715
CviQI	GTAC	1 cut(s)	293
DinI	GGCGCC	1 cut(s)	789
DpnI	GATC	3 cut(s)	102, 318, 777
DpnII	GATC	3 cut(s)	100, 316, 775
DraI	TTTAAA	2 cut(s)	496, 615
EaeI	YGGCCR	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	667
Eco31I	GGTCTC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	524
Eco72I	CACGTG	2 cut(s)	601, 634
Eco91I	GGTNACC	1 cut(s)	109
EcoO65I	GGTNACC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	667
EcoT22I	ATGCAT	1 cut(s)	720
EgeI	GGCGCC	1 cut(s)	789
EheI	GGCGCC	1 cut(s)	789
ErhI	CCWWGG	1 cut(s)	667
FaeI	CATG	4 cut(s)	293, 323, 694, 718
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	4 cut(s)	289, 319, 690, 714
FbaI	TGATCA	2 cut(s)	316, 775
Fnu4HI	GCNGC	5 cut(s)	160, 287, 430, 664, 809
FokI	GGATG	2 cut(s)	272, 398
Fsp4HI	GCNGC	5 cut(s)	160, 287, 430, 664, 809
FspBI	CTAG	2 cut(s)	296, 695
GlaI	GCGC	4 cut(s)	195, 428, 750, 789
GluI	GCNGC	5 cut(s)	160, 287, 430, 664, 809
HaeII	RGCGCY	2 cut(s)	430, 791
HaeIII	GGCC	2 cut(s)	264, 672
HapII	CCGG	2 cut(s)	191, 704
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	4 cut(s)	196, 429, 751, 790
Hin1I	GRCGYC	1 cut(s)	788
Hin1II	CATG	4 cut(s)	293, 323, 694, 718
Hin6I	GCGC	4 cut(s)	194, 427, 749, 788
HinP1I	GCGC	4 cut(s)	194, 427, 749, 788
HpaII	CCGG	2 cut(s)	191, 704
HphI	GGTGA	2 cut(s)	103, 806
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	3 cut(s)	311, 346, 779
Hpy8I	GTNNAC	1 cut(s)	631
Hpy99I	CGWCG	1 cut(s)	726
HpyAV	CCTTC	2 cut(s)	376, 613
HpyCH4III	ACNGT	3 cut(s)	406, 437, 654
HpyCH4IV	ACGT	2 cut(s)	600, 633
HpyCH4V	TGCA	4 cut(s)	4, 131, 286, 718
HpyF10VI	GCNNNNNNNGC	6 cut(s)	168, 286, 479, 669, 700, 736
HpySE526I	ACGT	2 cut(s)	600, 633
Hsp92I	GRCGYC	1 cut(s)	788
Hsp92II	CATG	4 cut(s)	293, 323, 694, 718
HspAI	GCGC	4 cut(s)	194, 427, 749, 788
KasI	GGCGCC	1 cut(s)	787
KroI	GCCGGC	1 cut(s)	703
KroNI	GCCGGC	1 cut(s)	705
Ksp22I	TGATCA	2 cut(s)	316, 775
Kzo9I	GATC	3 cut(s)	100, 316, 775
LmnI	GCTCC	2 cut(s)	487, 515
Lsp1109I	GCAGC	4 cut(s)	146, 298, 675, 820
LweI	GCATC	3 cut(s)	205, 273, 727
MaeI	CTAG	2 cut(s)	296, 695
MaeII	ACGT	2 cut(s)	600, 633
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	3 cut(s)	102, 318, 777
MboI	GATC	3 cut(s)	100, 316, 775
MboII	GAAGA	5 cut(s)	130, 341, 385, 517, 722
MfeI	CAATTG	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	5 cut(s)	210, 217, 333, 340, 583
MluNI	TGGCCA	1 cut(s)	264
Mly113I	GGCGCC	1 cut(s)	788
MnlI	CCTC	3 cut(s)	560, 680, 762
Mox20I	TGGCCA	1 cut(s)	264
Mph1103I	ATGCAT	1 cut(s)	720
MroNI	GCCGGC	1 cut(s)	703
MroXI	GAANNNNTTC	2 cut(s)	220, 333
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	3 cut(s)	495, 614, 765
MslI	CAYNNNNRTG	1 cut(s)	723
Msp20I	TGGCCA	1 cut(s)	264
MspI	CCGG	2 cut(s)	191, 704
MspR9I	CCNGG	1 cut(s)	464
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	464
MwoI	GCNNNNNNNGC	6 cut(s)	168, 286, 479, 669, 700, 736
NaeI	GCCGGC	1 cut(s)	705
NarI	GGCGCC	1 cut(s)	788
NdeII	GATC	3 cut(s)	100, 316, 775
NgoMIV	GCCGGC	1 cut(s)	703
NlaIII	CATG	4 cut(s)	293, 323, 694, 718
NlaIV	GGNNCC	2 cut(s)	517, 789
NmuCI	GTSAC	1 cut(s)	109
NsiI	ATGCAT	1 cut(s)	720
NspI	RCATGY	3 cut(s)	293, 694, 718
NspV	TTCGAA	1 cut(s)	337
PaeI	GCATGC	1 cut(s)	694
PcsI	WCGNNNNNNNCGW	1 cut(s)	727
PdiI	GCCGGC	1 cut(s)	705
PdmI	GAANNNNTTC	2 cut(s)	220, 333
PkrI	GCNGC	5 cut(s)	161, 288, 431, 665, 810
PluTI	GGCGCC	1 cut(s)	791
PmaCI	CACGTG	2 cut(s)	601, 634
PmlI	CACGTG	2 cut(s)	601, 634
Ppu21I	YACGTR	2 cut(s)	601, 634
PsiI	TTATAA	1 cut(s)	683
Psp6I	CCWGG	1 cut(s)	462
PspCI	CACGTG	2 cut(s)	601, 634
PspEI	GGTNACC	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	2 cut(s)	517, 789
PspPI	GGNCC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	723
SaqAI	TTAA	3 cut(s)	495, 614, 765
SatI	GCNGC	5 cut(s)	160, 287, 430, 664, 809
Sau3AI	GATC	3 cut(s)	100, 316, 775
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	464
SfaNI	GCATC	3 cut(s)	205, 273, 727
SfoI	GGCGCC	1 cut(s)	789
SfuI	TTCGAA	1 cut(s)	337
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	723
SphI	GCATGC	1 cut(s)	694
Sse9I	AATT	5 cut(s)	210, 217, 333, 340, 583
SsiI	CCGC	1 cut(s)	430
SspDI	GGCGCC	1 cut(s)	787
SspMI	CTAG	2 cut(s)	296, 695
StyD4I	CCNGG	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	667
TaaI	ACNGT	3 cut(s)	406, 437, 654
TaiI	ACGT	2 cut(s)	603, 636
TaqI	TCGA	2 cut(s)	337, 444
TasI	AATT	5 cut(s)	210, 217, 333, 340, 583
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	1 cut(s)	432
Tru1I	TTAA	3 cut(s)	495, 614, 765
Tru9I	TTAA	3 cut(s)	495, 614, 765
TscAI	CASTG	3 cut(s)	411, 440, 747
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	4 cut(s)	159, 286, 663, 808
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	3 cut(s)	57, 213, 660
TspRI	CASTG	3 cut(s)	411, 440, 747
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	2 cut(s)	333, 340
XceI	RCATGY	3 cut(s)	293, 694, 718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	605
XmnI	GAANNNNTTC	2 cut(s)	220, 333
XspI	CTAG	2 cut(s)	296, 695
Zsp2I	ATGCAT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.