RchiOBHm_Chr5g0021621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017433
Physical Location & Seq
Reverse (-)
15765948 .. 15768713
2766 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30167

Sequence Viewer

Length: 273 bp
ATGGAGGAGCTTCTTATTCAGTGGCTGCACCGGGCCCGATTCTTCACTGAGAGTCTCCAACACAGCCCACCGAGCCCAATCAACCTGATCCGACCGGCTTTTCGAGATCGAGATAAACCCCTCCGTTCTCGAGACCCGATCCCTGGTGGCCAGTATGGAGAACCACTCGTCGAGCCCAACACGGCGTTATTTAATCTCGTCCTCAAGGCTATGCACGGTGGCAAAGAGTCGGAAGTCGCTAATGTTGAGTACAGTGAATCAGTGGTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.24

Weight (kDa)

5.56

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 82, 133
AcoI YGGCCR 1 cut(s) 148
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 143
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw26I GTCTC 2 cut(s) 59, 126
AlwI GGATC 2 cut(s) 82, 133
AlwNI CAGNNNCTG 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 2 cut(s) 33, 148
ApaI GGGCCC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 25
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
AspS9I GGNCC 2 cut(s) 33, 34
AsuC2I CCSGG 1 cut(s) 32
AvaI CYCGRG 1 cut(s) 129
BaeGI GKGCMC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 150
BanII GRGCYC 3 cut(s) 37, 77, 177
BbvI GCAGC 1 cut(s) 12
BceAI ACGGC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 144
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 59, 126
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 2 cut(s) 32, 144
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 33, 34
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 2 cut(s) 32, 144
BplI GAGNNNNNCTC 2 cut(s) 150, 182
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 11
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 2 cut(s) 35, 150
BsiEI CGRYCG 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 2 cut(s) 31, 95
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 2 cut(s) 59, 126
BsnI GGCC 2 cut(s) 35, 150
Bso31I GGTCTC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 129
Bsp120I GGGCCC 1 cut(s) 33
Bsp1286I GDGCHC 3 cut(s) 37, 77, 177
Bsp143I GATC 3 cut(s) 87, 106, 138
BspANI GGCC 2 cut(s) 35, 150
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 35
BspPI GGATC 2 cut(s) 82, 133
BspTNI GGTCTC 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 3 cut(s) 87, 106, 138
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 218, 254
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 3 cut(s) 90, 109, 141
BstMAI GTCTC 2 cut(s) 59, 126
BstMBI GATC 3 cut(s) 87, 106, 138
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 2 cut(s) 30, 142
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 12
BsuRI GGCC 2 cut(s) 35, 150
BtsIMutI CAGTG 4 cut(s) 26, 45, 259, 267
CaiI CAGNNNCTG 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 33, 34
Csp6I GTAC 1 cut(s) 250
CviJI RGCY 9 cut(s) 10, 25, 35, 66, 75, 98, 150, 175, 209
CviKI_1 RGCY 9 cut(s) 10, 25, 35, 66, 75, 98, 150, 175, 209
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 48
DpnI GATC 3 cut(s) 89, 108, 140
DpnII GATC 3 cut(s) 87, 106, 138
EaeI YGGCCR 1 cut(s) 148
Eco24I GRGCYC 3 cut(s) 37, 77, 177
Eco31I GGTCTC 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 142
EcoT38I GRGCYC 3 cut(s) 37, 77, 177
FaiI YATR 2 cut(s) 156, 212
Fnu4HI GCNGC 1 cut(s) 26
FriOI GRGCYC 3 cut(s) 37, 77, 177
Fsp4HI GCNGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 26
HaeIII GGCC 2 cut(s) 35, 150
HapII CCGG 2 cut(s) 31, 95
HinfI GANTC 4 cut(s) 39, 52, 227, 257
HpaII CCGG 2 cut(s) 31, 95
Hpy188I TCNGA 2 cut(s) 92, 232
Hpy188III TCNNGA 4 cut(s) 104, 110, 129, 131
Hpy99I CGWCG 1 cut(s) 173
HpyCH4III ACNGT 2 cut(s) 218, 254
HpyCH4V TGCA 2 cut(s) 28, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 48
Kzo9I GATC 3 cut(s) 87, 106, 138
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 6 cut(s) 44, 98, 108, 129, 156, 164
Lsp1109I GCAGC 1 cut(s) 12
MalI GATC 3 cut(s) 89, 108, 140
MboI GATC 3 cut(s) 87, 106, 138
MboII GAAGA 1 cut(s) 34
MhlI GDGCHC 3 cut(s) 37, 77, 177
MlsI TGGCCA 1 cut(s) 150
MluNI TGGCCA 1 cut(s) 150
MlyI GAGTC 2 cut(s) 61, 236
MmeI TCCRAC 3 cut(s) 82, 115, 210
MnlI CCTC 2 cut(s) 131, 212
Mox20I TGGCCA 1 cut(s) 150
MscI TGGCCA 1 cut(s) 150
MseI TTAA 1 cut(s) 192
Msp20I TGGCCA 1 cut(s) 150
MspI CCGG 2 cut(s) 31, 95
MspR9I CCNGG 2 cut(s) 32, 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 72
NciI CCSGG 1 cut(s) 32
NdeII GATC 3 cut(s) 87, 106, 138
NlaIV GGNNCC 1 cut(s) 35
PaeR7I CTCGAG 1 cut(s) 129
PfeI GAWTC 2 cut(s) 39, 257
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 2 cut(s) 60, 235
PpsI GAGTC 2 cut(s) 60, 235
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 35
PspOMI GGGCCC 1 cut(s) 33
PspPI GGNCC 2 cut(s) 33, 34
PstNI CAGNNNCTG 1 cut(s) 25
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 3 cut(s) 87, 106, 138
Sau96I GGNCC 2 cut(s) 33, 34
SchI GAGTC 2 cut(s) 61, 236
ScrFI CCNGG 2 cut(s) 32, 144
SduI GDGCHC 3 cut(s) 37, 77, 177
SetI ASST 2 cut(s) 12, 87
Sfr274I CTCGAG 1 cut(s) 129
SlaI CTCGAG 1 cut(s) 129
SmlI CTYRAG 2 cut(s) 129, 203
SmoI CTYRAG 2 cut(s) 129, 203
StyD4I CCNGG 2 cut(s) 30, 142
TaaI ACNGT 2 cut(s) 218, 254
TaqI TCGA 4 cut(s) 103, 109, 130, 171
TatI WGTACW 1 cut(s) 249
TfiI GAWTC 2 cut(s) 39, 257
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 4 cut(s) 26, 52, 259, 267
TseI GCWGC 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 4 cut(s) 26, 52, 259, 267
XhoI CTCGAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.