Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017433

Physical Location & Seq

Genomic Coordinates Reverse (-)

45253180 .. 45259445

Gene Structure 6266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCGGGGAAGGAGATTTCGTGGAGAACAATTTGGGATTTTTCGAGTCCAAGAGGATTGGGCTTCGGCGGAGTAGTCCGGTTAAGCATGGGATTAGATCGCCAAGCTCCCCTAAAGGTTCCGGGAAGTGATGCGAGCCAGCAAGGGGCAGCTACACTCAATTTCCTTGACTTGCGGACGATGAGTTCTTCTTCTGCTGCAATTGTAATTGCAATTCCAACTGCAATTGCAAGTGAGAGGAAGGAGCATTCCTCTTTTGCTCGAACTGCGGCTGTTCGGCATCGGTGGGTTCCGTTACCACGGCTCACGGCCTTCGTTTCGCGTGGTCGCTTTGAGATTGGTGTAGTTGCACGAGGCTTGGAAGTTCGGGGAGATATCATGCAGTTTTATGCATTGGAGCTGTGGTACGGTGTTCCATGCATATTCGGTGTCTTAACTTGTGATAATATGGAGCAGGCTTTAAATCGAGGTGGTGGTAAATCTGGAAATAAGGGTGCAGAGACTGCCTTGACAGCTGCACTTCCTAGAAAGGAAATTATTGAAGTTCTGGATATATTGCCTAGATGGTTTGTTTTACAATTTTGTAAATCGAACACAACATCTCTGTTAAAGGTGCTGGAATTTCTTTATGACCTTTTTGACATGTTTAGGGATGAGGGATACATTGCTACTGGTGTCCCGAAGTTTAGTCTTCAAATTTCAGGACAGGATTTTCAGACCAAGGAGAAGTCACTTTTGGGGGAGAGTTCAAAGACACTGCCCTCTTATCGGGGCTTCTCTAGTGCAAAGTTGGAAGATCTCAAGACTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT

Protein Analysis

270

Amino Acids

29.77

Weight (kDa)

9.27

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DMRL_synthase	PF00885	130 - 172	5.2e-10	6,7-dimethyl-8-ribityllumazine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0495401 RchiOBHm_Chr5g0021621
rosa_laevigata	RLG00000001852
rosa_roxburghii	Rroxscaffold_1G00031930 Rroxscaffold_6G00395400 Rroxscaffold_7G00200900
rosa_samantha	Rh3BG058900 Rh3BG344300 Rh4AG091600 Rh4CG099900 Rh5AG275000 Rh6BG167100 Rh7AG008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	322
AciI	CCGC	4 cut(s)	5, 69, 175, 269
AcsI	RAATTY	2 cut(s)	620, 696
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	2 cut(s)	145, 768
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	3 cut(s)	542, 695, 750
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AloI	GAACNNNNNNTCC	2 cut(s)	169, 201
AluBI	AGCT	4 cut(s)	107, 152, 400, 515
AluI	AGCT	4 cut(s)	107, 152, 400, 515
Alw26I	GTCTC	1 cut(s)	494
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	3 cut(s)	149, 197, 515
ApoI	RAATTY	2 cut(s)	620, 696
AsuC2I	CCSGG	1 cut(s)	123
BauI	CACGAG	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	683
BbvI	GCAGC	3 cut(s)	161, 184, 502
BccI	CCATC	1 cut(s)	558
BceAI	ACGGC	2 cut(s)	317, 324
BciVI	GTATCC	1 cut(s)	653
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	3 cut(s)	525, 561, 780
BfuI	GTATCC	1 cut(s)	653
BglII	AGATCT	1 cut(s)	796
BisI	GCNGC	4 cut(s)	150, 198, 270, 516
BlsI	GCNGC	4 cut(s)	151, 199, 271, 517
Bme1390I	CCNGG	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	120, 291
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	121, 289
BpiI	GAAGAC	1 cut(s)	683
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BpuEI	CTTGAG	1 cut(s)	785
BpuMI	CCSGG	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	299, 720
BsaWI	WCCGGW	1 cut(s)	78
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 389, 419
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 768
Bse1I	ACTGG	1 cut(s)	676
Bse3DI	GCAATG	1 cut(s)	663
BseDI	CCNNGG	2 cut(s)	299, 720
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	2 cut(s)	145, 768
BseMI	GCAATG	1 cut(s)	663
BseNI	ACTGG	1 cut(s)	676
BseXI	GCAGC	3 cut(s)	161, 184, 502
BsgI	GTGCAG	2 cut(s)	501, 516
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	311
BsiSI	CCGG	2 cut(s)	79, 122
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	2 cut(s)	145, 768
BsmAI	GTCTC	1 cut(s)	494
BsmFI	GGGAC	1 cut(s)	662
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	97, 796
BspACI	CCGC	4 cut(s)	5, 69, 175, 269
BspANI	GGCC	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	120, 291
BsrDI	GCAATG	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	676
BssECI	CCNNGG	2 cut(s)	299, 720
BssMI	GATC	2 cut(s)	97, 796
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	720
Bst2BI	CACGAG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	136, 140, 456
BstDSI	CCRYGG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	658
BstFNI	CGCG	1 cut(s)	322
BstKTI	GATC	2 cut(s)	100, 799
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	2 cut(s)	97, 796
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 503, 512
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	1 cut(s)	121
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	3 cut(s)	161, 184, 502
BstV2I	GAAGAC	1 cut(s)	683
BstX2I	RGATCY	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	796
BsuI	GTATCC	1 cut(s)	653
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	658
BtsI	GCAGTG	1 cut(s)	755
BtsIMutI	CAGTG	1 cut(s)	755
Cac8I	GCNNGC	3 cut(s)	136, 140, 456
CaiI	CAGNNNCTG	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	4 cut(s)	88, 379, 417, 643
CviQI	GTAC	1 cut(s)	406
DpnI	GATC	2 cut(s)	99, 798
DpnII	GATC	2 cut(s)	97, 796
DraI	TTTAAA	1 cut(s)	462
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	720
Eco32I	GATATC	1 cut(s)	376
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	720
EcoT22I	ATGCAT	2 cut(s)	394, 422
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	4 cut(s)	91, 382, 420, 646
FaiI	YATR	9 cut(s)	89, 380, 390, 418, 422, 449, 554, 630, 644
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	4 cut(s)	87, 378, 416, 642
Fnu4HI	GCNGC	4 cut(s)	150, 198, 270, 516
FokI	GGATG	1 cut(s)	665
Fsp4HI	GCNGC	4 cut(s)	150, 198, 270, 516
FspBI	CTAG	3 cut(s)	525, 561, 780
GluI	GCNGC	4 cut(s)	150, 198, 270, 516
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	2 cut(s)	79, 122
Hin1II	CATG	4 cut(s)	91, 382, 420, 646
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	2 cut(s)	79, 122
Hpy188I	TCNGA	1 cut(s)	717
Hpy188III	TCNNGA	5 cut(s)	483, 548, 679, 702, 802
HpyAV	CCTTC	3 cut(s)	4, 235, 322
HpyCH4III	ACNGT	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 503, 512
Hsp92II	CATG	4 cut(s)	91, 382, 420, 646
Kzo9I	GATC	2 cut(s)	97, 796
LmnI	GCTCC	4 cut(s)	112, 244, 397, 451
Lsp1109I	GCAGC	3 cut(s)	161, 184, 502
LweI	GCATC	2 cut(s)	121, 289
MaeI	CTAG	3 cut(s)	525, 561, 780
MaeIII	GTNAC	2 cut(s)	294, 729
MalI	GATC	2 cut(s)	99, 798
MboI	GATC	2 cut(s)	97, 796
MboII	GAAGA	4 cut(s)	180, 183, 683, 806
MfeI	CAATTG	2 cut(s)	201, 225
MflI	RGATCY	1 cut(s)	796
MlyI	GAGTC	1 cut(s)	55
MmeI	TCCRAC	2 cut(s)	242, 771
MnlI	CCTC	7 cut(s)	47, 231, 262, 347, 461, 649, 772
Mph1103I	ATGCAT	2 cut(s)	394, 422
MseI	TTAA	4 cut(s)	83, 434, 461, 608
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	2 cut(s)	79, 122
MspR9I	CCNGG	1 cut(s)	123
MunI	CAATTG	2 cut(s)	201, 225
Mva1269I	GAATGC	1 cut(s)	247
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	3 cut(s)	266, 503, 512
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	2 cut(s)	97, 796
NlaIII	CATG	4 cut(s)	91, 382, 420, 646
NlaIV	GGNNCC	2 cut(s)	120, 291
NmuCI	GTSAC	1 cut(s)	729
NsiI	ATGCAT	2 cut(s)	394, 422
NspI	RCATGY	1 cut(s)	646
PciI	ACATGT	1 cut(s)	642
PctI	GAATGC	1 cut(s)	247
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	151, 199, 271, 517
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PscI	ACATGT	1 cut(s)	642
PspN4I	GGNNCC	2 cut(s)	120, 291
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	796
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SaqAI	TTAA	4 cut(s)	83, 434, 461, 608
SatI	GCNGC	4 cut(s)	150, 198, 270, 516
Sau3AI	GATC	2 cut(s)	97, 796
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	8 cut(s)	109, 120, 154, 402, 472, 517, 615, 636
SfaNI	GCATC	2 cut(s)	121, 289
SmlI	CTYRAG	1 cut(s)	800
SmoI	CTYRAG	1 cut(s)	800
SsiI	CCGC	4 cut(s)	5, 69, 175, 269
SspMI	CTAG	3 cut(s)	525, 561, 780
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	1 cut(s)	410
TaqI	TCGA	4 cut(s)	44, 262, 466, 590
TauI	GCSGC	1 cut(s)	272
Tru1I	TTAA	4 cut(s)	83, 434, 461, 608
Tru9I	TTAA	4 cut(s)	83, 434, 461, 608
TscAI	CASTG	1 cut(s)	762
TseFI	GTSAC	1 cut(s)	729
TseI	GCWGC	3 cut(s)	149, 197, 515
Tsp45I	GTSAC	1 cut(s)	729
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	762
XapI	RAATTY	2 cut(s)	620, 696
XceI	RCATGY	1 cut(s)	646
XspI	CTAG	3 cut(s)	525, 561, 780
Zsp2I	ATGCAT	2 cut(s)	394, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.