Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017433

Physical Location & Seq

Genomic Coordinates Reverse (-)

21955874 .. 21957745

Gene Structure 1872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001852

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGAACCATGCGTCGAGCCCAACACGGCGTTATTTAATCTCGTCCTCAAGGCTATGCACGGTGGCAAAGAGTCCGAAGTCGCTAATGTTGAGTACAAATGATATGATGAAGTACTTCAGAGAGGATCTACATAGGCAGCTTCTTAGTACGTATTTTAAGAAGCAAGTCGATGGGCTTGAGATGCTGCAGAAGGTGCTGGAATTTCGTTATGACCTTTTTGACGTGTTTACGGATGAGGATTTTCAGACCATGAAAATCAGAAAGAAAGCTAATTGGTCCCCCAAGGAGAAGTCACTTTCTAGGGGAGAGTTCAAAGACACTGCCCTCTTATCGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT

Protein Analysis

114

Amino Acids

13.31

Weight (kDa)

9.41

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0495401 RchiOBHm_Chr5g0021621
rosa_laevigata	RLG00000001852
rosa_roxburghii	Rroxscaffold_1G00031930 Rroxscaffold_6G00395400 Rroxscaffold_7G00200900
rosa_samantha	Rh3BG058900 Rh3BG344300 Rh4AG091600 Rh4CG099900 Rh5AG275000 Rh6BG167100 Rh7AG008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	103
AfaI	GTAC	3 cut(s)	97, 116, 151
AfiI	CCNNNNNNNGG	1 cut(s)	334
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	316
AjiI	CACGTC	1 cut(s)	226
AluBI	AGCT	2 cut(s)	142, 272
AluI	AGCT	2 cut(s)	142, 272
AlwI	GGATC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	139, 187
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	151, 174
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	188
BisI	GCNGC	2 cut(s)	140, 188
BlsI	GCNGC	2 cut(s)	141, 189
BmcAI	AGTACT	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	279
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	281
BmsI	GCATC	1 cut(s)	174
BpuEI	CTTGAG	2 cut(s)	34, 200
BsaAI	YACGTR	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	151, 174
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	281
BspMAI	CTGCAG	1 cut(s)	192
BspPI	GGATC	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	64
BstAPI	GCANNNNNTGC	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 196
BstSFI	CTRYAG	1 cut(s)	188
BstSNI	TACGTA	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	151, 174
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	279
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	3 cut(s)	96, 115, 150
CviAII	CATG	2 cut(s)	11, 253
CviJI	RGCY	5 cut(s)	21, 55, 142, 178, 272
CviKI_1	RGCY	5 cut(s)	21, 55, 142, 178, 272
CviQI	GTAC	3 cut(s)	96, 115, 150
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco105I	TACGTA	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	2 cut(s)	14, 256
FaiI	YATR	6 cut(s)	12, 58, 107, 135, 213, 254
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	2 cut(s)	10, 252
Fnu4HI	GCNGC	2 cut(s)	140, 188
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	140, 188
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	2 cut(s)	140, 188
HgaI	GACGC	1 cut(s)	3
Hin1II	CATG	2 cut(s)	14, 256
HinfI	GANTC	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	4 cut(s)	78, 122, 249, 263
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	2 cut(s)	152, 225
HpyCH4V	TGCA	2 cut(s)	60, 190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 196
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	2 cut(s)	152, 225
Hsp92II	CATG	2 cut(s)	14, 256
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	1 cut(s)	185
Lsp1109I	GCAGC	2 cut(s)	151, 174
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	2 cut(s)	152, 225
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	2 cut(s)	203, 274
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	4 cut(s)	58, 118, 232, 338
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	2 cut(s)	38, 159
MwoI	GCNNNNNNNGC	2 cut(s)	184, 196
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	14, 256
NlaIV	GGNNCC	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	141, 189
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Ppu21I	YACGTR	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	279
PstI	CTGCAG	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	3 cut(s)	97, 116, 151
RsaNI	GTAC	3 cut(s)	96, 115, 150
SaqAI	TTAA	2 cut(s)	38, 159
SatI	GCNGC	2 cut(s)	140, 188
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	279
ScaI	AGTACT	1 cut(s)	116
SchI	GAGTC	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	6 cut(s)	144, 155, 198, 219, 228, 274
SfaNI	GCATC	1 cut(s)	174
SfcI	CTRYAG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	279
SmlI	CTYRAG	2 cut(s)	49, 179
SmoI	CTYRAG	2 cut(s)	49, 179
SnaBI	TACGTA	1 cut(s)	153
Sse9I	AATT	2 cut(s)	203, 274
SspMI	CTAG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	2 cut(s)	155, 228
TaqI	TCGA	2 cut(s)	17, 171
TasI	AATT	2 cut(s)	203, 274
TatI	WGTACW	2 cut(s)	95, 114
Tru1I	TTAA	2 cut(s)	38, 159
Tru9I	TTAA	2 cut(s)	38, 159
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	294
TseI	GCWGC	2 cut(s)	139, 187
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	2 cut(s)	125, 269
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	279
XapI	RAATTY	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	1 cut(s)	303
ZrmI	AGTACT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.