Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0017433

Physical Location & Seq

Genomic Coordinates Reverse (-)

19365705 .. 19367528

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG091600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCATGGTGGCAAAGAGTCCGAAGTCGCTAATGTTGAGTACAAACAGATTCAAGATCTTGAGAATGATATGATGAAGTACTTCAGAGAGGATCTGCATAGGCAGCTTCTTAGTACATATTTTAAGAAGCAAGTCGATGGGCTTGAGATGCTGCAGAAGGCACTTCCTAGAAAGGAAATTATTGTAGTTTTGGATATACTGCCTAGGTGGTTTGTTTTACAATTTTGCAAATCGAACACAACATCTCTGTTAAAGGTGTTGGAATTTCTTTATGACCTTTTTGACATGTTTACGGATGAGAAGTGTCACCATTTCTACACATATCAAGATATGATGCAATATGTAGAATATGCTCATAAAAACCAGCTTTCGATCTACTCACCAGATTTTCAGACCATGAAAATCAGAAAGAAAGCTAATTGGTCCCCCAAGGAGAAATCACTTTCTAGGGGAGAGTTCAAAGACACTGCCCTCTTATCGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT

Protein Analysis

161

Amino Acids

19.29

Weight (kDa)

6.96

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0495401 RchiOBHm_Chr5g0021621
rosa_laevigata	RLG00000001852
rosa_roxburghii	Rroxscaffold_1G00031930 Rroxscaffold_6G00395400 Rroxscaffold_7G00200900
rosa_samantha	Rh3BG058900 Rh3BG344300 Rh4AG091600 Rh4CG099900 Rh5AG275000 Rh6BG167100 Rh7AG008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	67
AfaI	GTAC	3 cut(s)	41, 80, 115
AfiI	CCNNNNNNNGG	1 cut(s)	478
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	53, 460
AluBI	AGCT	3 cut(s)	106, 367, 416
AluI	AGCT	3 cut(s)	106, 367, 416
AlwI	GGATC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	103, 151
ApoI	RAATTY	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	80
AspA2I	CCTAGG	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	299, 372
AvaII	GGWCC	1 cut(s)	423
AvrII	CCTAGG	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	115, 138
BccI	CCATC	1 cut(s)	131
BfaI	CTAG	3 cut(s)	168, 204, 447
BfmI	CTRYAG	1 cut(s)	152
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	2 cut(s)	104, 152
BlnI	CCTAGG	1 cut(s)	203
BlsI	GCNGC	2 cut(s)	105, 153
BmcAI	AGTACT	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	423
BmiI	GGNNCC	1 cut(s)	425
BmsI	GCATC	2 cut(s)	138, 324
BpuEI	CTTGAG	2 cut(s)	80, 164
BsaJI	CCNNGG	2 cut(s)	203, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
BseDI	CCNNGG	2 cut(s)	203, 429
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseXI	GCAGC	2 cut(s)	115, 138
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmFI	GGGAC	1 cut(s)	409
Bsp143I	GATC	3 cut(s)	55, 91, 372
BspLI	GGNNCC	1 cut(s)	425
BspMAI	CTGCAG	1 cut(s)	156
BspPI	GGATC	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	203, 429
BssMI	GATC	3 cut(s)	55, 91, 372
BssT1I	CCWWGG	2 cut(s)	203, 429
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	3 cut(s)	58, 94, 375
BstMBI	GATC	3 cut(s)	55, 91, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 148
BstNSI	RCATGY	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	115, 138
BstX2I	RGATCY	2 cut(s)	55, 91
BstYI	RGATCY	2 cut(s)	55, 91
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	465
Cfr13I	GGNCC	1 cut(s)	423
Csp6I	GTAC	3 cut(s)	40, 79, 114
CviAII	CATG	3 cut(s)	5, 286, 397
CviJI	RGCY	4 cut(s)	106, 142, 367, 416
CviKI_1	RGCY	4 cut(s)	106, 142, 367, 416
CviQI	GTAC	3 cut(s)	40, 79, 114
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	3 cut(s)	57, 93, 374
DpnII	GATC	3 cut(s)	55, 91, 372
Eco130I	CCWWGG	2 cut(s)	203, 429
Eco47I	GGWCC	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	203, 429
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	203, 429
FaeI	CATG	3 cut(s)	8, 289, 400
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	3 cut(s)	4, 285, 396
Fnu4HI	GCNGC	2 cut(s)	104, 152
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	2 cut(s)	104, 152
FspBI	CTAG	3 cut(s)	168, 204, 447
GluI	GCNGC	2 cut(s)	104, 152
Hin1II	CATG	3 cut(s)	8, 289, 400
HinfI	GANTC	2 cut(s)	17, 49
HphI	GGTGA	2 cut(s)	299, 372
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	4 cut(s)	22, 86, 393, 407
Hpy188III	TCNNGA	3 cut(s)	53, 59, 326
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	151
HpyCH4V	TGCA	5 cut(s)	4, 97, 154, 228, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 148
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	8, 289, 400
Kzo9I	GATC	3 cut(s)	55, 91, 372
LpnPI	CCDG	2 cut(s)	377, 396
Lsp1109I	GCAGC	2 cut(s)	115, 138
LweI	GCATC	2 cut(s)	138, 324
MaeI	CTAG	3 cut(s)	168, 204, 447
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	3 cut(s)	57, 93, 374
MboI	GATC	3 cut(s)	55, 91, 372
MflI	RGATCY	2 cut(s)	55, 91
MluCI	AATT	4 cut(s)	177, 221, 263, 418
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	2 cut(s)	82, 482
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	2 cut(s)	123, 251
MwoI	GCNNNNNNNGC	2 cut(s)	103, 148
NdeII	GATC	3 cut(s)	55, 91, 372
NlaIII	CATG	3 cut(s)	8, 289, 400
NlaIV	GGNNCC	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	289
PciI	ACATGT	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	105, 153
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PscI	ACATGT	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	156
PsuI	RGATCY	2 cut(s)	55, 91
RsaI	GTAC	3 cut(s)	41, 80, 115
RsaNI	GTAC	3 cut(s)	40, 79, 114
SaqAI	TTAA	2 cut(s)	123, 251
SatI	GCNGC	2 cut(s)	104, 152
Sau3AI	GATC	3 cut(s)	55, 91, 372
Sau96I	GGNCC	1 cut(s)	423
ScaI	AGTACT	1 cut(s)	80
SchI	GAGTC	1 cut(s)	26
SetI	ASST	6 cut(s)	108, 209, 258, 279, 369, 418
SfaNI	GCATC	2 cut(s)	138, 324
SfcI	CTRYAG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	423
SmlI	CTYRAG	2 cut(s)	59, 143
SmoI	CTYRAG	2 cut(s)	59, 143
Sse9I	AATT	4 cut(s)	177, 221, 263, 418
SspMI	CTAG	3 cut(s)	168, 204, 447
StyI	CCWWGG	2 cut(s)	203, 429
TaqI	TCGA	3 cut(s)	135, 233, 371
TasI	AATT	4 cut(s)	177, 221, 263, 418
TatI	WGTACW	3 cut(s)	39, 78, 113
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	123, 251
Tru9I	TTAA	2 cut(s)	123, 251
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	2 cut(s)	103, 151
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	89, 413
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	423
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	1 cut(s)	289
XmaJI	CCTAGG	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	3 cut(s)	168, 204, 447
ZrmI	AGTACT	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.