Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017433

Physical Location & Seq

Genomic Coordinates Forward (+)

48367383 .. 48385776

Gene Structure 18394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGATGAAAGTACTTCGAGAGGATCTGCATAGGCAGCTTCTTAGTACAGATTTTAAGAAGCAAGTCGATGGGCTTGAGATGCTGCAGATGGCACTTCCTAGAAAGGAAATTATTGAACGTTTGGATCCAAATCTCATCTGGGCACTCATCTCCCCTTTCTTCACAAAATTACAGGAGGAGGAAAAGAGATGCTTGGTTCCAAAATCGGCCGGAAATGTTGCTTCTAGGCGAGGTCTTGGCCCCTTCCAACTACCACGGGAACTTGACAAACTTGAAGGAACTTTGATGGAGCAGTTTTCTTGTACTTTTGTTGAATTCGATTATCCCCCTAATTTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

113

Amino Acids

13.15

Weight (kDa)

5.86

Isoelectric Point (pI)

60.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0495401 RchiOBHm_Chr5g0021621
rosa_laevigata	RLG00000001852
rosa_roxburghii	Rroxscaffold_1G00031930 Rroxscaffold_6G00395400 Rroxscaffold_7G00200900
rosa_samantha	Rh3BG058900 Rh3BG344300 Rh4AG091600 Rh4CG099900 Rh5AG275000 Rh6BG167100 Rh7AG008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	118
AclWI	GGATC	3 cut(s)	30, 119, 132
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	3 cut(s)	12, 46, 304
AgsI	TTSAA	3 cut(s)	116, 275, 314
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
AlwI	GGATC	3 cut(s)	30, 119, 132
AoxI	GGCC	2 cut(s)	207, 238
ApeKI	GCWGC	2 cut(s)	34, 82
ApoI	RAATTY	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	46, 69
BccI	CCATC	3 cut(s)	62, 82, 280
BfaI	CTAG	2 cut(s)	99, 225
BfmI	CTRYAG	1 cut(s)	83
BisI	GCNGC	2 cut(s)	35, 83
BlsI	GCNGC	2 cut(s)	36, 84
BmcAI	AGTACT	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	3 cut(s)	126, 198, 241
BmsI	GCATC	2 cut(s)	69, 179
BpuEI	CTTGAG	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	254
Bse8I	GATNNNNATC	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	254
BseJI	GATNNNNATC	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	145
BseX3I	CGGCCG	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	46, 69
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	209, 240
BsiEI	CGRYCG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	210
BsnI	GGCC	2 cut(s)	209, 240
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	22, 124
BspANI	GGCC	2 cut(s)	209, 240
BspHI	TCATGA	1 cut(s)	338
BspLI	GGNNCC	3 cut(s)	126, 198, 241
BspMAI	CTGCAG	1 cut(s)	87
BspPI	GGATC	3 cut(s)	30, 119, 132
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	2 cut(s)	22, 124
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	254
BstKTI	GATC	2 cut(s)	25, 127
BstMBI	GATC	2 cut(s)	22, 124
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 79
BstSFI	CTRYAG	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	145
BstV1I	GCAGC	2 cut(s)	46, 69
BstX2I	RGATCY	2 cut(s)	22, 124
BstYI	RGATCY	2 cut(s)	22, 124
BstZI	CGGCCG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	209, 240
BtgI	CCRYGG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	239
Csp6I	GTAC	3 cut(s)	11, 45, 303
CviAII	CATG	1 cut(s)	339
CviJI	RGCY	4 cut(s)	37, 73, 209, 240
CviKI_1	RGCY	4 cut(s)	37, 73, 209, 240
CviQI	GTAC	3 cut(s)	11, 45, 303
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	2 cut(s)	24, 126
DpnII	GATC	2 cut(s)	22, 124
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
EclXI	CGGCCG	1 cut(s)	207
Eco52I	CGGCCG	1 cut(s)	207
EcoRI	GAATTC	1 cut(s)	314
FaeI	CATG	1 cut(s)	342
FaiI	YATR	2 cut(s)	30, 340
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FatI	CATG	1 cut(s)	338
Fnu4HI	GCNGC	2 cut(s)	35, 83
Fsp4HI	GCNGC	2 cut(s)	35, 83
FspBI	CTAG	2 cut(s)	99, 225
GluI	GCNGC	2 cut(s)	35, 83
HaeIII	GGCC	2 cut(s)	209, 240
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	1 cut(s)	342
HpaII	CCGG	1 cut(s)	210
Hpy188III	TCNNGA	2 cut(s)	17, 339
HpyAV	CCTTC	2 cut(s)	253, 269
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	28, 85
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 79
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	22, 124
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	3 cut(s)	124, 158, 223
Lsp1109I	GCAGC	2 cut(s)	46, 69
LweI	GCATC	2 cut(s)	69, 179
MaeI	CTAG	2 cut(s)	99, 225
MaeII	ACGT	1 cut(s)	118
MalI	GATC	2 cut(s)	24, 126
MboI	GATC	2 cut(s)	22, 124
MboII	GAAGA	1 cut(s)	151
MflI	RGATCY	2 cut(s)	22, 124
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	4 cut(s)	108, 167, 314, 331
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	4 cut(s)	13, 169, 172, 224
MseI	TTAA	1 cut(s)	54
MspI	CCGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	34, 79
NdeII	GATC	2 cut(s)	22, 124
NlaIII	CATG	1 cut(s)	342
NlaIV	GGNNCC	3 cut(s)	126, 198, 241
PagI	TCATGA	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	36, 84
Psp1406I	AACGTT	1 cut(s)	118
PspN4I	GGNNCC	3 cut(s)	126, 198, 241
PspPI	GGNCC	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	87
PsuI	RGATCY	2 cut(s)	22, 124
RsaI	GTAC	3 cut(s)	12, 46, 304
RsaNI	GTAC	3 cut(s)	11, 45, 303
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	35, 83
Sau3AI	GATC	2 cut(s)	22, 124
Sau96I	GGNCC	1 cut(s)	239
ScaI	AGTACT	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	3 cut(s)	39, 121, 235
SfaNI	GCATC	2 cut(s)	69, 179
SfcI	CTRYAG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	4 cut(s)	108, 167, 314, 331
SspMI	CTAG	2 cut(s)	99, 225
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	3 cut(s)	16, 66, 318
TasI	AATT	4 cut(s)	108, 167, 314, 331
TatI	WGTACW	3 cut(s)	10, 44, 302
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseI	GCWGC	2 cut(s)	34, 82
TspDTI	ATGAA	1 cut(s)	20
XapI	RAATTY	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
XspI	CTAG	2 cut(s)	99, 225
ZrmI	AGTACT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.