Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017433

Physical Location & Seq

Genomic Coordinates Reverse (-)

18312010 .. 18324997

Gene Structure 12988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG099900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGGTGTTGTATTCAGGTTCATTCATGTGTTGCTACTGGGGGAAAAGTGCTAATCCCTTCATTTGCTTTGGGTAGAGCTCAGCTCCGCCCTAGCCCACCGAGCCCAATCGACCTGATCCGACCTGCTTTTCGAGATCGAGATAAACCCCTCCGTTCTCGAGACCCGATCCCTGGTGGCCAGTATGGAGAACCACGCGTCGAGCCCAACACGGCGTTATTTAATCTCGTCCTCAAGGCTATGCATGGTGGCAAAGAGTCCGAAGTCGCTAATGTTGAGTACAAACAGATTCAAGATCTTGAGAATGATATGATGAAGTACTTCAGAGAGGATCTGCATAGGCAGCTTCTTAGTACATATTTTAAGAAGCAAGTCGATGGGCTTGAGATGCTGCAGAAGGCACTTCCTAGAAAGGAAATTATTGTAGTTTTGGATATACTGCCTAGGTGGTTTGTTTTACAATTTTGCAAATCGAACACAACATCTCTGTTAAAGGTGTTGGAATTTCTTTATGACCTTTTTGACATGTTTACGGATGAGAAGTGTCACCATTTCTACACATATCAAGATATGATGCAATATGTAGAATATGCTCATAAAAACCAGCTTTCGATCTACTCACCAGATTTTCAGACCATGAAAATCAGAAAGAAAGCTAATTGGTCCCCCAAGGAGAAATCACTTTCTAGGGGAGAGTTCAAAGACACTGCCCTCTTATCGGGGCTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT

Protein Analysis

243

Amino Acids

28.16

Weight (kDa)

8.84

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0495401 RchiOBHm_Chr5g0021621
rosa_laevigata	RLG00000001852
rosa_roxburghii	Rroxscaffold_1G00031930 Rroxscaffold_6G00395400 Rroxscaffold_7G00200900
rosa_samantha	Rh3BG058900 Rh3BG344300 Rh4AG091600 Rh4CG099900 Rh5AG275000 Rh6BG167100 Rh7AG008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	133
AccII	CGCG	1 cut(s)	198
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	3 cut(s)	112, 163, 339
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	307
AfaI	GTAC	3 cut(s)	281, 320, 355
AfiI	CCNNNNNNNGG	2 cut(s)	173, 718
AflIII	ACRYGT	2 cut(s)	196, 525
AgsI	TTSAA	2 cut(s)	293, 700
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	5 cut(s)	80, 85, 346, 607, 656
AluI	AGCT	5 cut(s)	80, 85, 346, 607, 656
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	3 cut(s)	112, 163, 339
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	2 cut(s)	343, 391
ApoI	RAATTY	1 cut(s)	503
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
Asp700I	GAANNNNTTC	1 cut(s)	320
AspA2I	CCTAGG	1 cut(s)	443
AspS9I	GGNCC	1 cut(s)	663
AsuHPI	GGTGA	2 cut(s)	539, 612
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	663
AvrII	CCTAGG	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	180
BanII	GRGCYC	3 cut(s)	82, 107, 207
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	355, 378
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	228
BciT130I	CCWGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	5 cut(s)	93, 408, 444, 687, 730
BfmI	CTRYAG	1 cut(s)	392
BfuAI	ACCTGC	1 cut(s)	133
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	2 cut(s)	344, 392
BlnI	CCTAGG	1 cut(s)	443
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	2 cut(s)	345, 393
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	663
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	663
BmiI	GGNNCC	1 cut(s)	665
BmrFI	CCNGG	1 cut(s)	174
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	2 cut(s)	378, 564
BmuI	ACTGGG	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	69, 101
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	3 cut(s)	218, 320, 404
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	172, 443, 669
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 718
Bse1I	ACTGG	2 cut(s)	43, 181
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	172, 443, 669
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	2 cut(s)	173, 718
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	43, 181
BseXI	GCAGC	2 cut(s)	355, 378
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	2 cut(s)	173, 718
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	649
BsnI	GGCC	1 cut(s)	180
Bso31I	GGTCTC	1 cut(s)	156
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	3 cut(s)	82, 107, 207
Bsp143I	GATC	6 cut(s)	117, 136, 168, 295, 331, 612
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	665
BspMAI	CTGCAG	1 cut(s)	396
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	3 cut(s)	112, 163, 339
BspTNI	GGTCTC	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	43, 181
BssECI	CCNNGG	3 cut(s)	172, 443, 669
BssMI	GATC	6 cut(s)	117, 136, 168, 295, 331, 612
BssT1I	CCWWGG	2 cut(s)	443, 669
Bst2UI	CCWGG	1 cut(s)	174
BstDEI	CTNAG	2 cut(s)	81, 350
BstF5I	GGATG	1 cut(s)	541
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	6 cut(s)	120, 139, 171, 298, 334, 615
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	6 cut(s)	117, 136, 168, 295, 331, 612
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 343, 388
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	392
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	355, 378
BstX2I	RGATCY	2 cut(s)	295, 331
BstYI	RGATCY	2 cut(s)	295, 331
BsuRI	GGCC	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	541
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	1 cut(s)	705
BveI	ACCTGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	663
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	3 cut(s)	280, 319, 354
CviAII	CATG	4 cut(s)	27, 245, 526, 637
CviQI	GTAC	3 cut(s)	280, 319, 354
DdeI	CTNAG	2 cut(s)	81, 350
DpnI	GATC	6 cut(s)	119, 138, 170, 297, 333, 614
DpnII	GATC	6 cut(s)	117, 136, 168, 295, 331, 612
EaeI	YGGCCR	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	443, 669
Eco24I	GRGCYC	3 cut(s)	82, 107, 207
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	663
Eco53kI	GAGCTC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	443, 669
EcoT22I	ATGCAT	1 cut(s)	246
EcoT38I	GRGCYC	3 cut(s)	82, 107, 207
ErhI	CCWWGG	2 cut(s)	443, 669
FaeI	CATG	4 cut(s)	30, 248, 529, 640
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	4 cut(s)	26, 244, 525, 636
Fnu4HI	GCNGC	2 cut(s)	344, 392
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	3 cut(s)	82, 107, 207
Fsp4HI	GCNGC	2 cut(s)	344, 392
FspBI	CTAG	5 cut(s)	93, 408, 444, 687, 730
GluI	GCNGC	2 cut(s)	344, 392
HaeIII	GGCC	1 cut(s)	180
HgaI	GACGC	1 cut(s)	187
Hin1II	CATG	4 cut(s)	30, 248, 529, 640
HinfI	GANTC	2 cut(s)	257, 289
HphI	GGTGA	2 cut(s)	539, 612
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	5 cut(s)	122, 262, 326, 633, 647
Hpy188III	TCNNGA	7 cut(s)	134, 140, 159, 161, 293, 299, 566
Hpy8I	GTNNAC	1 cut(s)	531
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	69, 391
HpyCH4V	TGCA	5 cut(s)	244, 337, 394, 468, 577
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 343, 388
HpyF3I	CTNAG	2 cut(s)	81, 350
Hsp92II	CATG	4 cut(s)	30, 248, 529, 640
Kzo9I	GATC	6 cut(s)	117, 136, 168, 295, 331, 612
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	9 cut(s)	2, 24, 128, 138, 159, 186, 194, 617, 636
Lsp1109I	GCAGC	2 cut(s)	355, 378
LweI	GCATC	2 cut(s)	378, 564
MaeI	CTAG	5 cut(s)	93, 408, 444, 687, 730
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	6 cut(s)	119, 138, 170, 297, 333, 614
MboI	GATC	6 cut(s)	117, 136, 168, 295, 331, 612
MflI	RGATCY	2 cut(s)	295, 331
MhlI	GDGCHC	3 cut(s)	82, 107, 207
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	4 cut(s)	417, 461, 503, 658
MluI	ACGCGT	1 cut(s)	196
MluNI	TGGCCA	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	145, 480
MnlI	CCTC	4 cut(s)	161, 242, 322, 722
Mox20I	TGGCCA	1 cut(s)	180
Mph1103I	ATGCAT	1 cut(s)	246
MroXI	GAANNNNTTC	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	3 cut(s)	222, 363, 491
MslI	CAYNNNNRTG	1 cut(s)	27
Msp20I	TGGCCA	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	3 cut(s)	102, 343, 388
NdeII	GATC	6 cut(s)	117, 136, 168, 295, 331, 612
NlaIII	CATG	4 cut(s)	30, 248, 529, 640
NlaIV	GGNNCC	1 cut(s)	665
NmuCI	GTSAC	1 cut(s)	545
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	1 cut(s)	529
PaeR7I	CTCGAG	1 cut(s)	159
PciI	ACATGT	1 cut(s)	525
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	345, 393
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PscI	ACATGT	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	665
PspPI	GGNCC	1 cut(s)	663
PstI	CTGCAG	1 cut(s)	396
PsuI	RGATCY	2 cut(s)	295, 331
RsaI	GTAC	3 cut(s)	281, 320, 355
RsaNI	GTAC	3 cut(s)	280, 319, 354
RseI	CAYNNNNRTG	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	82
SaqAI	TTAA	3 cut(s)	222, 363, 491
SatI	GCNGC	2 cut(s)	344, 392
Sau3AI	GATC	6 cut(s)	117, 136, 168, 295, 331, 612
Sau96I	GGNCC	1 cut(s)	663
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	3 cut(s)	82, 107, 207
SfaNI	GCATC	2 cut(s)	378, 564
SfcI	CTRYAG	1 cut(s)	392
Sfr274I	CTCGAG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	663
SlaI	CTCGAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	4 cut(s)	159, 233, 299, 383
SmoI	CTYRAG	4 cut(s)	159, 233, 299, 383
Sse9I	AATT	4 cut(s)	417, 461, 503, 658
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	5 cut(s)	93, 408, 444, 687, 730
SstI	GAGCTC	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	2 cut(s)	443, 669
TaqI	TCGA	8 cut(s)	111, 133, 139, 160, 201, 375, 473, 611
TasI	AATT	4 cut(s)	417, 461, 503, 658
TatI	WGTACW	3 cut(s)	279, 318, 353
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	3 cut(s)	222, 363, 491
Tru9I	TTAA	3 cut(s)	222, 363, 491
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	2 cut(s)	343, 391
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	5 cut(s)	11, 15, 51, 329, 653
TspGWI	ACGGA	2 cut(s)	143, 548
TspRI	CASTG	1 cut(s)	712
VpaK11BI	GGWCC	1 cut(s)	663
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	159
XmaJI	CCTAGG	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	5 cut(s)	93, 408, 444, 687, 730
ZrmI	AGTACT	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.