Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0017433

Physical Location & Seq

Genomic Coordinates Forward (+)

36848335 .. 36860492

Gene Structure 12158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG275000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCCTTCCACTTATAACCCTCCGAAGCCGAATGCAGTTATGCCTTATACTTTCCGAGGCCTAATGTTCGATGACATAGGTCGCATAAAAGTCCTTAAATCTCAGAAGACGGTTGGAGATCCTAGGTTGATTAAGACCTGGGGTGAGGAGGATGCCGATGCCTCAAGAGGCGTGATCACCGCTTATTTGGGGAATGGATTGGAATGTGTTGTTTTTCATTTCAATTTGGTACTGACAGTGAAGCGTGGTTGGCTGTTGCGAGAAAGAATGGGACAGTTGATGGTATTAGTCCTATTGATGGGACACAACAATATCACCGACGTAAGAATGGAACGGGTGGTTAAGAGATTTAAGTTTGAAGAGCCACGAATAGAACAGATTCAAGATCTTGAGAATTATATGATGAAGTACTTCAGAGAGGATCTGCATAGGCAGCTTCTTAGTATAGATTTTAAGAAGCAAGTCGATGGGCTTGAGATGCTGCAGATGGCACTTCCTAGAAAGGAAATTATTGAAGTTCTGGATATACTGCCTAGGTGGTTTGTTTTACAATTTTGTAAATCGAACACAACATCTCTGTTAAAGGTGCTGGAATTTCTTTATGACCTTTTTGACATGTTTAGGGATGAGGGATACATGTATAGATGCTGGAATTTTATTATCTTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT

Protein Analysis

223

Amino Acids

26.5

Weight (kDa)

8.36

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0495401 RchiOBHm_Chr5g0021621
rosa_laevigata	RLG00000001852
rosa_roxburghii	Rroxscaffold_1G00031930 Rroxscaffold_6G00395400 Rroxscaffold_7G00200900
rosa_samantha	Rh3BG058900 Rh3BG344300 Rh4AG091600 Rh4CG099900 Rh5AG275000 Rh6BG167100 Rh7AG008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	2 cut(s)	113, 429
AcsI	RAATTY	2 cut(s)	593, 652
AcuI	CTGAAG	1 cut(s)	397
AfaI	GTAC	2 cut(s)	231, 410
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflIII	ACRYGT	2 cut(s)	615, 636
AgsI	TTSAA	4 cut(s)	223, 359, 383, 515
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	436
AluI	AGCT	1 cut(s)	436
AlwI	GGATC	2 cut(s)	113, 429
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	433, 481
ApoI	RAATTY	2 cut(s)	593, 652
Asp700I	GAANNNNTTC	2 cut(s)	378, 410
AspA2I	CCTAGG	2 cut(s)	122, 533
AsuHPI	GGTGA	3 cut(s)	155, 169, 307
AvrII	CCTAGG	2 cut(s)	122, 533
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	445, 468
BccI	CCATC	4 cut(s)	274, 292, 461, 481
BciT130I	CCWGG	1 cut(s)	139
BciVI	GTATCC	1 cut(s)	626
BclI	TGATCA	1 cut(s)	174
BfaI	CTAG	3 cut(s)	123, 498, 534
BfmI	CTRYAG	1 cut(s)	482
BfuI	GTATCC	1 cut(s)	626
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	2 cut(s)	434, 482
BlnI	CCTAGG	2 cut(s)	122, 533
BlsI	GCNGC	2 cut(s)	435, 483
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	4 cut(s)	142, 148, 468, 635
BoxI	GACNNNNGTC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	113
BpuEI	CTTGAG	3 cut(s)	148, 410, 494
BsaJI	CCNNGG	4 cut(s)	55, 122, 138, 533
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	4 cut(s)	55, 122, 138, 533
BseGI	GGATG	2 cut(s)	157, 631
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	445, 468
BshFI	GGCC	1 cut(s)	60
BslFI	GGGAC	2 cut(s)	285, 315
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmFI	GGGAC	2 cut(s)	285, 315
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	60
Bsp143I	GATC	4 cut(s)	118, 174, 385, 421
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	486
BspPI	GGATC	2 cut(s)	113, 429
BspQI	GCTCTTC	1 cut(s)	354
BssECI	CCNNGG	4 cut(s)	55, 122, 138, 533
BssMI	GATC	4 cut(s)	118, 174, 385, 421
BssT1I	CCWWGG	2 cut(s)	122, 533
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	3 cut(s)	112, 238, 276
Bst6I	CTCTTC	1 cut(s)	354
BstDEI	CTNAG	2 cut(s)	102, 440
BstF5I	GGATG	2 cut(s)	157, 631
BstKTI	GATC	4 cut(s)	121, 177, 388, 424
BstMBI	GATC	4 cut(s)	118, 174, 385, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 433, 478
BstNI	CCWGG	1 cut(s)	139
BstNSI	RCATGY	2 cut(s)	619, 640
BstPAI	GACNNNNGTC	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	445, 468
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	3 cut(s)	118, 385, 421
BstYI	RGATCY	3 cut(s)	118, 385, 421
BsuI	GTATCC	1 cut(s)	626
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	157, 631
BtsIMutI	CAGTG	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	230, 409
CviAII	CATG	2 cut(s)	616, 637
CviJI	RGCY	6 cut(s)	28, 60, 253, 364, 436, 472
CviKI_1	RGCY	6 cut(s)	28, 60, 253, 364, 436, 472
CviQI	GTAC	2 cut(s)	230, 409
DdeI	CTNAG	2 cut(s)	102, 440
DpnI	GATC	4 cut(s)	120, 176, 387, 423
DpnII	GATC	4 cut(s)	118, 174, 385, 421
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	2 cut(s)	122, 533
Eco147I	AGGCCT	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	2 cut(s)	122, 533
ErhI	CCWWGG	2 cut(s)	122, 533
FaeI	CATG	2 cut(s)	619, 640
FaqI	GGGAC	2 cut(s)	285, 315
FatI	CATG	2 cut(s)	615, 636
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	434, 482
FokI	GGATG	2 cut(s)	164, 638
Fsp4HI	GCNGC	2 cut(s)	434, 482
FspBI	CTAG	3 cut(s)	123, 498, 534
GluI	GCNGC	2 cut(s)	434, 482
HaeIII	GGCC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	619, 640
HinfI	GANTC	1 cut(s)	379
HphI	GGTGA	3 cut(s)	155, 169, 307
Hpy188I	TCNGA	4 cut(s)	24, 56, 105, 416
Hpy188III	TCNNGA	4 cut(s)	165, 383, 389, 521
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	3 cut(s)	112, 238, 276
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	35, 427, 484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 433, 478
HpyF3I	CTNAG	2 cut(s)	102, 440
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	619, 640
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	118, 174, 385, 421
LguI	GCTCTTC	1 cut(s)	354
LpnPI	CCDG	5 cut(s)	124, 151, 506, 575, 634
Lsp1109I	GCAGC	2 cut(s)	445, 468
LweI	GCATC	4 cut(s)	142, 148, 468, 635
MaeI	CTAG	3 cut(s)	123, 498, 534
MaeII	ACGT	1 cut(s)	321
MalI	GATC	4 cut(s)	120, 176, 387, 423
MboI	GATC	4 cut(s)	118, 174, 385, 421
MboII	GAAGA	2 cut(s)	118, 371
MflI	RGATCY	3 cut(s)	118, 385, 421
MluCI	AATT	6 cut(s)	223, 394, 507, 551, 593, 652
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	8 cut(s)	30, 50, 139, 142, 161, 172, 412, 622
MroXI	GAANNNNTTC	2 cut(s)	378, 410
MseI	TTAA	6 cut(s)	96, 132, 342, 351, 453, 581
MspR9I	CCNGG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	3 cut(s)	250, 433, 478
NdeII	GATC	4 cut(s)	118, 174, 385, 421
NlaIII	CATG	2 cut(s)	619, 640
NspI	RCATGY	2 cut(s)	619, 640
PceI	AGGCCT	1 cut(s)	60
PciI	ACATGT	2 cut(s)	615, 636
PciSI	GCTCTTC	1 cut(s)	354
PctI	GAATGC	1 cut(s)	37
PdmI	GAANNNNTTC	2 cut(s)	378, 410
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	435, 483
PscI	ACATGT	2 cut(s)	615, 636
PshAI	GACNNNNGTC	1 cut(s)	78
PsiI	TTATAA	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	486
PsuI	RGATCY	3 cut(s)	118, 385, 421
RsaI	GTAC	2 cut(s)	231, 410
RsaNI	GTAC	2 cut(s)	230, 409
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	6 cut(s)	96, 132, 342, 351, 453, 581
SatI	GCNGC	2 cut(s)	434, 482
Sau3AI	GATC	4 cut(s)	118, 174, 385, 421
ScaI	AGTACT	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	8 cut(s)	82, 128, 140, 324, 438, 539, 588, 609
SfaNI	GCATC	4 cut(s)	142, 148, 468, 635
SfcI	CTRYAG	1 cut(s)	482
SmlI	CTYRAG	3 cut(s)	163, 389, 473
SmoI	CTYRAG	3 cut(s)	163, 389, 473
Sse9I	AATT	6 cut(s)	223, 394, 507, 551, 593, 652
SseBI	AGGCCT	1 cut(s)	60
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	3 cut(s)	123, 498, 534
StuI	AGGCCT	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	2 cut(s)	122, 533
TaaI	ACNGT	3 cut(s)	112, 238, 276
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	3 cut(s)	69, 465, 563
TasI	AATT	6 cut(s)	223, 394, 507, 551, 593, 652
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	6 cut(s)	96, 132, 342, 351, 453, 581
Tru9I	TTAA	6 cut(s)	96, 132, 342, 351, 453, 581
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	2 cut(s)	433, 481
TspDTI	ATGAA	2 cut(s)	206, 419
TspRI	CASTG	1 cut(s)	243
XapI	RAATTY	2 cut(s)	593, 652
XceI	RCATGY	2 cut(s)	619, 640
XmaJI	CCTAGG	2 cut(s)	122, 533
XmnI	GAANNNNTTC	2 cut(s)	378, 410
XspI	CTAG	3 cut(s)	123, 498, 534
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.