Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0017433

Physical Location & Seq

Genomic Coordinates Reverse (-)

4026351 .. 4028664

Gene Structure 2314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG058900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGGAGCTTCTTATCCGGTGGCTGCACCGGTCCCGATTCTTCACTGAGAGTCTCCAACTCCGCCCACCGAGCCCAATCGACCTGATCCGTCTGGCTCTTCGAGATCAAGATAAACCCCAGGTGGTTAAGAGATTTAAGTTTAAAGAGCCACGAATAGAACAGATTCAAGATCTTGAGAATTATATGATGAAGTACTTCAGAGAGGATCTGCATAGGCAGCTTCTTAGTACAGATTTTAAGAAGCAAGTCGATGGGCTTGAGATGCTGCAGAAGGCACTTCCTAGAAAGGAAATTATTGAAGTTCTGGATATATTGCCTAGATGGTTTGTTTTACAATTTTGTAAATCGAACACAACATCTCTGTTAAAGGTGCTGGAATTTCTTTATGACATTTTTGACATATTTAGGGATGAGGGATACATGATCGATTTTCAGACCAAGGAGAAGTCACTTTCTGGGGGAGAGTTCAAAAACACTGCCCTCTTATCGGGGGGACGAGGCTTCTCTAGTGCAAAGTTGGAAGATCTCAAGACTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT

Protein Analysis

180

Amino Acids

21.5

Weight (kDa)

8.59

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0495401 RchiOBHm_Chr5g0021621
rosa_laevigata	RLG00000001852
rosa_roxburghii	Rroxscaffold_1G00031930 Rroxscaffold_6G00395400 Rroxscaffold_7G00200900
rosa_samantha	Rh3BG058900 Rh3BG344300 Rh4AG091600 Rh4CG099900 Rh5AG275000 Rh6BG167100 Rh7AG008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	82, 216
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	184
AfaI	GTAC	2 cut(s)	197, 232
AfiI	CCNNNNNNNGG	1 cut(s)	490
AgeI	ACCGGT	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	170, 302, 472
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	2 cut(s)	10, 223
AluI	AGCT	2 cut(s)	10, 223
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	2 cut(s)	82, 216
ApeKI	GCWGC	3 cut(s)	25, 220, 268
ApoI	RAATTY	1 cut(s)	380
AsiGI	ACCGGT	1 cut(s)	30
Asp700I	GAANNNNTTC	2 cut(s)	165, 197
AspS9I	GGNCC	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	77
BbvI	GCAGC	3 cut(s)	12, 232, 255
BccI	CCATC	2 cut(s)	248, 318
BciT130I	CCWGG	1 cut(s)	122
BciVI	GTATCC	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	3 cut(s)	285, 321, 510
BfmI	CTRYAG	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	413
BglII	AGATCT	2 cut(s)	172, 526
BisI	GCNGC	3 cut(s)	26, 221, 269
BlsI	GCNGC	3 cut(s)	27, 222, 270
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	255
BpuEI	CTTGAG	3 cut(s)	197, 281, 515
Bsa29I	ATCGAT	1 cut(s)	429
BsaJI	CCNNGG	2 cut(s)	120, 441
BsaWI	WCCGGW	2 cut(s)	18, 30
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse118I	RCCGGY	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	122
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	120, 441
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	12, 232, 255
BsgI	GTGCAG	1 cut(s)	11
BshTI	ACCGGT	1 cut(s)	30
BshVI	ATCGAT	1 cut(s)	429
BsiSI	CCGG	2 cut(s)	19, 31
BslFI	GGGAC	2 cut(s)	19, 510
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	19, 510
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	6 cut(s)	87, 106, 172, 208, 426, 526
BspACI	CCGC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	273
BspPI	GGATC	2 cut(s)	82, 216
BspQI	GCTCTTC	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	120, 441
BssMI	GATC	6 cut(s)	87, 106, 172, 208, 426, 526
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	48, 227
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	6 cut(s)	90, 109, 175, 211, 429, 529
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	6 cut(s)	87, 106, 172, 208, 426, 526
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 220, 265
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	269
BstV1I	GCAGC	3 cut(s)	12, 232, 255
BstX2I	RGATCY	3 cut(s)	172, 208, 526
BstYI	RGATCY	3 cut(s)	172, 208, 526
Bsu15I	ATCGAT	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	413
BsuTUI	ATCGAT	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	2 cut(s)	45, 477
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	33
ClaI	ATCGAT	1 cut(s)	429
Csp6I	GTAC	2 cut(s)	196, 231
CspAI	ACCGGT	1 cut(s)	30
CviAII	CATG	1 cut(s)	424
CviJI	RGCY	8 cut(s)	10, 25, 75, 98, 151, 223, 259, 504
CviKI_1	RGCY	8 cut(s)	10, 25, 75, 98, 151, 223, 259, 504
CviQI	GTAC	2 cut(s)	196, 231
DdeI	CTNAG	2 cut(s)	48, 227
DpnI	GATC	6 cut(s)	89, 108, 174, 210, 428, 528
DpnII	GATC	6 cut(s)	87, 106, 172, 208, 426, 526
DraI	TTTAAA	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	1 cut(s)	427
FaiI	YATR	7 cut(s)	186, 188, 216, 314, 390, 404, 425
FaqI	GGGAC	2 cut(s)	19, 510
FatI	CATG	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	26, 221, 269
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	3 cut(s)	26, 221, 269
FspBI	CTAG	3 cut(s)	285, 321, 510
GluI	GCNGC	3 cut(s)	26, 221, 269
HapII	CCGG	2 cut(s)	19, 31
Hin1II	CATG	1 cut(s)	427
HinfI	GANTC	3 cut(s)	39, 52, 166
HpaII	CCGG	2 cut(s)	19, 31
Hpy188I	TCNGA	2 cut(s)	203, 438
Hpy188III	TCNNGA	7 cut(s)	36, 104, 110, 170, 176, 308, 532
HpyAV	CCTTC	1 cut(s)	268
HpyCH4V	TGCA	4 cut(s)	28, 214, 271, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 220, 265
HpyF3I	CTNAG	2 cut(s)	48, 227
Hsp92II	CATG	1 cut(s)	427
Kzo9I	GATC	6 cut(s)	87, 106, 172, 208, 426, 526
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	9 cut(s)	32, 44, 80, 98, 107, 134, 293, 362, 444
Lsp1109I	GCAGC	3 cut(s)	12, 232, 255
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	3 cut(s)	285, 321, 510
MaeIII	GTNAC	1 cut(s)	450
MalI	GATC	6 cut(s)	89, 108, 174, 210, 428, 528
MboI	GATC	6 cut(s)	87, 106, 172, 208, 426, 526
MboII	GAAGA	3 cut(s)	34, 92, 536
MflI	RGATCY	3 cut(s)	172, 208, 526
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	4 cut(s)	181, 294, 338, 380
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	82, 501
MnlI	CCTC	4 cut(s)	199, 409, 494, 494
MroXI	GAANNNNTTC	2 cut(s)	165, 197
MseI	TTAA	5 cut(s)	129, 138, 144, 240, 368
MspI	CCGG	2 cut(s)	19, 31
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	3 cut(s)	72, 220, 265
NdeII	GATC	6 cut(s)	87, 106, 172, 208, 426, 526
NlaIII	CATG	1 cut(s)	427
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	105
PdmI	GAANNNNTTC	2 cut(s)	165, 197
PfeI	GAWTC	2 cut(s)	39, 166
PinAI	ACCGGT	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	27, 222, 270
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	273
PsuI	RGATCY	3 cut(s)	172, 208, 526
RsaI	GTAC	2 cut(s)	197, 232
RsaNI	GTAC	2 cut(s)	196, 231
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	5 cut(s)	129, 138, 144, 240, 368
SatI	GCNGC	3 cut(s)	26, 221, 269
Sau3AI	GATC	6 cut(s)	87, 106, 172, 208, 426, 526
Sau96I	GGNCC	1 cut(s)	33
ScaI	AGTACT	1 cut(s)	197
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	5 cut(s)	12, 87, 126, 225, 375
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	33
SmlI	CTYRAG	3 cut(s)	176, 260, 530
SmoI	CTYRAG	3 cut(s)	176, 260, 530
Sse9I	AATT	4 cut(s)	181, 294, 338, 380
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	3 cut(s)	285, 321, 510
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	441
TaqI	TCGA	5 cut(s)	81, 103, 252, 350, 429
TasI	AATT	4 cut(s)	181, 294, 338, 380
TatI	WGTACW	2 cut(s)	195, 230
TfiI	GAWTC	2 cut(s)	39, 166
Tru1I	TTAA	5 cut(s)	129, 138, 144, 240, 368
Tru9I	TTAA	5 cut(s)	129, 138, 144, 240, 368
TscAI	CASTG	2 cut(s)	52, 484
TseFI	GTSAC	1 cut(s)	450
TseI	GCWGC	3 cut(s)	25, 220, 268
Tsp45I	GTSAC	1 cut(s)	450
TspDTI	ATGAA	1 cut(s)	206
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	2 cut(s)	52, 484
VpaK11BI	GGWCC	1 cut(s)	33
XapI	RAATTY	1 cut(s)	380
XmnI	GAANNNNTTC	2 cut(s)	165, 197
XspI	CTAG	3 cut(s)	285, 321, 510
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.