Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0017433

Physical Location & Seq

Genomic Coordinates Reverse (-)

37445048 .. 37447093

Gene Structure 2046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG344300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAGGAGCTTCTTATCCAGTGGCTGCACCGGGCCCGATTCTTCACTGAGAGTCTCCAACTGAGCCCACCGAGCCCAATCGACCTGATCCGACCGGCTTTTCGAGATCGTGATAAACCCCTCCGTTCTCGAGACCCGATCCCTGGTGGCCAGTATGGAGAACCACGCGTCGAGTCCAACACGGCGTTATTTAATCTCTTCCTCAAGGCTATGCACGGTGGCAAAGAGTCCAAAGTCGCTAATATTCAAGATCTTGAGAATGATATGATGAAGTACTTCAGAGAGGATCTGTATAGGCAGCTTCTTAGTACATATTTTAAGAAGCAAGTCGATGGGCTTGAGATGCTGCAGAAGTGTTTCACAGTGCTCCTGGTGTCCCAGAAGTGTCACCATTTCTACACATATAAAGATATGATGCAATATGTAGAATATGCTCAGAAAAACCAGCTTTCGATCTACTCACCAGATTTTCAGACCATGAAAATCAGAAAGAAAGCTAATTGGTCCCCCAAGGAGAAGTCACTTTCTAGGGGAGAGTTCAAAGACACTGCCCTATTATCGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT

Protein Analysis

188

Amino Acids

22.17

Weight (kDa)

9.22

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0495401 RchiOBHm_Chr5g0021621
rosa_laevigata	RLG00000001852
rosa_roxburghii	Rroxscaffold_1G00031930 Rroxscaffold_6G00395400 Rroxscaffold_7G00200900
rosa_samantha	Rh3BG058900 Rh3BG344300 Rh4AG091600 Rh4CG099900 Rh5AG275000 Rh6BG167100 Rh7AG008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	168
AclWI	GGATC	3 cut(s)	82, 133, 294
AcoI	YGGCCR	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	262
AfaI	GTAC	2 cut(s)	275, 310
AfiI	CCNNNNNNNGG	2 cut(s)	143, 559
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	248, 541
AjnI	CCWGG	2 cut(s)	142, 369
AluBI	AGCT	4 cut(s)	10, 301, 448, 497
AluI	AGCT	4 cut(s)	10, 301, 448, 497
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	2 cut(s)	59, 126
AlwI	GGATC	3 cut(s)	82, 133, 294
AlwNI	CAGNNNCTG	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	2 cut(s)	33, 148
ApaI	GGGCCC	1 cut(s)	37
ApeKI	GCWGC	3 cut(s)	25, 298, 346
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
Asp700I	GAANNNNTTC	2 cut(s)	275, 356
AspS9I	GGNCC	3 cut(s)	33, 34, 504
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	380, 453
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	504
BaeGI	GKGCMC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	150
BanII	GRGCYC	3 cut(s)	37, 68, 77
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	12, 310, 333
BccI	CCATC	1 cut(s)	326
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	2 cut(s)	144, 371
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	2 cut(s)	59, 126
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	347
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	3 cut(s)	26, 299, 347
BlsI	GCNGC	3 cut(s)	27, 300, 348
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	3 cut(s)	32, 144, 371
Bme18I	GGWCC	1 cut(s)	504
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	3 cut(s)	33, 34, 504
BmiI	GGNNCC	2 cut(s)	35, 506
BmrFI	CCNGG	3 cut(s)	32, 144, 371
BmsI	GCATC	2 cut(s)	333, 405
BpuEI	CTTGAG	3 cut(s)	188, 275, 359
BpuMI	CCSGG	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	142, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 559
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	19, 151
BseBI	CCWGG	2 cut(s)	144, 371
BseDI	CCNNGG	2 cut(s)	142, 510
BseLI	CCNNNNNNNGG	2 cut(s)	143, 559
BseMII	CTCAG	3 cut(s)	39, 53, 449
BseNI	ACTGG	2 cut(s)	19, 151
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	3 cut(s)	12, 310, 333
BsgI	GTGCAG	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	35, 150
BsiEI	CGRYCG	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	2 cut(s)	31, 95
BslFI	GGGAC	2 cut(s)	361, 490
BslI	CCNNNNNNNGG	2 cut(s)	143, 559
BsmAI	GTCTC	2 cut(s)	59, 126
BsmFI	GGGAC	2 cut(s)	361, 490
BsnI	GGCC	2 cut(s)	35, 150
Bso31I	GGTCTC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	129
Bsp120I	GGGCCC	1 cut(s)	33
Bsp1286I	GDGCHC	4 cut(s)	37, 68, 77, 369
Bsp143I	GATC	6 cut(s)	87, 106, 138, 250, 286, 453
BspANI	GGCC	2 cut(s)	35, 150
BspCNI	CTCAG	3 cut(s)	40, 54, 448
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	35, 506
BspMAI	CTGCAG	1 cut(s)	351
BspPI	GGATC	3 cut(s)	82, 133, 294
BspTNI	GGTCTC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	19, 151
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	142, 510
BssMI	GATC	6 cut(s)	87, 106, 138, 250, 286, 453
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	2 cut(s)	144, 371
Bst4CI	ACNGT	2 cut(s)	218, 364
Bst6I	CTCTTC	1 cut(s)	203
BstDEI	CTNAG	4 cut(s)	48, 62, 305, 435
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	6 cut(s)	90, 109, 141, 253, 289, 456
BstMAI	GTCTC	2 cut(s)	59, 126
BstMBI	GATC	6 cut(s)	87, 106, 138, 250, 286, 453
BstMCI	CGRYCG	1 cut(s)	95
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 343
BstNI	CCWGG	2 cut(s)	144, 371
BstSCI	CCNGG	3 cut(s)	30, 142, 369
BstSFI	CTRYAG	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	37
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	12, 310, 333
BstX2I	RGATCY	2 cut(s)	250, 286
BstYI	RGATCY	2 cut(s)	250, 286
BsuRI	GGCC	2 cut(s)	35, 150
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	4 cut(s)	26, 45, 369, 546
CaiI	CAGNNNCTG	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	33, 34, 504
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	274, 309
CviAII	CATG	1 cut(s)	478
CviQI	GTAC	2 cut(s)	274, 309
DdeI	CTNAG	4 cut(s)	48, 62, 305, 435
DpnI	GATC	6 cut(s)	89, 108, 140, 252, 288, 455
DpnII	GATC	6 cut(s)	87, 106, 138, 250, 286, 453
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	510
Eco24I	GRGCYC	3 cut(s)	37, 68, 77
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	504
Eco57I	CTGAAG	1 cut(s)	262
Eco88I	CYCGRG	1 cut(s)	129
EcoRII	CCWGG	2 cut(s)	142, 369
EcoT14I	CCWWGG	1 cut(s)	510
EcoT38I	GRGCYC	3 cut(s)	37, 68, 77
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	1 cut(s)	481
FaqI	GGGAC	2 cut(s)	361, 490
FatI	CATG	1 cut(s)	477
Fnu4HI	GCNGC	3 cut(s)	26, 299, 347
FriOI	GRGCYC	3 cut(s)	37, 68, 77
Fsp4HI	GCNGC	3 cut(s)	26, 299, 347
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	3 cut(s)	26, 299, 347
HaeIII	GGCC	2 cut(s)	35, 150
HapII	CCGG	2 cut(s)	31, 95
HgaI	GACGC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	481
HinfI	GANTC	4 cut(s)	39, 52, 173, 227
HpaII	CCGG	2 cut(s)	31, 95
HphI	GGTGA	2 cut(s)	380, 453
Hpy188I	TCNGA	5 cut(s)	92, 281, 438, 474, 488
Hpy188III	TCNNGA	6 cut(s)	104, 110, 129, 131, 248, 254
Hpy99I	CGWCG	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	218, 364
HpyCH4V	TGCA	4 cut(s)	28, 214, 349, 418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 343
HpyF3I	CTNAG	4 cut(s)	48, 62, 305, 435
Hsp92II	CATG	1 cut(s)	481
Kzo9I	GATC	6 cut(s)	87, 106, 138, 250, 286, 453
LmnI	GCTCC	2 cut(s)	7, 372
Lsp1109I	GCAGC	3 cut(s)	12, 310, 333
LweI	GCATC	2 cut(s)	333, 405
MaeI	CTAG	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	386, 519
MalI	GATC	6 cut(s)	89, 108, 140, 252, 288, 455
MboI	GATC	6 cut(s)	87, 106, 138, 250, 286, 453
MboII	GAAGA	2 cut(s)	34, 190
MflI	RGATCY	2 cut(s)	250, 286
MhlI	GDGCHC	4 cut(s)	37, 68, 77, 369
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	1 cut(s)	499
MluI	ACGCGT	1 cut(s)	166
MluNI	TGGCCA	1 cut(s)	150
MlyI	GAGTC	3 cut(s)	61, 182, 236
MmeI	TCCRAC	3 cut(s)	82, 115, 201
MnlI	CCTC	3 cut(s)	131, 212, 277
Mox20I	TGGCCA	1 cut(s)	150
MroXI	GAANNNNTTC	2 cut(s)	275, 356
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	2 cut(s)	192, 318
Msp20I	TGGCCA	1 cut(s)	150
MspI	CCGG	2 cut(s)	31, 95
MspR9I	CCNGG	3 cut(s)	32, 144, 371
MvaI	CCWGG	2 cut(s)	144, 371
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	72, 343
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	6 cut(s)	87, 106, 138, 250, 286, 453
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	2 cut(s)	35, 506
NmuCI	GTSAC	2 cut(s)	386, 519
PaeR7I	CTCGAG	1 cut(s)	129
PdmI	GAANNNNTTC	2 cut(s)	275, 356
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	27, 300, 348
PleI	GAGTC	3 cut(s)	60, 181, 235
PpsI	GAGTC	3 cut(s)	60, 181, 235
Psp6I	CCWGG	2 cut(s)	142, 369
PspGI	CCWGG	2 cut(s)	142, 369
PspN4I	GGNNCC	2 cut(s)	35, 506
PspOMI	GGGCCC	1 cut(s)	33
PspPI	GGNCC	3 cut(s)	33, 34, 504
PstI	CTGCAG	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	250, 286
RsaI	GTAC	2 cut(s)	275, 310
RsaNI	GTAC	2 cut(s)	274, 309
SaqAI	TTAA	2 cut(s)	192, 318
SatI	GCNGC	3 cut(s)	26, 299, 347
Sau3AI	GATC	6 cut(s)	87, 106, 138, 250, 286, 453
Sau96I	GGNCC	3 cut(s)	33, 34, 504
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	3 cut(s)	61, 182, 236
ScrFI	CCNGG	3 cut(s)	32, 144, 371
SduI	GDGCHC	4 cut(s)	37, 68, 77, 369
SetI	ASST	5 cut(s)	12, 87, 303, 450, 499
SfaNI	GCATC	2 cut(s)	333, 405
SfcI	CTRYAG	1 cut(s)	347
Sfr274I	CTCGAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	504
SlaI	CTCGAG	1 cut(s)	129
SmlI	CTYRAG	4 cut(s)	129, 203, 254, 338
SmoI	CTYRAG	4 cut(s)	129, 203, 254, 338
Sse9I	AATT	1 cut(s)	499
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	3 cut(s)	30, 142, 369
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	218, 364
TaqI	TCGA	6 cut(s)	81, 103, 130, 171, 330, 452
TasI	AATT	1 cut(s)	499
TatI	WGTACW	2 cut(s)	273, 308
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	2 cut(s)	192, 318
Tru9I	TTAA	2 cut(s)	192, 318
TscAI	CASTG	4 cut(s)	26, 52, 369, 553
TseFI	GTSAC	2 cut(s)	386, 519
TseI	GCWGC	3 cut(s)	25, 298, 346
Tsp45I	GTSAC	2 cut(s)	386, 519
TspDTI	ATGAA	2 cut(s)	284, 494
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	4 cut(s)	26, 52, 369, 553
VpaK11BI	GGWCC	1 cut(s)	504
XhoI	CTCGAG	1 cut(s)	129
XmnI	GAANNNNTTC	2 cut(s)	275, 356
XspI	CTAG	1 cut(s)	528
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.