Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017433

Physical Location & Seq

Genomic Coordinates Forward (+)

27070233 .. 27072187

Gene Structure 1955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG167100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGATGAAGTACTTCAGAGAGGATCTGCATAGGCAGCTTCTTAGTACAGATTTTAAGAAGCAAGTTGATGGGCTTGAGATGCTGCAAATGGCACTTCCTAGAAAGGAAATTATTGAAGTTCTGGATATACTGCCTAGGTGGTTTGTTTTACAATTTTGTAAATCGAACACAACATCTCTATTAAAGGTGCTGGAATTTCTTTATGACCTTTTTGACATGTTTAGGGATGAGGGATACATATCATCTGTACAGAGCTCGCTATGGTTGAACCTTTACATGAATGACATAGGGGACGAGGCTTCTCTAGTGCAAAGTTGGAAGATCTCAAGACTTTTTAGACAATATGAAAACAATGTGAACTATCCCAATGATTTCTTCAATCTTGCAGCGTACCCAATTAGCACCTTTTTGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT

Protein Analysis

138

Amino Acids

16.6

Weight (kDa)

4.95

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0495401 RchiOBHm_Chr5g0021621
rosa_laevigata	RLG00000001852
rosa_roxburghii	Rroxscaffold_1G00031930 Rroxscaffold_6G00395400 Rroxscaffold_7G00200900
rosa_samantha	Rh3BG058900 Rh3BG344300 Rh4AG091600 Rh4CG099900 Rh5AG275000 Rh6BG167100 Rh7AG008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	4 cut(s)	11, 46, 249, 392
AfiI	CCNNNNNNNGG	1 cut(s)	411
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	3 cut(s)	116, 268, 379
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	2 cut(s)	37, 255
AluI	AGCT	2 cut(s)	37, 255
Alw21I	GWGCWC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	30
ApeKI	GCWGC	3 cut(s)	34, 82, 386
ApoI	RAATTY	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	11
AspA2I	CCTAGG	1 cut(s)	134
AvrII	CCTAGG	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	3 cut(s)	46, 69, 398
BccI	CCATC	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	227
BfaI	CTAG	3 cut(s)	99, 135, 305
BfuI	GTATCC	1 cut(s)	227
BglII	AGATCT	1 cut(s)	321
BisI	GCNGC	3 cut(s)	35, 83, 387
BlnI	CCTAGG	1 cut(s)	134
BlsI	GCNGC	3 cut(s)	36, 84, 388
BmcAI	AGTACT	1 cut(s)	11
BmsI	GCATC	1 cut(s)	69
BpuEI	CTTGAG	2 cut(s)	95, 310
BsaBI	GATNNNNATC	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseXI	GCAGC	3 cut(s)	46, 69, 398
BsiHKAI	GWGCWC	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp1407I	TGTACA	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	22, 321
BspPI	GGATC	1 cut(s)	30
BsrGI	TGTACA	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	2 cut(s)	22, 321
BssT1I	CCWWGG	1 cut(s)	134
BstAUI	TGTACA	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	2 cut(s)	25, 324
BstMBI	GATC	2 cut(s)	22, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 79
BstNSI	RCATGY	1 cut(s)	220
BstV1I	GCAGC	3 cut(s)	46, 69, 398
BstX2I	RGATCY	2 cut(s)	22, 321
BstYI	RGATCY	2 cut(s)	22, 321
BsuI	GTATCC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	257
Csp6I	GTAC	4 cut(s)	10, 45, 248, 391
CviAII	CATG	2 cut(s)	217, 277
CviJI	RGCY	4 cut(s)	37, 73, 255, 299
CviKI_1	RGCY	4 cut(s)	37, 73, 255, 299
CviQI	GTAC	4 cut(s)	10, 45, 248, 391
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	2 cut(s)	24, 323
DpnII	GATC	2 cut(s)	22, 321
Ecl136II	GAGCTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	2 cut(s)	220, 280
FaiI	YATR	9 cut(s)	30, 128, 204, 218, 239, 262, 278, 287, 345
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	2 cut(s)	216, 276
Fnu4HI	GCNGC	3 cut(s)	35, 83, 387
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	35, 83, 387
FspBI	CTAG	3 cut(s)	99, 135, 305
GluI	GCNGC	3 cut(s)	35, 83, 387
Hin1II	CATG	2 cut(s)	220, 280
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	2 cut(s)	122, 327
Hpy8I	GTNNAC	1 cut(s)	358
HpyCH4V	TGCA	4 cut(s)	28, 85, 310, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 79
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	220, 280
Kzo9I	GATC	2 cut(s)	22, 321
LpnPI	CCDG	2 cut(s)	107, 176
Lsp1109I	GCAGC	3 cut(s)	46, 69, 398
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	3 cut(s)	99, 135, 305
MalI	GATC	2 cut(s)	24, 323
MboI	GATC	2 cut(s)	22, 321
MboII	GAAGA	2 cut(s)	331, 367
MflI	RGATCY	2 cut(s)	22, 321
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	4 cut(s)	108, 152, 194, 396
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	3 cut(s)	13, 223, 289
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	2 cut(s)	54, 182
MwoI	GCNNNNNNNGC	2 cut(s)	34, 79
NdeII	GATC	2 cut(s)	22, 321
NlaIII	CATG	2 cut(s)	220, 280
NspI	RCATGY	1 cut(s)	220
PciI	ACATGT	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	11
PkrI	GCNGC	3 cut(s)	36, 84, 388
PscI	ACATGT	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	22, 321
RsaI	GTAC	4 cut(s)	11, 46, 249, 392
RsaNI	GTAC	4 cut(s)	10, 45, 248, 391
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	54, 182
SatI	GCNGC	3 cut(s)	35, 83, 387
Sau3AI	GATC	2 cut(s)	22, 321
ScaI	AGTACT	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	7 cut(s)	39, 140, 189, 210, 257, 273, 407
SfaNI	GCATC	1 cut(s)	69
SmlI	CTYRAG	2 cut(s)	74, 325
SmoI	CTYRAG	2 cut(s)	74, 325
Sse9I	AATT	4 cut(s)	108, 152, 194, 396
SspMI	CTAG	3 cut(s)	99, 135, 305
SstI	GAGCTC	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	134
TaqI	TCGA	1 cut(s)	164
TasI	AATT	4 cut(s)	108, 152, 194, 396
TatI	WGTACW	3 cut(s)	9, 44, 247
Tru1I	TTAA	2 cut(s)	54, 182
Tru9I	TTAA	2 cut(s)	54, 182
TseI	GCWGC	3 cut(s)	34, 82, 386
TspDTI	ATGAA	3 cut(s)	20, 293, 360
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	1 cut(s)	220
XmaJI	CCTAGG	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	3 cut(s)	99, 135, 305
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.