Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017440

Physical Location & Seq

Genomic Coordinates Forward (+)

19010071 .. 19012117

Gene Structure 2047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30467

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGAAATTAGGGGTGAACCATAAGACTGGCAAAATTTGGTCAATTACATCATGGAAAACTCACACCAACCCAGAGATGGGAATTTTCAACCTTGATTGGGACCCAAATGGACACCAATTGGAGCTTAGAAGACGTGGGGTGGTTTATTGGAGAAGTGGAAAATTTACAAGCAATAGTTTTGAGTTCATTTTGCCTTATCAAAGGCAGAGGTACAACTTCAGCATGGTTTCAAATGAGTATGAAGACTACCTCACTTACGCTGCTCTAGAGGATCAAACTAATGAACCAGAATGGATCCTAAGATTTCAGGGGAGACTTTATGATAATGATGACCAAGTCGGTATTGTAGAAGCAGACATGTGTGGTGCGTATAACACTGAGGGAGGGTGCCAGAGAAGGGACCGGACACCAGACTGTACAACAGGGTTTGAGTTTAGCAATAATTTTGAGGAAAAAAATGGTTCCTTCAAACCAAGTACTTCCTCCTTGTCTAGTTCAAGATGCCCGTACTGGCTTAATTTTGCTTCAGATAAAAATTACAGCAGTAGTAGTACAGATTGTCAGGCTACATGTTGGCAAGATTGTGATTGCATTGGATATGACTTTCTATTTGATAATCAGACTGGATGCCGATTTTGGAGTGTAGATTGTCCCTTCTCTGAAGACCTTACTGGTTCGGCTACTACAACTGGTTTTGTAGTTATGACAAGACCACCAATGATAAGAACATCATCATCATCTCGCAAAAAGGGTAAGAACAGGACGAAGATTTTTCAGAAAGAACTACTTAGCTTCATGAGATCTAATAGACCAACTGCTGTGGATGGACTTCAAATTGACGGAAAGATGGGGCAGGATTTAAGTGTATTTAGCTATGCATCTGTATTGGCTGCCACATGCAACTTCTCTGAAGAAAACAAACTGGGACAGGAGGGCTTTGGACCGGTTTACAAGCTTTCAAAATCTTCAGGGCAAGGCGTGTCAGAGTTCAAGAATGAATTAATCCTCATATATCATGAACTTCAACACACAAACCTTGTTCAGCTTTTCGGATTTTGCCTTCATGGTGAAGAGAGGATGTTGATATATGAGTACATGCCAAACAAAAGTTTGGACTACTTCTTATTTGATTCAACAAGAGGCATGTTACTTGACCGGAAGAAGCGTTTTAATATAATTGAAGGAGTTGCTCAAGGATTAATTTACTTGCACAAATACTCAAGATTGAGGGTGATTCATAGAGATTTAAAAGCTAGTAATGTCCTACTTGATGACAATATGAATCCAAAAATTTCCAACTTTGGTCCGGCAAAAATCTTCACGCATAATGAAATGGAAGCAAATTCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

450

Amino Acids

51.67

Weight (kDa)

6.34

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	323 - 444	7.3e-21	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	329 - 444	3e-20	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024981 RchiOBHm_Chr5g0025191 RchiOBHm_Chr5g0025411
rosa_multiflora	Rmu_sc0003576.1_g000019 Rmu_sc0006827.1_g000018
rosa_roxburghii	Rroxscaffold_1G00054470
rosa_rugosa	Rorug05G0085000.1
rosa_samantha	Rh5AG177100 Rh5BG175100 Rh5BG175200 Rh5CG192700 Rh5CG194500
rosa_wichuraiana	Rw5G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	387
AclWI	GGATC	3 cut(s)	279, 289, 302
AcsI	RAATTY	5 cut(s)	33, 81, 161, 1290, 1342
AcuI	CTGAAG	5 cut(s)	202, 510, 681, 930, 951
AfaI	GTAC	6 cut(s)	212, 418, 478, 509, 553, 1094
AfiI	CCNNNNNNNGG	4 cut(s)	76, 77, 97, 397
AflIII	ACRYGT	2 cut(s)	357, 569
AgeI	ACCGGT	1 cut(s)	943
AjiI	CACGTC	1 cut(s)	134
AluBI	AGCT	7 cut(s)	124, 792, 873, 955, 1045, 1253, 1350
AluI	AGCT	7 cut(s)	124, 792, 873, 955, 1045, 1253, 1350
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	3 cut(s)	279, 289, 302
ApeKI	GCWGC	2 cut(s)	260, 890
ApoI	RAATTY	5 cut(s)	33, 81, 161, 1290, 1342
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
AseI	ATTAAT	2 cut(s)	1001, 1199
AsiGI	ACCGGT	1 cut(s)	943
AspS9I	GGNCC	4 cut(s)	100, 400, 941, 1304
AsuHPI	GGTGA	3 cut(s)	25, 1079, 1243
AvaII	GGWCC	4 cut(s)	100, 400, 941, 1304
BamHI	GGATCC	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	387
BbsI	GAAGAC	3 cut(s)	136, 249, 669
BbvI	GCAGC	2 cut(s)	247, 877
BccI	CCATC	3 cut(s)	70, 818, 841
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	5 cut(s)	266, 492, 1254, 1347, 1351
BglII	AGATCT	1 cut(s)	800
BisI	GCNGC	2 cut(s)	261, 891
BlsI	GCNGC	2 cut(s)	262, 892
BmcAI	AGTACT	1 cut(s)	478
Bme18I	GGWCC	4 cut(s)	100, 400, 941, 1304
BmgBI	CACGTC	1 cut(s)	134
BmgT120I	GGNCC	4 cut(s)	100, 400, 941, 1304
BmiI	GGNNCC	6 cut(s)	101, 102, 296, 389, 401, 463
BmrI	ACTGGG	1 cut(s)	932
BmsI	GCATC	3 cut(s)	491, 617, 887
BmuI	ACTGGG	1 cut(s)	932
BpiI	GAAGAC	3 cut(s)	136, 249, 669
BpuEI	CTTGAG	2 cut(s)	1176, 1204
BsaWI	WCCGGW	3 cut(s)	402, 943, 1155
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 77, 97, 397
Bse118I	RCCGGY	1 cut(s)	943
Bse1I	ACTGG	6 cut(s)	31, 515, 628, 676, 694, 927
BseGI	GGATG	3 cut(s)	632, 829, 1083
BseLI	CCNNNNNNNGG	4 cut(s)	76, 77, 97, 397
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	6 cut(s)	31, 515, 628, 676, 694, 927
BseXI	GCAGC	2 cut(s)	247, 877
BshNI	GGYRCC	1 cut(s)	387
BshTI	ACCGGT	1 cut(s)	943
BsiSI	CCGG	4 cut(s)	403, 944, 1156, 1307
BslFI	GGGAC	4 cut(s)	113, 413, 636, 939
BslI	CCNNNNNNNGG	4 cut(s)	76, 77, 97, 397
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	4 cut(s)	113, 413, 636, 939
Bsp1407I	TGTACA	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	271, 294, 800
BspCNI	CTCAG	1 cut(s)	370
BspHI	TCATGA	2 cut(s)	795, 1015
BspLI	GGNNCC	6 cut(s)	101, 102, 296, 389, 401, 463
BspPI	GGATC	3 cut(s)	279, 289, 302
BspT107I	GGYRCC	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	943
BsrGI	TGTACA	1 cut(s)	416
BsrI	ACTGG	6 cut(s)	31, 515, 628, 676, 694, 927
BssAI	RCCGGY	1 cut(s)	943
BssMI	GATC	3 cut(s)	271, 294, 800
Bst4CI	ACNGT	1 cut(s)	416
Bst6I	CTCTTC	1 cut(s)	1065
BstAUI	TGTACA	1 cut(s)	416
BstDEI	CTNAG	4 cut(s)	125, 299, 378, 788
BstF5I	GGATG	3 cut(s)	632, 829, 1083
BstKTI	GATC	3 cut(s)	274, 297, 803
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	3 cut(s)	271, 294, 800
BstNSI	RCATGY	5 cut(s)	361, 573, 900, 1099, 1147
BstV1I	GCAGC	2 cut(s)	247, 877
BstV2I	GAAGAC	3 cut(s)	136, 249, 669
BstX2I	RGATCY	2 cut(s)	294, 800
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	2 cut(s)	294, 800
BtrI	CACGTC	1 cut(s)	134
BtsCI	GGATG	3 cut(s)	632, 829, 1083
BtsIMutI	CAGTG	1 cut(s)	375
CciI	TCATGA	2 cut(s)	795, 1015
Cfr10I	RCCGGY	1 cut(s)	943
Cfr13I	GGNCC	4 cut(s)	100, 400, 941, 1304
Csp6I	GTAC	6 cut(s)	211, 417, 477, 508, 552, 1093
CspAI	ACCGGT	1 cut(s)	943
CspCI	CAANNNNNGTGG	2 cut(s)	801, 836
CviQI	GTAC	6 cut(s)	211, 417, 477, 508, 552, 1093
DdeI	CTNAG	4 cut(s)	125, 299, 378, 788
DpnI	GATC	3 cut(s)	273, 296, 802
DpnII	GATC	3 cut(s)	271, 294, 800
DraI	TTTAAA	1 cut(s)	1248
Eam1104I	CTCTTC	1 cut(s)	1065
EarI	CTCTTC	1 cut(s)	1065
Eco47I	GGWCC	4 cut(s)	100, 400, 941, 1304
Eco57I	CTGAAG	5 cut(s)	202, 510, 681, 930, 951
EcoO109I	RGGNCCY	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	880
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FaqI	GGGAC	4 cut(s)	113, 413, 636, 939
Fnu4HI	GCNGC	2 cut(s)	261, 891
FokI	GGATG	3 cut(s)	639, 836, 1090
Fsp4HI	GCNGC	2 cut(s)	261, 891
FspBI	CTAG	5 cut(s)	266, 492, 1254, 1347, 1351
GluI	GCNGC	2 cut(s)	261, 891
HapII	CCGG	4 cut(s)	403, 944, 1156, 1307
HindIII	AAGCTT	1 cut(s)	953
HinfI	GANTC	3 cut(s)	1130, 1234, 1282
HpaII	CCGG	4 cut(s)	403, 944, 1156, 1307
HphI	GGTGA	3 cut(s)	25, 1079, 1243
Hpy166II	GTNNAC	2 cut(s)	16, 949
Hpy188I	TCNGA	7 cut(s)	529, 621, 661, 777, 910, 985, 1052
Hpy188III	TCNNGA	6 cut(s)	266, 498, 796, 991, 1016, 1221
Hpy8I	GTNNAC	2 cut(s)	16, 949
HpyAV	CCTTC	5 cut(s)	390, 475, 664, 1070, 1175
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	4 cut(s)	591, 878, 900, 1210
HpyF3I	CTNAG	4 cut(s)	125, 299, 378, 788
HpySE526I	ACGT	1 cut(s)	133
KflI	GGGWCCC	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	271, 294, 800
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	2 cut(s)	247, 877
LweI	GCATC	3 cut(s)	491, 617, 887
MaeI	CTAG	5 cut(s)	266, 492, 1254, 1347, 1351
MaeII	ACGT	1 cut(s)	133
MaeIII	GTNAC	1 cut(s)	1146
MalI	GATC	3 cut(s)	273, 296, 802
MboI	GATC	3 cut(s)	271, 294, 800
MboII	GAAGA	9 cut(s)	141, 254, 674, 778, 923, 957, 1082, 1171, 1309
MfeI	CAATTG	1 cut(s)	116
MflI	RGATCY	2 cut(s)	294, 800
MmeI	TCCRAC	1 cut(s)	1320
Mph1103I	ATGCAT	1 cut(s)	880
MseI	TTAA	6 cut(s)	516, 860, 1001, 1170, 1199, 1247
MspI	CCGG	4 cut(s)	403, 944, 1156, 1307
MunI	CAATTG	1 cut(s)	116
NdeII	GATC	3 cut(s)	271, 294, 800
NlaIV	GGNNCC	6 cut(s)	101, 102, 296, 389, 401, 463
NsiI	ATGCAT	1 cut(s)	880
NspI	RCATGY	5 cut(s)	361, 573, 900, 1099, 1147
PagI	TCATGA	2 cut(s)	795, 1015
PciI	ACATGT	2 cut(s)	357, 569
PfeI	GAWTC	3 cut(s)	1130, 1234, 1282
PflFI	GACNNNGTC	1 cut(s)	335
PinAI	ACCGGT	1 cut(s)	943
PkrI	GCNGC	2 cut(s)	262, 892
PpuMI	RGGWCCY	1 cut(s)	100
PscI	ACATGT	2 cut(s)	357, 569
PshBI	ATTAAT	2 cut(s)	1001, 1199
Psp5II	RGGWCCY	1 cut(s)	100
PspN4I	GGNNCC	6 cut(s)	101, 102, 296, 389, 401, 463
PspPI	GGNCC	4 cut(s)	100, 400, 941, 1304
PspPPI	RGGWCCY	1 cut(s)	100
PsuI	RGATCY	2 cut(s)	294, 800
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	6 cut(s)	212, 418, 478, 509, 553, 1094
RsaNI	GTAC	6 cut(s)	211, 417, 477, 508, 552, 1093
SaqAI	TTAA	6 cut(s)	516, 860, 1001, 1170, 1199, 1247
SatI	GCNGC	2 cut(s)	261, 891
Sau3AI	GATC	3 cut(s)	271, 294, 800
Sau96I	GGNCC	4 cut(s)	100, 400, 941, 1304
ScaI	AGTACT	1 cut(s)	478
SfaNI	GCATC	3 cut(s)	491, 617, 887
SinI	GGWCC	4 cut(s)	100, 400, 941, 1304
SmlI	CTYRAG	2 cut(s)	1191, 1219
SmoI	CTYRAG	2 cut(s)	1191, 1219
SspMI	CTAG	5 cut(s)	266, 492, 1254, 1347, 1351
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	1 cut(s)	136
TatI	WGTACW	4 cut(s)	416, 476, 551, 1092
TfiI	GAWTC	3 cut(s)	1130, 1234, 1282
Tru1I	TTAA	6 cut(s)	516, 860, 1001, 1170, 1199, 1247
Tru9I	TTAA	6 cut(s)	516, 860, 1001, 1170, 1199, 1247
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	2 cut(s)	260, 890
TspGWI	ACGGA	1 cut(s)	855
TspRI	CASTG	1 cut(s)	382
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	4 cut(s)	100, 400, 941, 1304
VspI	ATTAAT	2 cut(s)	1001, 1199
XapI	RAATTY	5 cut(s)	33, 81, 161, 1290, 1342
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	5 cut(s)	361, 573, 900, 1099, 1147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XspI	CTAG	5 cut(s)	266, 492, 1254, 1347, 1351
ZrmI	AGTACT	1 cut(s)	478
Zsp2I	ATGCAT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.