Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017440

Physical Location & Seq

Genomic Coordinates Reverse (-)

19310828 .. 19311442

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30507

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAAGTTAGGTGTCAACCATAGCAATGGCCTCATTTGGTCTCTGACGTCGTGGACAACTAATTACTACCCACCACTGGGAATATTTACCCTTGATTGGGACCCAAATGGCCGCCAATTGGAAATCCGGGGACATAATTGTGGAGGCTATAACACTGATGGAGGGTGCCAGAGAAGTTCCTGGCCACCTGATTGTTTGGCAGATTTTGATGATCAATATGAGCTGAAAAAGGGTTACTTTAAACCAATCACCTCGATTTTTACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

89

Amino Acids

10.11

Weight (kDa)

5.44

Isoelectric Point (pI)

14.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024981 RchiOBHm_Chr5g0025191 RchiOBHm_Chr5g0025411
rosa_multiflora	Rmu_sc0003576.1_g000019 Rmu_sc0006827.1_g000018
rosa_roxburghii	Rroxscaffold_1G00054470
rosa_rugosa	Rorug05G0085000.1
rosa_samantha	Rh5AG177100 Rh5BG175100 Rh5BG175200 Rh5CG192700 Rh5CG194500
rosa_wichuraiana	Rw5G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	165
AciI	CCGC	1 cut(s)	112
AcoI	YGGCCR	2 cut(s)	109, 182
AcyI	GRCGYC	1 cut(s)	47
AfiI	CCNNNNNNNGG	5 cut(s)	76, 77, 96, 97, 118
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	45
AoxI	GGCC	3 cut(s)	28, 109, 182
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	100
BalI	TGGCCA	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	165
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	181
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	45
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	2 cut(s)	128, 181
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	3 cut(s)	101, 102, 167
BmrFI	CCNGG	2 cut(s)	128, 181
BmrI	ACTGGG	1 cut(s)	86
BmuI	ACTGGG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 77, 96, 97, 118
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	5 cut(s)	76, 77, 96, 97, 118
BseMI	GCAATG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	30, 111, 184
BshNI	GGYRCC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	2 cut(s)	113, 144
BslI	CCNNNNNNNGG	5 cut(s)	76, 77, 96, 97, 118
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	2 cut(s)	113, 144
BsnI	GGCC	3 cut(s)	30, 111, 184
Bso31I	GGTCTC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	3 cut(s)	30, 111, 184
BspHI	TCATGA	1 cut(s)	266
BspLI	GGNNCC	3 cut(s)	101, 102, 167
BspT107I	GGYRCC	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	211
BssNI	GRCGYC	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	47
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	211
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	126, 179
BstXI	CCANNNNNNTGG	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	30, 111, 184
BtsIMutI	CAGTG	2 cut(s)	74, 153
CciI	TCATGA	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	100
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	5 cut(s)	30, 111, 147, 184, 223
CviKI_1	RGCY	5 cut(s)	30, 111, 147, 184, 223
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
DraI	TTTAAA	1 cut(s)	241
EaeI	YGGCCR	2 cut(s)	109, 182
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	179
FaeI	CATG	1 cut(s)	270
FaiI	YATR	5 cut(s)	21, 135, 150, 219, 268
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	2 cut(s)	113, 144
FatI	CATG	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	112
GluI	GCNGC	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	30, 111, 184
HapII	CCGG	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	16, 54
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	1 cut(s)	267
Hpy8I	GTNNAC	2 cut(s)	16, 54
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	270
KflI	GGGWCCC	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	211
LpnPI	CCDG	6 cut(s)	62, 140, 166, 182, 193, 201
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MfeI	CAATTG	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	3 cut(s)	61, 116, 136
MluNI	TGGCCA	1 cut(s)	184
MnlI	CCTC	4 cut(s)	41, 137, 155, 262
Mox20I	TGGCCA	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	184
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	2 cut(s)	24, 138
Msp20I	TGGCCA	1 cut(s)	184
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	2 cut(s)	128, 181
MunI	CAATTG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	181
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	3 cut(s)	101, 102, 167
PagI	TCATGA	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	113
PpuMI	RGGWCCY	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	3 cut(s)	101, 102, 167
PspPI	GGNCC	1 cut(s)	100
PspPPI	RGGWCCY	1 cut(s)	100
RseI	CAYNNNNRTG	2 cut(s)	24, 138
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	128, 181
SetI	ASST	5 cut(s)	13, 50, 190, 225, 254
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	2 cut(s)	24, 138
Sse9I	AATT	3 cut(s)	61, 116, 136
SsiI	CCGC	1 cut(s)	112
SspI	AATATT	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	126, 179
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	1 cut(s)	254
TasI	AATT	3 cut(s)	61, 116, 136
TauI	GCSGC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	81, 160
TspDTI	ATGAA	2 cut(s)	17, 255
TspRI	CASTG	2 cut(s)	81, 160
VpaK11BI	GGWCC	1 cut(s)	100
ZraI	GACGTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.