Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0017440

Physical Location & Seq

Genomic Coordinates Forward (+)

19785346 .. 19804641

Gene Structure 19296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG177100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTTTCAAATGAGTATGAAGACTACCTCACTTACGCTGCTCTAGAGGATCAAACTAATGAACCAGAATGGATCCTAAGATTTCAGGGGAGACTTTATGATAATGATGACCAAGTCGGTATTGTAGAAGCAGACATGTGTGATGGGTATAACACTGATGGAGGGTGCAGAAGAAGGGACCGGACACCAGACTGTACATCAGGGTTTGAGTTTAGAAATAATTTTGAGCAAAAAAATGGTTCCTTCAAACCAAGTACCTCCTCGTCTAGGTCAAGATGCCCGTACTGGCTTAATTTTGCTTCAGATAAAAATTACAGCAGTAGTAGTACTGATTGTCAGGCTACATGTTGGCAAGATTGTGATTGCATTGGATATGACTTTCTATTTGATAATATGACTGGATGCCGATTTTGGAGTGTAGATTGTCACTTCTCTGAAGACCTTACTGCACTCGGTTCCTCTGGGCAAAATCATATTATCACTCCGATTGTTGCAGTTGCCGCTGATAGGTATTTTCCTGCTGGAGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

177

Amino Acids

20.13

Weight (kDa)

4.27

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024981 RchiOBHm_Chr5g0025191 RchiOBHm_Chr5g0025411
rosa_multiflora	Rmu_sc0003576.1_g000019 Rmu_sc0006827.1_g000018
rosa_roxburghii	Rroxscaffold_1G00054470
rosa_rugosa	Rorug05G0085000.1
rosa_samantha	Rh5AG177100 Rh5BG175100 Rh5BG175200 Rh5CG192700 Rh5CG194500
rosa_wichuraiana	Rw5G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	501
AclWI	GGATC	3 cut(s)	57, 67, 80
AcuI	CTGAAG	2 cut(s)	285, 456
AfaI	GTAC	4 cut(s)	196, 256, 284, 328
AfiI	CCNNNNNNNGG	2 cut(s)	267, 507
AflIII	ACRYGT	2 cut(s)	135, 344
AgsI	TTSAA	2 cut(s)	9, 247
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	3 cut(s)	57, 67, 80
ApeKI	GCWGC	1 cut(s)	38
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AspS9I	GGNCC	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	178
BamHI	GGATCC	1 cut(s)	72
BbsI	GAAGAC	2 cut(s)	27, 444
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	2 cut(s)	137, 152
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	2 cut(s)	44, 267
BisI	GCNGC	2 cut(s)	39, 501
BlsI	GCNGC	2 cut(s)	40, 502
BmcAI	AGTACT	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	4 cut(s)	74, 179, 241, 457
BmsI	GCATC	2 cut(s)	266, 392
BpiI	GAAGAC	2 cut(s)	27, 444
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 507
Bse1I	ACTGG	2 cut(s)	290, 403
BseGI	GGATG	1 cut(s)	407
BseLI	CCNNNNNNNGG	2 cut(s)	267, 507
BseNI	ACTGG	2 cut(s)	290, 403
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	25
BsgI	GTGCAG	2 cut(s)	187, 432
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	267, 507
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	49, 72
BspACI	CCGC	1 cut(s)	501
BspLI	GGNNCC	4 cut(s)	74, 179, 241, 457
BspPI	GGATC	3 cut(s)	57, 67, 80
BsrGI	TGTACA	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	290, 403
BssMI	GATC	2 cut(s)	49, 72
Bst4CI	ACNGT	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	77
BstENI	CCTNNNNNAGG	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	407
BstKTI	GATC	2 cut(s)	52, 75
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	2 cut(s)	49, 72
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNSI	RCATGY	2 cut(s)	139, 348
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	2 cut(s)	27, 444
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	407
BtsIMutI	CAGTG	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	4 cut(s)	195, 255, 283, 327
CviAII	CATG	2 cut(s)	136, 345
CviJI	RGCY	2 cut(s)	289, 341
CviKI_1	RGCY	2 cut(s)	289, 341
CviQI	GTAC	4 cut(s)	195, 255, 283, 327
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	51, 74
DpnII	GATC	2 cut(s)	49, 72
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	2 cut(s)	285, 456
EcoNI	CCTNNNNNAGG	1 cut(s)	265
FaeI	CATG	2 cut(s)	139, 348
FaiI	YATR	8 cut(s)	18, 99, 137, 150, 346, 375, 395, 474
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	135, 344
Fnu4HI	GCNGC	2 cut(s)	39, 501
FokI	GGATG	1 cut(s)	414
Fsp4HI	GCNGC	2 cut(s)	39, 501
FspBI	CTAG	2 cut(s)	44, 267
GluI	GCNGC	2 cut(s)	39, 501
HapII	CCGG	1 cut(s)	181
Hin1II	CATG	2 cut(s)	139, 348
HpaII	CCGG	1 cut(s)	181
Hpy188I	TCNGA	3 cut(s)	304, 436, 486
Hpy188III	TCNNGA	2 cut(s)	44, 273
HpyAV	CCTTC	2 cut(s)	168, 253
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	4 cut(s)	168, 366, 449, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	139, 348
Kzo9I	GATC	2 cut(s)	49, 72
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	2 cut(s)	266, 392
MaeI	CTAG	2 cut(s)	44, 267
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	2 cut(s)	51, 74
MboI	GATC	2 cut(s)	49, 72
MboII	GAAGA	3 cut(s)	32, 183, 449
MflI	RGATCY	1 cut(s)	72
MluCI	AATT	3 cut(s)	220, 292, 310
MnlI	CCTC	6 cut(s)	38, 40, 155, 268, 271, 469
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	500
NdeII	GATC	2 cut(s)	49, 72
NlaIII	CATG	2 cut(s)	139, 348
NlaIV	GGNNCC	4 cut(s)	74, 179, 241, 457
NmuCI	GTSAC	1 cut(s)	425
NspI	RCATGY	2 cut(s)	139, 348
PciI	ACATGT	2 cut(s)	135, 344
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	40, 502
PscI	ACATGT	2 cut(s)	135, 344
PspN4I	GGNNCC	4 cut(s)	74, 179, 241, 457
PspPI	GGNCC	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	72
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	4 cut(s)	196, 256, 284, 328
RsaNI	GTAC	4 cut(s)	195, 255, 283, 327
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	39, 501
Sau3AI	GATC	2 cut(s)	49, 72
Sau96I	GGNCC	1 cut(s)	178
ScaI	AGTACT	1 cut(s)	328
SetI	ASST	5 cut(s)	30, 260, 272, 444, 512
SfaNI	GCATC	2 cut(s)	266, 392
SinI	GGWCC	1 cut(s)	178
Sse9I	AATT	3 cut(s)	220, 292, 310
SsiI	CCGC	1 cut(s)	501
SspMI	CTAG	2 cut(s)	44, 267
TaaI	ACNGT	1 cut(s)	194
TasI	AATT	3 cut(s)	220, 292, 310
TatI	WGTACW	2 cut(s)	194, 326
TauI	GCSGC	1 cut(s)	503
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	33, 75
TspRI	CASTG	1 cut(s)	160
Tth111I	GACNNNGTC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	178
XagI	CCTNNNNNAGG	1 cut(s)	265
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	2 cut(s)	139, 348
XspI	CTAG	2 cut(s)	44, 267
ZrmI	AGTACT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.