Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017440

Physical Location & Seq

Genomic Coordinates Reverse (-)

75869083 .. 75870613

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00054470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTTTCAAATGAGGATGAAGACTACCTCACTTACGCTGCTCTAGAGGATCAAACTAATGAACCAGAATGGATCCTAAGATTTCAGGGGAGACTTTATGACAATGATGACCAAGTCGGTATTGTAGAATCAGACATGTGTGATGGGTATAACACTGATGGAGGGTGCAGAAGAAGGGACCCAATAATTTTGAGCAAAAAAATGGTTCCTTCAAACCAAGTACCTCCTCGTCTAGTTCAAGATGCCCGTAAGAACAGGACGAAGATTTATCAGAAAGAACTACTTAGCTTCATGAGATCTAATAGACCAACTGATGTGGATGGACTTCAAATTGACGGAAAGATAGGGCTGGATTTAAGTGTATTTAGCTATGCGTCTGTATTAGCTGCCACATGCAACTTCTCCGAAGAAAACAAACTGGGACAAGGGGGCTTTGGAACGGTTTACAAGGGAAAACTGGTGACTGGGAGACGAAATAGCTGTGAAGAAGCTTTCAAAATCTTCAGGGCAAGGCGTGTCAGAGTTCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

177

Amino Acids

20.16

Weight (kDa)

5.71

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024981 RchiOBHm_Chr5g0025191 RchiOBHm_Chr5g0025411
rosa_multiflora	Rmu_sc0003576.1_g000019 Rmu_sc0006827.1_g000018
rosa_roxburghii	Rroxscaffold_1G00054470
rosa_rugosa	Rorug05G0085000.1
rosa_samantha	Rh5AG177100 Rh5BG175100 Rh5BG175200 Rh5CG192700 Rh5CG194500
rosa_wichuraiana	Rw5G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	57, 67, 80
AcuI	CTGAAG	1 cut(s)	487
AfaI	GTAC	1 cut(s)	222
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	6 cut(s)	9, 213, 239, 329, 496, 527
AluBI	AGCT	5 cut(s)	288, 369, 386, 480, 491
AluI	AGCT	5 cut(s)	288, 369, 386, 480, 491
Alw26I	GTCTC	2 cut(s)	85, 463
AlwI	GGATC	3 cut(s)	57, 67, 80
ApeKI	GCWGC	2 cut(s)	38, 386
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	178
BamHI	GGATCC	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	25, 373
BccI	CCATC	3 cut(s)	137, 152, 314
BcoDI	GTCTC	2 cut(s)	85, 463
BfaI	CTAG	2 cut(s)	44, 233
BglII	AGATCT	1 cut(s)	296
BisI	GCNGC	2 cut(s)	39, 387
BlsI	GCNGC	2 cut(s)	40, 388
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	4 cut(s)	74, 179, 180, 207
BmrI	ACTGGG	2 cut(s)	428, 474
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	2 cut(s)	428, 474
BpiI	GAAGAC	1 cut(s)	27
Bse1I	ACTGG	3 cut(s)	423, 462, 469
BseGI	GGATG	2 cut(s)	22, 325
BseNI	ACTGG	3 cut(s)	423, 462, 469
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	25, 373
BsgI	GTGCAG	1 cut(s)	187
BslFI	GGGAC	2 cut(s)	191, 435
BsmAI	GTCTC	2 cut(s)	85, 463
BsmBI	CGTCTC	1 cut(s)	463
BsmFI	GGGAC	2 cut(s)	191, 435
Bsp143I	GATC	3 cut(s)	49, 72, 296
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	4 cut(s)	74, 179, 180, 207
BspPI	GGATC	3 cut(s)	57, 67, 80
BsrI	ACTGG	3 cut(s)	423, 462, 469
BssMI	GATC	3 cut(s)	49, 72, 296
Bst4CI	ACNGT	1 cut(s)	442
BstDEI	CTNAG	2 cut(s)	77, 284
BstF5I	GGATG	2 cut(s)	22, 325
BstKTI	GATC	3 cut(s)	52, 75, 299
BstMAI	GTCTC	2 cut(s)	85, 463
BstMBI	GATC	3 cut(s)	49, 72, 296
BstNSI	RCATGY	2 cut(s)	139, 396
BstV1I	GCAGC	2 cut(s)	25, 373
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	2 cut(s)	72, 296
BstYI	RGATCY	2 cut(s)	72, 296
BtsCI	GGATG	2 cut(s)	22, 325
BtsIMutI	CAGTG	1 cut(s)	153
CciI	TCATGA	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	178
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	221
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	3 cut(s)	136, 292, 393
CviJI	RGCY	7 cut(s)	288, 349, 369, 386, 432, 480, 491
CviKI_1	RGCY	7 cut(s)	288, 349, 369, 386, 432, 480, 491
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	77, 284
DpnI	GATC	3 cut(s)	51, 74, 298
DpnII	GATC	3 cut(s)	49, 72, 296
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	487
EcoO109I	RGGNCCY	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	3 cut(s)	139, 295, 396
FaiI	YATR	6 cut(s)	99, 137, 150, 293, 372, 394
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	2 cut(s)	191, 435
FatI	CATG	3 cut(s)	135, 291, 392
Fnu4HI	GCNGC	2 cut(s)	39, 387
FokI	GGATG	2 cut(s)	29, 332
Fsp4HI	GCNGC	2 cut(s)	39, 387
FspBI	CTAG	2 cut(s)	44, 233
GluI	GCNGC	2 cut(s)	39, 387
HgaI	GACGC	1 cut(s)	363
Hin1II	CATG	3 cut(s)	139, 295, 396
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	1 cut(s)	128
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	4 cut(s)	133, 273, 406, 521
Hpy188III	TCNNGA	4 cut(s)	44, 239, 292, 527
Hpy8I	GTNNAC	1 cut(s)	445
HpyAV	CCTTC	2 cut(s)	168, 219
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4V	TGCA	2 cut(s)	168, 396
HpyF3I	CTNAG	2 cut(s)	77, 284
Hsp92II	CATG	3 cut(s)	139, 295, 396
KflI	GGGWCCC	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	49, 72, 296
LpnPI	CCDG	8 cut(s)	71, 78, 241, 335, 404, 443, 450, 490
Lsp1109I	GCAGC	2 cut(s)	25, 373
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	44, 233
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	3 cut(s)	51, 74, 298
MboI	GATC	3 cut(s)	49, 72, 296
MboII	GAAGA	6 cut(s)	32, 183, 274, 419, 493, 497
MflI	RGATCY	2 cut(s)	72, 296
MluCI	AATT	2 cut(s)	186, 330
MnlI	CCTC	6 cut(s)	7, 38, 40, 155, 234, 237
MseI	TTAA	1 cut(s)	356
NdeII	GATC	3 cut(s)	49, 72, 296
NlaIII	CATG	3 cut(s)	139, 295, 396
NlaIV	GGNNCC	4 cut(s)	74, 179, 180, 207
NmuCI	GTSAC	1 cut(s)	460
NspI	RCATGY	2 cut(s)	139, 396
PagI	TCATGA	1 cut(s)	291
PciI	ACATGT	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	128
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	40, 388
PpuMI	RGGWCCY	1 cut(s)	178
PscI	ACATGT	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	178
PspN4I	GGNNCC	4 cut(s)	74, 179, 180, 207
PspPI	GGNCC	1 cut(s)	178
PspPPI	RGGWCCY	1 cut(s)	178
PsuI	RGATCY	2 cut(s)	72, 296
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	2 cut(s)	39, 387
Sau3AI	GATC	3 cut(s)	49, 72, 296
Sau96I	GGNCC	1 cut(s)	178
SetI	ASST	7 cut(s)	30, 226, 290, 371, 388, 482, 493
SfaNI	GCATC	1 cut(s)	232
SinI	GGWCC	1 cut(s)	178
Sse9I	AATT	2 cut(s)	186, 330
SspMI	CTAG	2 cut(s)	44, 233
TaaI	ACNGT	1 cut(s)	442
TasI	AATT	2 cut(s)	186, 330
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	2 cut(s)	38, 386
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	3 cut(s)	33, 75, 280
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	160
Tth111I	GACNNNGTC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	178
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	2 cut(s)	139, 396
XspI	CTAG	2 cut(s)	44, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.