Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006827.1

Orthogroup ID

OG0017440

Physical Location & Seq

Genomic Coordinates Reverse (-)

53935 .. 54340

Gene Structure 406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006827.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgaagttaggtgtcaacgatagcaatggctacatttggtctctgacgtcgtggacaactaattactacccaccactgggaatatttacccttgattggggacccaaatggccgccaattggaaatccggggacgtggggtgatgaaaggcttctgttcaattttagcattgtttcaaataagaatgaagactgcctgacgtacacttccgaaaaagatgatcaaaatggtgaatatttaccagaatgggtgatgagtttctatgggagactttataactataatggaggtgttgatattgcacgagcagataattgtggaggctataagttcccggccacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

114

Amino Acids

13.0

Weight (kDa)

4.43

Isoelectric Point (pI)

16.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024981 RchiOBHm_Chr5g0025191 RchiOBHm_Chr5g0025411
rosa_multiflora	Rmu_sc0003576.1_g000019 Rmu_sc0006827.1_g000018
rosa_roxburghii	Rroxscaffold_1G00054470
rosa_rugosa	Rorug05G0085000.1
rosa_samantha	Rh5AG177100 Rh5BG175100 Rh5BG175200 Rh5CG192700 Rh5CG194500
rosa_wichuraiana	Rw5G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
AatII	GACGTC	1 cut(s)	50
AciI	CCGC	1 cut(s)	113
AcoI	YGGCCR	2 cut(s)	110, 336
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	5 cut(s)	76, 77, 96, 97, 119
AgsI	TTSAA	2 cut(s)	160, 177
AjiI	CACGTC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	45, 262
AoxI	GGCC	2 cut(s)	110, 336
Asp700I	GAANNNNTTC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	2 cut(s)	129, 335
AsuHPI	GGTGA	3 cut(s)	152, 242, 262
AvaII	GGWCC	1 cut(s)	101
BauI	CACGAG	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	195
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	2 cut(s)	129, 335
BcoDI	GTCTC	2 cut(s)	45, 262
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
Bme1390I	CCNGG	2 cut(s)	129, 335
Bme18I	GGWCC	1 cut(s)	101
BmgBI	CACGTC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	102, 103
BmrFI	CCNGG	2 cut(s)	129, 335
BmrI	ACTGGG	1 cut(s)	86
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	195
BpuMI	CCSGG	2 cut(s)	129, 335
BsaHI	GRCGYC	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 77, 96, 97, 119
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	128
BseLI	CCNNNNNNNGG	5 cut(s)	76, 77, 96, 97, 119
BseMI	GCAATG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	112, 338
BsiSI	CCGG	2 cut(s)	128, 335
BslFI	GGGAC	2 cut(s)	114, 145
BslI	CCNNNNNNNGG	5 cut(s)	76, 77, 96, 97, 119
BsmAI	GTCTC	2 cut(s)	45, 262
BsmFI	GGGAC	2 cut(s)	114, 145
BsnI	GGCC	2 cut(s)	112, 338
Bso31I	GGTCTC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	2 cut(s)	112, 338
BspLI	GGNNCC	2 cut(s)	102, 103
BspTNI	GGTCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	1 cut(s)	220
BssNI	GRCGYC	1 cut(s)	47
BssSI	CACGAG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	47
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	2 cut(s)	45, 262
BstMBI	GATC	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	127, 333
BstV2I	GAAGAC	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	112, 338
BtrI	CACGTC	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	202
CviJI	RGCY	5 cut(s)	30, 112, 151, 324, 338
CviKI_1	RGCY	5 cut(s)	30, 112, 151, 324, 338
CviQI	GTAC	1 cut(s)	202
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EaeI	YGGCCR	2 cut(s)	110, 336
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	101
FaiI	YATR	4 cut(s)	264, 276, 282, 327
FaqI	GGGAC	2 cut(s)	114, 145
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	113
GluI	GCNGC	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	112, 338
HapII	CCGG	2 cut(s)	128, 335
Hin1I	GRCGYC	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HpaII	CCGG	2 cut(s)	128, 335
HphI	GGTGA	3 cut(s)	152, 242, 262
Hpy166II	GTNNAC	3 cut(s)	16, 54, 204
Hpy188I	TCNGA	2 cut(s)	45, 211
Hpy8I	GTNNAC	3 cut(s)	16, 54, 204
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4IV	ACGT	3 cut(s)	47, 134, 200
HpyCH4V	TGCA	1 cut(s)	302
HpySE526I	ACGT	3 cut(s)	47, 134, 200
Hsp92I	GRCGYC	1 cut(s)	47
KflI	GGGWCCC	1 cut(s)	101
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	4 cut(s)	62, 141, 209, 255
MaeII	ACGT	3 cut(s)	47, 134, 200
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	1 cut(s)	200
MfeI	CAATTG	1 cut(s)	117
MluCI	AATT	4 cut(s)	61, 117, 160, 313
MnlI	CCTC	2 cut(s)	281, 314
MroXI	GAANNNNTTC	1 cut(s)	150
MspI	CCGG	2 cut(s)	128, 335
MspR9I	CCNGG	2 cut(s)	129, 335
MunI	CAATTG	1 cut(s)	117
NciI	CCSGG	2 cut(s)	129, 335
NdeII	GATC	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	102, 103
PdmI	GAANNNNTTC	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	114
PpuMI	RGGWCCY	1 cut(s)	101
PsiI	TTATAA	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	102, 103
PspPI	GGNCC	1 cut(s)	101
PspPPI	RGGWCCY	1 cut(s)	101
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	129, 335
SetI	ASST	6 cut(s)	13, 50, 137, 203, 292, 344
SinI	GGWCC	1 cut(s)	101
Sse9I	AATT	4 cut(s)	61, 117, 160, 313
SsiI	CCGC	1 cut(s)	113
SspI	AATATT	2 cut(s)	84, 236
StyD4I	CCNGG	2 cut(s)	127, 333
TaiI	ACGT	3 cut(s)	50, 137, 203
TasI	AATT	4 cut(s)	61, 117, 160, 313
TauI	GCSGC	1 cut(s)	115
TscAI	CASTG	1 cut(s)	81
TspDTI	ATGAA	3 cut(s)	17, 159, 201
TspRI	CASTG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	150
ZraI	GACGTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.