Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0017440

Physical Location & Seq

Genomic Coordinates Forward (+)

18425630 .. 18433135

Gene Structure 7506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG175100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTTTCAAATGAGTATGAAGACTACCTCACTTACGCTGCTCTAGAGGATCAAACTAATGAACCAGAATGGATCCTAAGATTTCAGGGGAGACTTTATGATAATGATGACCAAGTCGGTATTGTAGAAGCAGACATGTGTGATGGGTATAACACTGAGGGAGGGTGCAGAAGAAGGGACTGGACACCAGACTGTACATCAGGGTTTGAGTTTAGCAATAATTTTGAGCAAAAAAATGGTTCCTTCAAACCAAGTACCTCCTCGTCTAGTTCAAGATGCCCGTACTGGCTTAATTTTGCTTCAGATAAAAATTACAGCAGTAGTAGTACTGATTGTCAGGCTACATGTTGGCAAGATTGTGATTGCATTGGATATGACTTTCTATTTGATAATCAGACTGGATGCCGATTTTGGAGTGTAGATTGTCACTTCTCTGAAGACCTTACTGGTTCGGGTACTACATGCAACTGGTTTTGTAGTTATGACAAGACCACCAATGATAAGAACATCATCATCTCGCAAAAAGGCTACTGCTGCGGCTCTAGTGGTAATGGTGCTCTGCATCTTCTGCTGTCTACTGAGAAGAAGGAAAATAAAACTTTCAGGTTGGCTGGGCGGGTGGAGACGTCTTTCTGCCAGAATCTGATGCGGTTGCATCGTGCACAGAGGCAGCGGTCTCTGATCTGGGATGGGCACAGTGTTGCCTTTTCTGGGAGTCGTCTTCGGAGCAGGATGGCAGTGTTGGATGATTGCAGCGCAGATCTATGGCGGTGGTCTCTTGCTTTCTCTCTCGTCGGAGCCACTCTCGGCCTTGGATCAGAGCTCAACAGAGAACGCAACCATAGCTTCCCCTTTTCCAACAGAATCTCATCGTTTCCTCCAAGTCCAGAATTCAAGAACATGAGACGAAAGGATTATGCCGTCAAAGTTCATGGCGGAGCAGATGGGGGTTCAGCGCTAGTTGTGGCGCTTGCGGCGTCGTCTAGCTGCTCCATGGTGACTCAAAGCTTAAGCTTAATACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

341

Amino Acids

38.28

Weight (kDa)

5.55

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024981 RchiOBHm_Chr5g0025191 RchiOBHm_Chr5g0025411
rosa_multiflora	Rmu_sc0003576.1_g000019 Rmu_sc0006827.1_g000018
rosa_roxburghii	Rroxscaffold_1G00054470
rosa_rugosa	Rorug05G0085000.1
rosa_samantha	Rh5AG177100 Rh5BG175100 Rh5BG175200 Rh5CG192700 Rh5CG194500
rosa_wichuraiana	Rw5G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	629
AccI	GTMKAC	1 cut(s)	575
AciI	CCGC	7 cut(s)	537, 616, 649, 673, 769, 936, 974
AclWI	GGATC	4 cut(s)	57, 67, 80, 823
AcsI	RAATTY	1 cut(s)	890
AcuI	CTGAAG	2 cut(s)	285, 456
AcyI	GRCGYC	2 cut(s)	626, 977
AfaI	GTAC	5 cut(s)	196, 256, 284, 328, 457
AfeI	AGCGCT	1 cut(s)	957
AfiI	CCNNNNNNNGG	1 cut(s)	711
AflII	CTTAAG	1 cut(s)	1009
AflIII	ACRYGT	2 cut(s)	135, 344
AgsI	TTSAA	4 cut(s)	9, 247, 273, 895
AluBI	AGCT	5 cut(s)	823, 846, 987, 1008, 1014
AluI	AGCT	5 cut(s)	823, 846, 987, 1008, 1014
Alw21I	GWGCWC	3 cut(s)	559, 664, 825
Alw26I	GTCTC	5 cut(s)	85, 617, 681, 780, 898
Alw44I	GTGCAC	1 cut(s)	660
AlwI	GGATC	4 cut(s)	57, 67, 80, 823
AlwNI	CAGNNNCTG	1 cut(s)	643
Aor51HI	AGCGCT	1 cut(s)	957
AoxI	GGCC	1 cut(s)	808
ApaLI	GTGCAC	1 cut(s)	660
ApeKI	GCWGC	5 cut(s)	38, 534, 670, 753, 987
ApoI	RAATTY	1 cut(s)	890
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AspLEI	GCGC	3 cut(s)	758, 958, 970
AsuHPI	GGTGA	1 cut(s)	1009
BaeGI	GKGCMC	2 cut(s)	664, 696
BamHI	GGATCC	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	825
BbsI	GAAGAC	3 cut(s)	27, 444, 713
Bbv12I	GWGCWC	3 cut(s)	559, 664, 825
BbvI	GCAGC	5 cut(s)	25, 521, 682, 765, 974
BccI	CCATC	4 cut(s)	137, 683, 727, 938
BceAI	ACGGC	1 cut(s)	905
BcoDI	GTCTC	5 cut(s)	85, 617, 681, 780, 898
BfaI	CTAG	5 cut(s)	44, 267, 543, 959, 984
BfoI	RGCGCY	2 cut(s)	959, 971
BfrI	CTTAAG	1 cut(s)	1009
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	7 cut(s)	39, 535, 538, 671, 754, 975, 988
BlsI	GCNGC	7 cut(s)	40, 536, 539, 672, 755, 976, 989
BmcAI	AGTACT	1 cut(s)	328
BmiI	GGNNCC	3 cut(s)	74, 241, 799
BmsI	GCATC	5 cut(s)	266, 392, 571, 636, 664
BpiI	GAAGAC	3 cut(s)	27, 444, 713
BplI	GAGNNNNNCTC	2 cut(s)	789, 821
BsaHI	GRCGYC	2 cut(s)	626, 977
BsaI	GGTCTC	2 cut(s)	681, 780
BsaJI	CCNNGG	2 cut(s)	811, 993
Bsc4I	CCNNNNNNNGG	1 cut(s)	711
Bse1I	ACTGG	5 cut(s)	185, 290, 403, 451, 473
BseDI	CCNNGG	2 cut(s)	811, 993
BseGI	GGATG	4 cut(s)	407, 694, 738, 751
BseLI	CCNNNNNNNGG	1 cut(s)	711
BseMII	CTCAG	2 cut(s)	147, 570
BseNI	ACTGG	5 cut(s)	185, 290, 403, 451, 473
BseRI	GAGGAG	1 cut(s)	250
BseSI	GKGCMC	2 cut(s)	664, 696
BseXI	GCAGC	5 cut(s)	25, 521, 682, 765, 974
BseYI	CCCAGC	1 cut(s)	611
BsgI	GTGCAG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	810
BsiHKAI	GWGCWC	3 cut(s)	559, 664, 825
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	711
BsmAI	GTCTC	5 cut(s)	85, 617, 681, 780, 898
BsmBI	CGTCTC	2 cut(s)	617, 898
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	810
Bso31I	GGTCTC	2 cut(s)	681, 780
Bsp1286I	GDGCHC	4 cut(s)	559, 664, 696, 825
Bsp1407I	TGTACA	1 cut(s)	194
Bsp143I	GATC	5 cut(s)	49, 72, 681, 760, 815
Bsp19I	CCATGG	1 cut(s)	993
BspACI	CCGC	7 cut(s)	537, 616, 649, 673, 769, 936, 974
BspANI	GGCC	1 cut(s)	810
BspCNI	CTCAG	2 cut(s)	148, 571
BspLI	GGNNCC	3 cut(s)	74, 241, 799
BspPI	GGATC	4 cut(s)	57, 67, 80, 823
BspTI	CTTAAG	1 cut(s)	1009
BspTNI	GGTCTC	2 cut(s)	681, 780
BsrGI	TGTACA	1 cut(s)	194
BsrI	ACTGG	5 cut(s)	185, 290, 403, 451, 473
BssECI	CCNNGG	2 cut(s)	811, 993
BssMI	GATC	5 cut(s)	49, 72, 681, 760, 815
BssNI	GRCGYC	2 cut(s)	626, 977
BssT1I	CCWWGG	2 cut(s)	811, 993
Bst4CI	ACNGT	2 cut(s)	194, 698
BstACI	GRCGYC	2 cut(s)	626, 977
BstAFI	CTTAAG	1 cut(s)	1009
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstAUI	TGTACA	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	972
BstDEI	CTNAG	3 cut(s)	77, 156, 579
BstDSI	CCRYGG	1 cut(s)	993
BstF5I	GGATG	4 cut(s)	407, 694, 738, 751
BstH2I	RGCGCY	2 cut(s)	959, 971
BstHHI	GCGC	3 cut(s)	758, 958, 970
BstKTI	GATC	5 cut(s)	52, 75, 684, 763, 818
BstMAI	GTCTC	5 cut(s)	85, 617, 681, 780, 898
BstMBI	GATC	5 cut(s)	49, 72, 681, 760, 815
BstMWI	GCNNNNNNNGC	4 cut(s)	534, 568, 843, 974
BstNSI	RCATGY	3 cut(s)	139, 348, 465
BstSLI	GKGCMC	2 cut(s)	664, 696
BstV1I	GCAGC	5 cut(s)	25, 521, 682, 765, 974
BstV2I	GAAGAC	3 cut(s)	27, 444, 713
BstX2I	RGATCY	2 cut(s)	72, 760
BstYI	RGATCY	2 cut(s)	72, 760
BsuRI	GGCC	1 cut(s)	810
BtgI	CCRYGG	1 cut(s)	993
BtsCI	GGATG	4 cut(s)	407, 694, 738, 751
BtsI	GCAGTG	1 cut(s)	744
BtsIMutI	CAGTG	3 cut(s)	153, 703, 744
Cac8I	GCNNGC	1 cut(s)	972
CaiI	CAGNNNCTG	1 cut(s)	643
CfoI	GCGC	3 cut(s)	758, 958, 970
CseI	GACGC	1 cut(s)	966
Csp6I	GTAC	5 cut(s)	195, 255, 283, 327, 456
CviAII	CATG	6 cut(s)	136, 345, 462, 901, 932, 994
CviQI	GTAC	5 cut(s)	195, 255, 283, 327, 456
DdeI	CTNAG	3 cut(s)	77, 156, 579
DpnI	GATC	5 cut(s)	51, 74, 683, 762, 817
DpnII	GATC	5 cut(s)	49, 72, 681, 760, 815
EciI	GGCGGA	1 cut(s)	951
Ecl136II	GAGCTC	1 cut(s)	823
Eco130I	CCWWGG	2 cut(s)	811, 993
Eco24I	GRGCYC	1 cut(s)	825
Eco31I	GGTCTC	2 cut(s)	681, 780
Eco47III	AGCGCT	1 cut(s)	957
Eco53kI	GAGCTC	1 cut(s)	823
Eco57I	CTGAAG	2 cut(s)	285, 456
EcoICRI	GAGCTC	1 cut(s)	823
EcoRI	GAATTC	1 cut(s)	890
EcoT14I	CCWWGG	2 cut(s)	811, 993
EcoT38I	GRGCYC	1 cut(s)	825
ErhI	CCWWGG	2 cut(s)	811, 993
Esp3I	CGTCTC	2 cut(s)	617, 898
FaeI	CATG	6 cut(s)	139, 348, 465, 904, 935, 997
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	6 cut(s)	135, 344, 461, 900, 931, 993
FauI	CCCGC	1 cut(s)	609
FblI	GTMKAC	1 cut(s)	575
Fnu4HI	GCNGC	7 cut(s)	39, 535, 538, 671, 754, 975, 988
FokI	GGATG	4 cut(s)	414, 701, 745, 758
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	7 cut(s)	39, 535, 538, 671, 754, 975, 988
FspBI	CTAG	5 cut(s)	44, 267, 543, 959, 984
GlaI	GCGC	3 cut(s)	757, 957, 969
GluI	GCNGC	7 cut(s)	39, 535, 538, 671, 754, 975, 988
GsaI	CCCAGC	1 cut(s)	615
HaeII	RGCGCY	2 cut(s)	959, 971
HaeIII	GGCC	1 cut(s)	810
HgaI	GACGC	1 cut(s)	966
HhaI	GCGC	3 cut(s)	758, 958, 970
Hin1I	GRCGYC	2 cut(s)	626, 977
Hin1II	CATG	6 cut(s)	139, 348, 465, 904, 935, 997
Hin6I	GCGC	3 cut(s)	756, 956, 968
HinP1I	GCGC	3 cut(s)	756, 956, 968
HindIII	AAGCTT	2 cut(s)	1006, 1012
HinfI	GANTC	4 cut(s)	640, 715, 864, 1000
HphI	GGTGA	1 cut(s)	1009
Hpy166II	GTNNAC	2 cut(s)	576, 662
Hpy188I	TCNGA	8 cut(s)	304, 396, 436, 645, 681, 726, 797, 820
Hpy188III	TCNNGA	4 cut(s)	44, 273, 887, 895
Hpy8I	GTNNAC	2 cut(s)	576, 662
Hpy99I	CGWCG	2 cut(s)	797, 982
HpyAV	CCTTC	3 cut(s)	168, 253, 580
HpyCH4III	ACNGT	2 cut(s)	194, 698
HpyCH4IV	ACGT	1 cut(s)	626
HpyCH4V	TGCA	7 cut(s)	168, 366, 465, 562, 655, 662, 753
HpyF10VI	GCNNNNNNNGC	4 cut(s)	534, 568, 843, 974
HpyF3I	CTNAG	3 cut(s)	77, 156, 579
HpySE526I	ACGT	1 cut(s)	626
Hsp92I	GRCGYC	2 cut(s)	626, 977
Hsp92II	CATG	6 cut(s)	139, 348, 465, 904, 935, 997
HspAI	GCGC	3 cut(s)	756, 956, 968
Kzo9I	GATC	5 cut(s)	49, 72, 681, 760, 815
LmnI	GCTCC	4 cut(s)	726, 797, 938, 995
Lsp1109I	GCAGC	5 cut(s)	25, 521, 682, 765, 974
LweI	GCATC	5 cut(s)	266, 392, 571, 636, 664
MaeI	CTAG	5 cut(s)	44, 267, 543, 959, 984
MaeII	ACGT	1 cut(s)	626
MaeIII	GTNAC	2 cut(s)	425, 997
MalI	GATC	5 cut(s)	51, 74, 683, 762, 817
MboI	GATC	5 cut(s)	49, 72, 681, 760, 815
MboII	GAAGA	6 cut(s)	32, 183, 449, 557, 595, 713
MflI	RGATCY	2 cut(s)	72, 760
MhlI	GDGCHC	4 cut(s)	559, 664, 696, 825
MluCI	AATT	4 cut(s)	220, 292, 310, 890
MlyI	GAGTC	2 cut(s)	724, 994
MmeI	TCCRAC	3 cut(s)	723, 775, 882
MnlI	CCTC	8 cut(s)	38, 40, 151, 155, 268, 271, 660, 888
MseI	TTAA	3 cut(s)	291, 1010, 1016
MspA1I	CMGCKG	1 cut(s)	673
MspCI	CTTAAG	1 cut(s)	1009
MwoI	GCNNNNNNNGC	4 cut(s)	534, 568, 843, 974
NcoI	CCATGG	1 cut(s)	993
NdeII	GATC	5 cut(s)	49, 72, 681, 760, 815
NlaIII	CATG	6 cut(s)	139, 348, 465, 904, 935, 997
NlaIV	GGNNCC	3 cut(s)	74, 241, 799
NmeAIII	GCCGAG	1 cut(s)	786
NmuCI	GTSAC	2 cut(s)	425, 997
NspI	RCATGY	3 cut(s)	139, 348, 465
PciI	ACATGT	2 cut(s)	135, 344
PfeI	GAWTC	2 cut(s)	640, 864
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	7 cut(s)	40, 536, 539, 672, 755, 976, 989
PleI	GAGTC	2 cut(s)	723, 994
PpsI	GAGTC	2 cut(s)	723, 994
PscI	ACATGT	2 cut(s)	135, 344
Psp124BI	GAGCTC	1 cut(s)	825
PspFI	CCCAGC	1 cut(s)	611
PspN4I	GGNNCC	3 cut(s)	74, 241, 799
PstNI	CAGNNNCTG	1 cut(s)	643
PsuI	RGATCY	2 cut(s)	72, 760
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	5 cut(s)	196, 256, 284, 328, 457
RsaNI	GTAC	5 cut(s)	195, 255, 283, 327, 456
SacI	GAGCTC	1 cut(s)	825
SaqAI	TTAA	3 cut(s)	291, 1010, 1016
SatI	GCNGC	7 cut(s)	39, 535, 538, 671, 754, 975, 988
Sau3AI	GATC	5 cut(s)	49, 72, 681, 760, 815
ScaI	AGTACT	1 cut(s)	328
SchI	GAGTC	2 cut(s)	724, 994
SduI	GDGCHC	4 cut(s)	559, 664, 696, 825
SfaNI	GCATC	5 cut(s)	266, 392, 571, 636, 664
SmlI	CTYRAG	1 cut(s)	1009
SmoI	CTYRAG	1 cut(s)	1009
Sse9I	AATT	4 cut(s)	220, 292, 310, 890
SsiI	CCGC	7 cut(s)	537, 616, 649, 673, 769, 936, 974
SspMI	CTAG	5 cut(s)	44, 267, 543, 959, 984
SstI	GAGCTC	1 cut(s)	825
StyI	CCWWGG	2 cut(s)	811, 993
TaaI	ACNGT	2 cut(s)	194, 698
TaiI	ACGT	1 cut(s)	629
TasI	AATT	4 cut(s)	220, 292, 310, 890
TatI	WGTACW	2 cut(s)	194, 326
TauI	GCSGC	2 cut(s)	540, 977
TfiI	GAWTC	2 cut(s)	640, 864
Tru1I	TTAA	3 cut(s)	291, 1010, 1016
Tru9I	TTAA	3 cut(s)	291, 1010, 1016
TscAI	CASTG	3 cut(s)	160, 703, 744
TseFI	GTSAC	2 cut(s)	425, 997
TseI	GCWGC	5 cut(s)	38, 534, 670, 753, 987
Tsp45I	GTSAC	2 cut(s)	425, 997
TspDTI	ATGAA	3 cut(s)	33, 75, 920
TspRI	CASTG	3 cut(s)	160, 703, 744
Tth111I	GACNNNGTC	1 cut(s)	113
Vha464I	CTTAAG	1 cut(s)	1009
VneI	GTGCAC	1 cut(s)	660
XapI	RAATTY	1 cut(s)	890
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	3 cut(s)	139, 348, 465
XmiI	GTMKAC	1 cut(s)	575
XspI	CTAG	5 cut(s)	44, 267, 543, 959, 984
ZraI	GACGTC	1 cut(s)	627
ZrmI	AGTACT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.