Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0017440

Physical Location & Seq

Genomic Coordinates Forward (+)

20050806 .. 20051923

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G016060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTCAAACTTGTAGTGGTGCTGAAAACACTGGGGACTCACCAAAATCAGGAGACATTCACAATTCTACAAGTAGCTTAGTTTCTTCTTCTGGGAAATTCACTTTTGAATTCTGGACAAATGGTACCATCTCCAGCTACCTAGTTACACTGCACGGTAATGGCATGAAATTAGGGGTGAACCATAAGACTGGCAAAATTTGGTCAATTACATCATGGAAAACTCACACCAACCCAGAGATGGGAATTTTCAACCTTGATTGGGACCCAAATGGACACCAATTGGAGCTTAGAAGACGTGGGAGGTACAACTTCAGCATGGTTTCAAATGAGTATGAAGACTACCTCACTTACGCTGCTCTAGAGGATCAAACTAATGAACCAGAATGGATCCTAAGATTTCAGGGGAGACTTTATGATAATGATGACCAAGTCGGTATTGTAGAAGCAGACATGTGTGATGGGTATAACACTGATAGAGGGTGCAGAAGAAGGGACCGGACACCAGACTGTACATCAGGGTTTGAGTTTAGAAATAATTTTGAGCAAAAAAATGGTTCCTTCAAACCAAGTACCTCCTCGTCTAGGTCAAGATGCCCGTACTGGCTTAATTTTGCTTCAGATAAAAATTACAGCAGTAGTAGTACTGATTGTCAGGCTACATGTTGGCAAGATTGTGATTGCATTGGATATGACTTTCTATTTGATAATATGACTGGATGCCGATTTTGGAGTGTAGATTGTCACTTCTCTGAAGACCTTACTGGTACGGTACTGGTTTTATGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

263

Amino Acids

30.02

Weight (kDa)

4.96

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024981 RchiOBHm_Chr5g0025191 RchiOBHm_Chr5g0025411
rosa_multiflora	Rmu_sc0003576.1_g000019 Rmu_sc0006827.1_g000018
rosa_roxburghii	Rroxscaffold_1G00054470
rosa_rugosa	Rorug05G0085000.1
rosa_samantha	Rh5AG177100 Rh5BG175100 Rh5BG175200 Rh5CG192700 Rh5CG194500
rosa_wichuraiana	Rw5G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AclWI	GGATC	3 cut(s)	375, 385, 398
AcsI	RAATTY	4 cut(s)	98, 110, 198, 246
AcuI	CTGAAG	3 cut(s)	298, 603, 774
AfaI	GTAC	8 cut(s)	127, 308, 514, 574, 602, 646, 769, 774
AfiI	CCNNNNNNNGG	5 cut(s)	50, 241, 242, 262, 585
AflIII	ACRYGT	2 cut(s)	453, 662
AgsI	TTSAA	4 cut(s)	110, 253, 327, 565
AjiI	CACGTC	1 cut(s)	299
AluBI	AGCT	3 cut(s)	78, 138, 289
AluI	AGCT	3 cut(s)	78, 138, 289
Alw26I	GTCTC	2 cut(s)	48, 403
AlwI	GGATC	3 cut(s)	375, 385, 398
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	4 cut(s)	98, 110, 198, 246
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
Asp718I	GGTACC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	265, 496
AsuHPI	GGTGA	2 cut(s)	33, 190
AvaII	GGWCC	2 cut(s)	265, 496
BamHI	GGATCC	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	125
BbsI	GAAGAC	3 cut(s)	301, 345, 762
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	3 cut(s)	137, 235, 455
BcoDI	GTCTC	2 cut(s)	48, 403
BfaI	CTAG	3 cut(s)	143, 362, 585
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
BmcAI	AGTACT	1 cut(s)	646
Bme18I	GGWCC	2 cut(s)	265, 496
BmgBI	CACGTC	1 cut(s)	299
BmgT120I	GGNCC	2 cut(s)	265, 496
BmiI	GGNNCC	6 cut(s)	127, 266, 267, 392, 497, 559
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	2 cut(s)	584, 710
BmuI	ACTGGG	1 cut(s)	42
BpiI	GAAGAC	3 cut(s)	301, 345, 762
BpmI	CTGGAG	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 241, 242, 262, 585
Bse1I	ACTGG	6 cut(s)	37, 196, 608, 721, 769, 780
BseGI	GGATG	1 cut(s)	725
BseLI	CCNNNNNNNGG	5 cut(s)	50, 241, 242, 262, 585
BseNI	ACTGG	6 cut(s)	37, 196, 608, 721, 769, 780
BseRI	GAGGAG	1 cut(s)	568
BseXI	GCAGC	1 cut(s)	343
BsgI	GTGCAG	2 cut(s)	137, 505
BshNI	GGYRCC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	499
BslFI	GGGAC	3 cut(s)	50, 278, 509
BslI	CCNNNNNNNGG	5 cut(s)	50, 241, 242, 262, 585
BsmAI	GTCTC	2 cut(s)	48, 403
BsmFI	GGGAC	3 cut(s)	50, 278, 509
Bsp1407I	TGTACA	1 cut(s)	512
Bsp143I	GATC	2 cut(s)	367, 390
BspLI	GGNNCC	6 cut(s)	127, 266, 267, 392, 497, 559
BspPI	GGATC	3 cut(s)	375, 385, 398
BspT107I	GGYRCC	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	512
BsrI	ACTGG	6 cut(s)	37, 196, 608, 721, 769, 780
BssMI	GATC	2 cut(s)	367, 390
Bst4CI	ACNGT	3 cut(s)	158, 512, 772
BstAUI	TGTACA	1 cut(s)	512
BstDEI	CTNAG	3 cut(s)	79, 290, 395
BstENI	CCTNNNNNAGG	1 cut(s)	583
BstF5I	GGATG	1 cut(s)	725
BstKTI	GATC	2 cut(s)	370, 393
BstMAI	GTCTC	2 cut(s)	48, 403
BstMBI	GATC	2 cut(s)	367, 390
BstNSI	RCATGY	2 cut(s)	457, 666
BstV1I	GCAGC	1 cut(s)	343
BstV2I	GAAGAC	3 cut(s)	301, 345, 762
BstX2I	RGATCY	1 cut(s)	390
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	390
BtrI	CACGTC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	725
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	3 cut(s)	30, 149, 471
Cfr13I	GGNCC	2 cut(s)	265, 496
Csp6I	GTAC	8 cut(s)	126, 307, 513, 573, 601, 645, 768, 773
CviAII	CATG	5 cut(s)	166, 216, 319, 454, 663
CviJI	RGCY	6 cut(s)	5, 78, 138, 289, 607, 659
CviKI_1	RGCY	6 cut(s)	5, 78, 138, 289, 607, 659
CviQI	GTAC	8 cut(s)	126, 307, 513, 573, 601, 645, 768, 773
DdeI	CTNAG	3 cut(s)	79, 290, 395
DpnI	GATC	2 cut(s)	369, 392
DpnII	GATC	2 cut(s)	367, 390
Eco47I	GGWCC	2 cut(s)	265, 496
Eco57I	CTGAAG	3 cut(s)	298, 603, 774
EcoNI	CCTNNNNNAGG	1 cut(s)	583
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	110
FaeI	CATG	5 cut(s)	169, 219, 322, 457, 666
FaqI	GGGAC	3 cut(s)	50, 278, 509
FatI	CATG	5 cut(s)	165, 215, 318, 453, 662
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	1 cut(s)	732
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	3 cut(s)	143, 362, 585
GluI	GCNGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	118
HapII	CCGG	1 cut(s)	499
Hin1II	CATG	5 cut(s)	169, 219, 322, 457, 666
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	499
HphI	GGTGA	2 cut(s)	33, 190
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	622, 754
Hpy188III	TCNNGA	4 cut(s)	51, 115, 362, 591
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	2 cut(s)	486, 571
HpyCH4III	ACNGT	3 cut(s)	158, 512, 772
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	154, 486, 684
HpyF3I	CTNAG	3 cut(s)	79, 290, 395
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	5 cut(s)	169, 219, 322, 457, 666
KflI	GGGWCCC	1 cut(s)	265
KpnI	GGTACC	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	367, 390
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	2 cut(s)	584, 710
MaeI	CTAG	3 cut(s)	143, 362, 585
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	2 cut(s)	145, 743
MalI	GATC	2 cut(s)	369, 392
MboI	GATC	2 cut(s)	367, 390
MboII	GAAGA	6 cut(s)	78, 81, 306, 350, 501, 767
MfeI	CAATTG	1 cut(s)	281
MflI	RGATCY	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	6 cut(s)	297, 356, 358, 473, 586, 589
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	159
MspI	CCGG	1 cut(s)	499
MunI	CAATTG	1 cut(s)	281
NdeII	GATC	2 cut(s)	367, 390
NlaIII	CATG	5 cut(s)	169, 219, 322, 457, 666
NlaIV	GGNNCC	6 cut(s)	127, 266, 267, 392, 497, 559
NmuCI	GTSAC	1 cut(s)	743
NspI	RCATGY	2 cut(s)	457, 666
PciI	ACATGT	2 cut(s)	453, 662
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PpuMI	RGGWCCY	1 cut(s)	265
PscI	ACATGT	2 cut(s)	453, 662
Psp5II	RGGWCCY	1 cut(s)	265
PspN4I	GGNNCC	6 cut(s)	127, 266, 267, 392, 497, 559
PspPI	GGNCC	2 cut(s)	265, 496
PspPPI	RGGWCCY	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	390
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	8 cut(s)	127, 308, 514, 574, 602, 646, 769, 774
RsaNI	GTAC	8 cut(s)	126, 307, 513, 573, 601, 645, 768, 773
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	2 cut(s)	367, 390
Sau96I	GGNCC	2 cut(s)	265, 496
ScaI	AGTACT	1 cut(s)	646
SchI	GAGTC	1 cut(s)	32
SfaNI	GCATC	2 cut(s)	584, 710
SinI	GGWCC	2 cut(s)	265, 496
SmiMI	CAYNNNNRTG	1 cut(s)	159
SspMI	CTAG	3 cut(s)	143, 362, 585
TaaI	ACNGT	3 cut(s)	158, 512, 772
TaiI	ACGT	1 cut(s)	301
TatI	WGTACW	2 cut(s)	512, 644
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	3 cut(s)	37, 156, 478
TseFI	GTSAC	1 cut(s)	743
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	743
TspDTI	ATGAA	3 cut(s)	182, 351, 393
TspRI	CASTG	3 cut(s)	37, 156, 478
Tth111I	GACNNNGTC	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	265, 496
XagI	CCTNNNNNAGG	1 cut(s)	583
XapI	RAATTY	4 cut(s)	98, 110, 198, 246
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	2 cut(s)	457, 666
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XspI	CTAG	3 cut(s)	143, 362, 585
ZrmI	AGTACT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.