Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003576.1

Orthogroup ID

OG0017440

Physical Location & Seq

Genomic Coordinates Reverse (-)

75291 .. 76796

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003576.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgggaattttcgaccttgattgggacccaactggacaccaattggagcttagaagacgtggggtcgtttattggagaagtggaaaatttacaagcaatagttttgagttcattttaccttatcaaaggcagaggaacaacttcagcatggtttcaaatgagtatgaagactacctcacttacgctgctctagaggatcaaactaatgaaccagaatggatcctaagatttcagaggagactttatgataatgatgagttgatcggtattgtagaagcagacatgtgtggtgggtctaacactgagggagggtgccagagaagggaccggacaccagactgtaagcacaggacgaagatttttcagaaagaactacttagcttcatgagatctaatagaccaactgctgtggatggacttcaaattgacggaaagatggggcaggatttaagtgtatttagctatgcatctgtattggctgccacatgcaacttctctgaagaaaacaaactgggacaggagggctttggaccggtttacaagggaaaactggtgactgggagaagaaatagctgtgaagaagctttcaaaatcttcagggcaaggcgtgtcagagttcaagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

208

Amino Acids

24.17

Weight (kDa)

6.76

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024981 RchiOBHm_Chr5g0025191 RchiOBHm_Chr5g0025411
rosa_multiflora	Rmu_sc0003576.1_g000019 Rmu_sc0006827.1_g000018
rosa_roxburghii	Rroxscaffold_1G00054470
rosa_rugosa	Rorug05G0085000.1
rosa_samantha	Rh5AG177100 Rh5BG175100 Rh5BG175200 Rh5CG192700 Rh5CG194500
rosa_wichuraiana	Rw5G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	312
AclWI	GGATC	3 cut(s)	204, 214, 227
AcsI	RAATTY	2 cut(s)	6, 86
AcuI	CTGAAG	3 cut(s)	127, 519, 580
AfiI	CCNNNNNNNGG	2 cut(s)	22, 322
AflIII	ACRYGT	1 cut(s)	282
AgeI	ACCGGT	1 cut(s)	532
AgsI	TTSAA	4 cut(s)	156, 422, 589, 620
AhdI	GACNNNNNGTC	1 cut(s)	62
AjiI	CACGTC	1 cut(s)	59
AluBI	AGCT	5 cut(s)	49, 381, 462, 573, 584
AluI	AGCT	5 cut(s)	49, 381, 462, 573, 584
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	3 cut(s)	204, 214, 227
ApeKI	GCWGC	2 cut(s)	185, 479
ApoI	RAATTY	2 cut(s)	6, 86
AsiGI	ACCGGT	1 cut(s)	532
Asp700I	GAANNNNTTC	1 cut(s)	140
AspS9I	GGNCC	3 cut(s)	25, 325, 530
AsuHPI	GGTGA	1 cut(s)	565
AvaII	GGWCC	3 cut(s)	25, 325, 530
BamHI	GGATCC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	312
BbsI	GAAGAC	2 cut(s)	61, 174
BbvI	GCAGC	2 cut(s)	172, 466
BccI	CCATC	2 cut(s)	407, 430
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	191
BglII	AGATCT	1 cut(s)	389
BisI	GCNGC	2 cut(s)	186, 480
BlsI	GCNGC	2 cut(s)	187, 481
Bme18I	GGWCC	3 cut(s)	25, 325, 530
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	59
BmgT120I	GGNCC	3 cut(s)	25, 325, 530
BmiI	GGNNCC	5 cut(s)	26, 27, 221, 314, 326
BmrI	ACTGGG	2 cut(s)	521, 567
BmsI	GCATC	1 cut(s)	476
BmuI	ACTGGG	2 cut(s)	521, 567
BpiI	GAAGAC	2 cut(s)	61, 174
BsaWI	WCCGGW	2 cut(s)	327, 532
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 322
Bse118I	RCCGGY	1 cut(s)	532
Bse1I	ACTGG	4 cut(s)	37, 516, 555, 562
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	22, 322
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	4 cut(s)	37, 516, 555, 562
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	172, 466
BshNI	GGYRCC	1 cut(s)	312
BshTI	ACCGGT	1 cut(s)	532
BsiSI	CCGG	2 cut(s)	328, 533
BslFI	GGGAC	3 cut(s)	38, 338, 528
BslI	CCNNNNNNNGG	2 cut(s)	22, 322
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	3 cut(s)	38, 338, 528
Bsp143I	GATC	4 cut(s)	196, 219, 261, 389
BspCNI	CTCAG	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	5 cut(s)	26, 27, 221, 314, 326
BspPI	GGATC	3 cut(s)	204, 214, 227
BspT107I	GGYRCC	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	532
BsrI	ACTGG	4 cut(s)	37, 516, 555, 562
BssAI	RCCGGY	1 cut(s)	532
BssMI	GATC	4 cut(s)	196, 219, 261, 389
Bst4CI	ACNGT	1 cut(s)	341
BstDEI	CTNAG	4 cut(s)	50, 224, 303, 377
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	4 cut(s)	199, 222, 264, 392
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	4 cut(s)	196, 219, 261, 389
BstNSI	RCATGY	2 cut(s)	286, 489
BstV1I	GCAGC	2 cut(s)	172, 466
BstV2I	GAAGAC	2 cut(s)	61, 174
BstX2I	RGATCY	2 cut(s)	219, 389
BstYI	RGATCY	2 cut(s)	219, 389
BtrI	CACGTC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	300
CciI	TCATGA	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	532
Cfr13I	GGNCC	3 cut(s)	25, 325, 530
CspAI	ACCGGT	1 cut(s)	532
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviAII	CATG	4 cut(s)	148, 283, 385, 486
CviJI	RGCY	7 cut(s)	49, 381, 462, 479, 525, 573, 584
CviKI_1	RGCY	7 cut(s)	49, 381, 462, 479, 525, 573, 584
DdeI	CTNAG	4 cut(s)	50, 224, 303, 377
DpnI	GATC	4 cut(s)	198, 221, 263, 391
DpnII	GATC	4 cut(s)	196, 219, 261, 389
DriI	GACNNNNNGTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	62
Eco47I	GGWCC	3 cut(s)	25, 325, 530
Eco57I	CTGAAG	3 cut(s)	127, 519, 580
EcoO109I	RGGNCCY	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	469
FaeI	CATG	4 cut(s)	151, 286, 388, 489
FaiI	YATR	7 cut(s)	149, 165, 246, 284, 386, 465, 487
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	3 cut(s)	38, 338, 528
FatI	CATG	4 cut(s)	147, 282, 384, 485
Fnu4HI	GCNGC	2 cut(s)	186, 480
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	2 cut(s)	186, 480
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	2 cut(s)	186, 480
HapII	CCGG	2 cut(s)	328, 533
Hin1II	CATG	4 cut(s)	151, 286, 388, 489
HindIII	AAGCTT	1 cut(s)	582
HpaII	CCGG	2 cut(s)	328, 533
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	4 cut(s)	234, 366, 499, 614
Hpy188III	TCNNGA	3 cut(s)	191, 385, 620
Hpy8I	GTNNAC	1 cut(s)	538
HpyAV	CCTTC	1 cut(s)	315
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	467, 489
HpyF3I	CTNAG	4 cut(s)	50, 224, 303, 377
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	4 cut(s)	151, 286, 388, 489
KflI	GGGWCCC	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	196, 219, 261, 389
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	2 cut(s)	172, 466
LweI	GCATC	1 cut(s)	476
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	4 cut(s)	198, 221, 263, 391
MboI	GATC	4 cut(s)	196, 219, 261, 389
MboII	GAAGA	7 cut(s)	66, 179, 367, 512, 576, 586, 590
MfeI	CAATTG	1 cut(s)	41
MflI	RGATCY	2 cut(s)	219, 389
MluCI	AATT	4 cut(s)	6, 41, 86, 423
MnlI	CCTC	7 cut(s)	126, 185, 187, 228, 298, 302, 514
Mph1103I	ATGCAT	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	1 cut(s)	449
MspI	CCGG	2 cut(s)	328, 533
MunI	CAATTG	1 cut(s)	41
NdeII	GATC	4 cut(s)	196, 219, 261, 389
NlaIII	CATG	4 cut(s)	151, 286, 388, 489
NlaIV	GGNNCC	5 cut(s)	26, 27, 221, 314, 326
NmuCI	GTSAC	1 cut(s)	553
NsiI	ATGCAT	1 cut(s)	469
NspI	RCATGY	2 cut(s)	286, 489
PagI	TCATGA	1 cut(s)	384
PciI	ACATGT	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	140
PinAI	ACCGGT	1 cut(s)	532
PkrI	GCNGC	2 cut(s)	187, 481
PpuMI	RGGWCCY	1 cut(s)	25
PscI	ACATGT	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	25
PspN4I	GGNNCC	5 cut(s)	26, 27, 221, 314, 326
PspPI	GGNCC	3 cut(s)	25, 325, 530
PspPPI	RGGWCCY	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	219, 389
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	2 cut(s)	186, 480
Sau3AI	GATC	4 cut(s)	196, 219, 261, 389
Sau96I	GGNCC	3 cut(s)	25, 325, 530
SetI	ASST	9 cut(s)	18, 51, 61, 121, 177, 383, 464, 575, 586
SfaNI	GCATC	1 cut(s)	476
SinI	GGWCC	3 cut(s)	25, 325, 530
Sse9I	AATT	4 cut(s)	6, 41, 86, 423
SspMI	CTAG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	12
TasI	AATT	4 cut(s)	6, 41, 86, 423
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	2 cut(s)	185, 479
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	4 cut(s)	100, 180, 222, 373
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	3 cut(s)	25, 325, 530
XapI	RAATTY	2 cut(s)	6, 86
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	2 cut(s)	286, 489
XmnI	GAANNNNTTC	1 cut(s)	140
XspI	CTAG	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.