Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0017440

Physical Location & Seq

Genomic Coordinates Forward (+)

18486627 .. 18486864

Gene Structure 238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG175200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 238 bp

ATGGTTTCAAATGAGTCTGAAGACTACCTCACTTACGCTGCTCTAGAGGATCAAACTAATGAACCAGGATGGATCCTAAGATTTCAGGGGAGACTTTATGATAATGATGACCAAGTCGGTCTTGTAGAAGCAGACATGTGTGATGGGTATAACACTGATGGAGGGTGCCAGAGAAGGGACCGGACACAAGACTGTACAACAGGGTTTGAGTTTAGCAATAATTTTGAGCAAAAAAATG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

79

Amino Acids

9.1

Weight (kDa)

4.05

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024981 RchiOBHm_Chr5g0025191 RchiOBHm_Chr5g0025411
rosa_multiflora	Rmu_sc0003576.1_g000019 Rmu_sc0006827.1_g000018
rosa_roxburghii	Rroxscaffold_1G00054470
rosa_rugosa	Rorug05G0085000.1
rosa_samantha	Rh5AG177100 Rh5BG175100 Rh5BG175200 Rh5CG192700 Rh5CG194500
rosa_wichuraiana	Rw5G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	165
AclWI	GGATC	3 cut(s)	57, 67, 80
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	175
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	9
AjnI	CCWGG	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	3 cut(s)	57, 67, 80
ApeKI	GCWGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	178
BamHI	GGATCC	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	3 cut(s)	63, 137, 152
BciT130I	CCWGG	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	3 cut(s)	74, 167, 179
BmrFI	CCNGG	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	25
BshNI	GGYRCC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	49, 72
BspLI	GGNNCC	3 cut(s)	74, 167, 179
BspPI	GGATC	3 cut(s)	57, 67, 80
BspT107I	GGYRCC	1 cut(s)	165
BsrGI	TGTACA	1 cut(s)	194
BssMI	GATC	2 cut(s)	49, 72
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	74
BstKTI	GATC	2 cut(s)	52, 75
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	2 cut(s)	49, 72
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	1 cut(s)	136
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	51, 74
DpnII	GATC	2 cut(s)	49, 72
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	64
FaeI	CATG	1 cut(s)	139
FaiI	YATR	3 cut(s)	99, 137, 150
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	1 cut(s)	39
HapII	CCGG	1 cut(s)	181
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	49, 72
LpnPI	CCDG	6 cut(s)	51, 71, 78, 182, 186, 194
Lsp1109I	GCAGC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	44
MalI	GATC	2 cut(s)	51, 74
MboI	GATC	2 cut(s)	49, 72
MboII	GAAGA	1 cut(s)	32
MflI	RGATCY	1 cut(s)	72
MluCI	AATT	1 cut(s)	220
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	3 cut(s)	38, 40, 155
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
NdeII	GATC	2 cut(s)	49, 72
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	3 cut(s)	74, 167, 179
NspI	RCATGY	1 cut(s)	139
PciI	ACATGT	1 cut(s)	135
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PscI	ACATGT	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	3 cut(s)	74, 167, 179
PspPI	GGNCC	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	72
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	2 cut(s)	49, 72
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	1 cut(s)	30
SinI	GGWCC	1 cut(s)	178
Sse9I	AATT	1 cut(s)	220
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	194
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	1 cut(s)	220
TatI	WGTACW	1 cut(s)	194
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	160
Tth111I	GACNNNGTC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	178
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	1 cut(s)	139
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.