Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0017440

Physical Location & Seq

Genomic Coordinates Forward (+)

19182116 .. 19184606

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG192700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAAATTAGGGGTGAACCATAAGACTGGCAAAATTTGGTCAATTACATCATGGAAAACTCACACCAACCCAGAGATGGGAATTTTCAACCTTGATTGGGACCCAAATGGACACCAATTGGAGCTTAGAAGACGTGGGGTGGTTTATTGGAGAAGTGGAAAATTTACAAGCAATAGTTTTGAGTTCATTTTGCCTTATCAAAGGCAGAGGTACAACTTCAGCATGGTTTCAAATGAGTATGAAGACTACCTCACTTACGCTGCTCTAGAGGATCAAACTAATGAACCAGAATGGATCCTAAGATTTCAGGGGAGACTTTATGATAATGATGACCAAGTCGGTATTGTAGAAGCAGACATGTGTGGTGCGTATAACACTGAGGGAGGGTGCCAGAGAAGGGACCGGACACCAGACTGTACAACAGGGTTTGAGTTTAGCAATAATTTTGAGGAAAAAAATGGTTCCTTCAAACCAAGTACTTCCTCCTTGTCTAGTTCAAGATGCCCGTACTGGCTTAATTTTGCTTCAGATAAAAATTACAGCAGTAGTAGTACAGATTGTCAGGCTACATGTTGGCAAGATTGTGATTGCATTGGATATGACTTTCTATTTGATAATCAGACTGGATGCCGATTTTGGAGTGTAGATTGTCCCTTCTCTGAAGACCTTACTGGTTCGGCTACTACAACTGGTTTTGTAGTTATGACAAGACCACCAATGATAAGAACATCATCATCATCTCGCAAAAAGGGCATGGAGATTATGGAACGAAGGTACATGGCTAGAACTAATGGATCCCAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

268

Amino Acids

30.98

Weight (kDa)

5.48

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024981 RchiOBHm_Chr5g0025191 RchiOBHm_Chr5g0025411
rosa_multiflora	Rmu_sc0003576.1_g000019 Rmu_sc0006827.1_g000018
rosa_roxburghii	Rroxscaffold_1G00054470
rosa_rugosa	Rorug05G0085000.1
rosa_samantha	Rh5AG177100 Rh5BG175100 Rh5BG175200 Rh5CG192700 Rh5CG194500
rosa_wichuraiana	Rw5G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	387
AclWI	GGATC	5 cut(s)	279, 289, 302, 789, 802
AcsI	RAATTY	3 cut(s)	33, 81, 161
AcuI	CTGAAG	3 cut(s)	202, 510, 681
AfaI	GTAC	6 cut(s)	212, 418, 478, 509, 553, 776
AfiI	CCNNNNNNNGG	4 cut(s)	76, 77, 97, 397
AflIII	ACRYGT	2 cut(s)	357, 569
AgsI	TTSAA	4 cut(s)	88, 231, 469, 498
AjiI	CACGTC	1 cut(s)	134
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	5 cut(s)	279, 289, 302, 789, 802
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	3 cut(s)	33, 81, 161
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
AspS9I	GGNCC	2 cut(s)	100, 400
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	100, 400
BamHI	GGATCC	2 cut(s)	294, 794
BanI	GGYRCC	1 cut(s)	387
BbsI	GAAGAC	3 cut(s)	136, 249, 669
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	3 cut(s)	266, 492, 783
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
BmcAI	AGTACT	1 cut(s)	478
Bme18I	GGWCC	2 cut(s)	100, 400
BmgBI	CACGTC	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	100, 400
BmiI	GGNNCC	7 cut(s)	101, 102, 296, 389, 401, 463, 796
BmsI	GCATC	2 cut(s)	491, 617
BpiI	GAAGAC	3 cut(s)	136, 249, 669
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 77, 97, 397
Bse1I	ACTGG	5 cut(s)	31, 515, 628, 676, 694
BseGI	GGATG	1 cut(s)	632
BseLI	CCNNNNNNNGG	4 cut(s)	76, 77, 97, 397
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	5 cut(s)	31, 515, 628, 676, 694
BseXI	GCAGC	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	403
BslFI	GGGAC	3 cut(s)	113, 413, 636
BslI	CCNNNNNNNGG	4 cut(s)	76, 77, 97, 397
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	3 cut(s)	113, 413, 636
Bsp1407I	TGTACA	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	271, 294, 794
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	7 cut(s)	101, 102, 296, 389, 401, 463, 796
BspPI	GGATC	5 cut(s)	279, 289, 302, 789, 802
BspT107I	GGYRCC	1 cut(s)	387
BsrGI	TGTACA	1 cut(s)	416
BsrI	ACTGG	5 cut(s)	31, 515, 628, 676, 694
BssMI	GATC	3 cut(s)	271, 294, 794
Bst4CI	ACNGT	1 cut(s)	416
BstAUI	TGTACA	1 cut(s)	416
BstDEI	CTNAG	3 cut(s)	125, 299, 378
BstF5I	GGATG	1 cut(s)	632
BstKTI	GATC	3 cut(s)	274, 297, 797
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	3 cut(s)	271, 294, 794
BstMWI	GCNNNNNNNGC	1 cut(s)	750
BstNSI	RCATGY	2 cut(s)	361, 573
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	3 cut(s)	136, 249, 669
BstX2I	RGATCY	2 cut(s)	294, 794
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	2 cut(s)	294, 794
BtrI	CACGTC	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	632
BtsIMutI	CAGTG	1 cut(s)	375
Cfr13I	GGNCC	2 cut(s)	100, 400
Csp6I	GTAC	6 cut(s)	211, 417, 477, 508, 552, 775
CviAII	CATG	6 cut(s)	51, 223, 358, 570, 754, 778
CviJI	RGCY	5 cut(s)	124, 514, 566, 680, 782
CviKI_1	RGCY	5 cut(s)	124, 514, 566, 680, 782
CviQI	GTAC	6 cut(s)	211, 417, 477, 508, 552, 775
DdeI	CTNAG	3 cut(s)	125, 299, 378
DpnI	GATC	3 cut(s)	273, 296, 796
DpnII	GATC	3 cut(s)	271, 294, 794
Eco47I	GGWCC	2 cut(s)	100, 400
Eco57I	CTGAAG	3 cut(s)	202, 510, 681
EcoO109I	RGGNCCY	1 cut(s)	100
FaeI	CATG	6 cut(s)	54, 226, 361, 573, 757, 781
FaqI	GGGAC	3 cut(s)	113, 413, 636
FatI	CATG	6 cut(s)	50, 222, 357, 569, 753, 777
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	639
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	3 cut(s)	266, 492, 783
GluI	GCNGC	1 cut(s)	261
HapII	CCGG	1 cut(s)	403
Hin1II	CATG	6 cut(s)	54, 226, 361, 573, 757, 781
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	529, 621, 661
Hpy188III	TCNNGA	2 cut(s)	266, 498
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	4 cut(s)	390, 475, 664, 765
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	750
HpyF3I	CTNAG	3 cut(s)	125, 299, 378
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	6 cut(s)	54, 226, 361, 573, 757, 781
KflI	GGGWCCC	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	271, 294, 794
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	2 cut(s)	491, 617
MaeI	CTAG	3 cut(s)	266, 492, 783
MaeII	ACGT	1 cut(s)	133
MalI	GATC	3 cut(s)	273, 296, 796
MboI	GATC	3 cut(s)	271, 294, 794
MboII	GAAGA	3 cut(s)	141, 254, 674
MfeI	CAATTG	1 cut(s)	116
MflI	RGATCY	2 cut(s)	294, 794
MluCI	AATT	9 cut(s)	5, 33, 42, 81, 116, 161, 442, 517, 535
MnlI	CCTC	7 cut(s)	201, 260, 262, 373, 377, 442, 493
MseI	TTAA	1 cut(s)	516
MspI	CCGG	1 cut(s)	403
MunI	CAATTG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	750
NdeII	GATC	3 cut(s)	271, 294, 794
NlaIII	CATG	6 cut(s)	54, 226, 361, 573, 757, 781
NlaIV	GGNNCC	7 cut(s)	101, 102, 296, 389, 401, 463, 796
NspI	RCATGY	2 cut(s)	361, 573
PciI	ACATGT	2 cut(s)	357, 569
PflFI	GACNNNGTC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	262
PpuMI	RGGWCCY	1 cut(s)	100
PscI	ACATGT	2 cut(s)	357, 569
Psp5II	RGGWCCY	1 cut(s)	100
PspN4I	GGNNCC	7 cut(s)	101, 102, 296, 389, 401, 463, 796
PspPI	GGNCC	2 cut(s)	100, 400
PspPPI	RGGWCCY	1 cut(s)	100
PsuI	RGATCY	2 cut(s)	294, 794
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	6 cut(s)	212, 418, 478, 509, 553, 776
RsaNI	GTAC	6 cut(s)	211, 417, 477, 508, 552, 775
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	3 cut(s)	271, 294, 794
Sau96I	GGNCC	2 cut(s)	100, 400
ScaI	AGTACT	1 cut(s)	478
SetI	ASST	7 cut(s)	93, 126, 136, 212, 252, 669, 776
SfaNI	GCATC	2 cut(s)	491, 617
SinI	GGWCC	2 cut(s)	100, 400
Sse9I	AATT	9 cut(s)	5, 33, 42, 81, 116, 161, 442, 517, 535
SspMI	CTAG	3 cut(s)	266, 492, 783
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	1 cut(s)	136
TasI	AATT	9 cut(s)	5, 33, 42, 81, 116, 161, 442, 517, 535
TatI	WGTACW	3 cut(s)	416, 476, 551
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	4 cut(s)	17, 175, 255, 297
TspRI	CASTG	1 cut(s)	382
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	100, 400
XapI	RAATTY	3 cut(s)	33, 81, 161
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	2 cut(s)	361, 573
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XspI	CTAG	3 cut(s)	266, 492, 783
ZrmI	AGTACT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.