Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017440

Physical Location & Seq

Genomic Coordinates Reverse (-)

19151134 .. 19156903

Gene Structure 5770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30488

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAAGTTAGGTGTCAACCATAGCAATGGCCTCATTTGGTCTCTGACGTCGTGGACAACTAATTACTACCCACCACTGGGAATATTTACCCTTGATTGGGACCCAAATGGCCGCCAATTGGAAATCCGGGGACGTTGGGTGGTTTATTGGAGAAGCGGAAACTTTACTGCTAGTGGTAACAAATTTGAATTCATTTTACCAGATGAAAGGCTTCTTTTCAATTTTAGCATTGTTTCAAATAAGAATGAAGACTGCCTGACGTACACTTCTGAAAAAGATGATCAAAATGGTGAATATTTACCAGAATGGGTGATGAGTTTCTATGGGAGACTTTATAACTATAATGGAGGTGTTGATATTGCACGAGCAGATAATTGTGGAGGCTATAACACTGATGGAGGGTGCCAGAGAAGTTCCTGGCCACCTGATTGTTTGGCAGATTTTGATGATCAATATGAGCTGAAAAAGGGTTACTTTAAACCAATCACCTCAATTTTTACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

168

Amino Acids

19.39

Weight (kDa)

4.73

Isoelectric Point (pI)

21.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024981 RchiOBHm_Chr5g0025191 RchiOBHm_Chr5g0025411
rosa_multiflora	Rmu_sc0003576.1_g000019 Rmu_sc0006827.1_g000018
rosa_roxburghii	Rroxscaffold_1G00054470
rosa_rugosa	Rorug05G0085000.1
rosa_samantha	Rh5AG177100 Rh5BG175100 Rh5BG175200 Rh5CG192700 Rh5CG194500
rosa_wichuraiana	Rw5G016060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AatII	GACGTC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	402
AciI	CCGC	2 cut(s)	112, 156
AcoI	YGGCCR	2 cut(s)	109, 419
AcsI	RAATTY	2 cut(s)	182, 188
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	5 cut(s)	76, 77, 96, 97, 118
AgsI	TTSAA	3 cut(s)	188, 220, 237
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	1 cut(s)	460
AluI	AGCT	1 cut(s)	460
Alw26I	GTCTC	2 cut(s)	45, 322
AoxI	GGCC	3 cut(s)	28, 109, 419
ApoI	RAATTY	2 cut(s)	182, 188
Asp700I	GAANNNNTTC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	3 cut(s)	302, 322, 478
AvaII	GGWCC	1 cut(s)	100
BalI	TGGCCA	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	402
BauI	CACGAG	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	255
BccI	CCATC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	418
BclI	TGATCA	2 cut(s)	280, 448
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	45, 322
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	2 cut(s)	128, 418
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	3 cut(s)	101, 102, 404
BmrFI	CCNGG	2 cut(s)	128, 418
BmrI	ACTGGG	1 cut(s)	86
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 77, 96, 97, 118
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	5 cut(s)	76, 77, 96, 97, 118
BseMI	GCAATG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	30, 111, 421
BshNI	GGYRCC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	2 cut(s)	113, 144
BslI	CCNNNNNNNGG	5 cut(s)	76, 77, 96, 97, 118
BsmAI	GTCTC	2 cut(s)	45, 322
BsmFI	GGGAC	2 cut(s)	113, 144
BsnI	GGCC	3 cut(s)	30, 111, 421
Bso31I	GGTCTC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	280, 448
BspACI	CCGC	2 cut(s)	112, 156
BspANI	GGCC	3 cut(s)	30, 111, 421
BspHI	TCATGA	1 cut(s)	503
BspLI	GGNNCC	3 cut(s)	101, 102, 404
BspT107I	GGYRCC	1 cut(s)	402
BspTNI	GGTCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	280, 448
BssNI	GRCGYC	1 cut(s)	47
BssSI	CACGAG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	418
BstACI	GRCGYC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	283, 451
BstMAI	GTCTC	2 cut(s)	45, 322
BstMBI	GATC	2 cut(s)	280, 448
BstNI	CCWGG	1 cut(s)	418
BstSCI	CCNGG	2 cut(s)	126, 416
BstV2I	GAAGAC	1 cut(s)	255
BstXI	CCANNNNNNTGG	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	30, 111, 421
BtsIMutI	CAGTG	2 cut(s)	74, 390
CciI	TCATGA	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	1 cut(s)	504
CviJI	RGCY	6 cut(s)	30, 111, 211, 384, 421, 460
CviKI_1	RGCY	6 cut(s)	30, 111, 211, 384, 421, 460
CviQI	GTAC	1 cut(s)	262
DpnI	GATC	2 cut(s)	282, 450
DpnII	GATC	2 cut(s)	280, 448
DraI	TTTAAA	1 cut(s)	478
EaeI	YGGCCR	2 cut(s)	109, 419
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	416
FaeI	CATG	1 cut(s)	507
FaiI	YATR	7 cut(s)	21, 324, 336, 342, 387, 456, 505
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	2 cut(s)	113, 144
FatI	CATG	1 cut(s)	503
FbaI	TGATCA	2 cut(s)	280, 448
Fnu4HI	GCNGC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	30, 111, 421
HapII	CCGG	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	507
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	3 cut(s)	302, 322, 478
Hpy166II	GTNNAC	3 cut(s)	16, 54, 264
Hpy188I	TCNGA	2 cut(s)	45, 271
Hpy188III	TCNNGA	1 cut(s)	504
Hpy8I	GTNNAC	3 cut(s)	16, 54, 264
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4IV	ACGT	3 cut(s)	47, 133, 260
HpyCH4V	TGCA	1 cut(s)	362
HpySE526I	ACGT	3 cut(s)	47, 133, 260
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	507
KflI	GGGWCCC	1 cut(s)	100
Ksp22I	TGATCA	2 cut(s)	280, 448
Kzo9I	GATC	2 cut(s)	280, 448
LpnPI	CCDG	9 cut(s)	62, 140, 213, 269, 315, 403, 419, 430, 438
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	3 cut(s)	47, 133, 260
MaeIII	GTNAC	2 cut(s)	176, 470
MalI	GATC	2 cut(s)	282, 450
MboI	GATC	2 cut(s)	280, 448
MboII	GAAGA	1 cut(s)	260
MfeI	CAATTG	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	421
MluCI	AATT	7 cut(s)	61, 116, 182, 188, 220, 373, 492
MluNI	TGGCCA	1 cut(s)	421
MnlI	CCTC	5 cut(s)	41, 341, 374, 392, 499
Mox20I	TGGCCA	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	421
MseI	TTAA	1 cut(s)	477
MslI	CAYNNNNRTG	1 cut(s)	24
Msp20I	TGGCCA	1 cut(s)	421
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	2 cut(s)	128, 418
MunI	CAATTG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	418
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	2 cut(s)	280, 448
NlaIII	CATG	1 cut(s)	507
NlaIV	GGNNCC	3 cut(s)	101, 102, 404
PagI	TCATGA	1 cut(s)	503
PdmI	GAANNNNTTC	1 cut(s)	210
PkrI	GCNGC	1 cut(s)	113
PpuMI	RGGWCCY	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	3 cut(s)	101, 102, 404
PspPI	GGNCC	1 cut(s)	100
PspPPI	RGGWCCY	1 cut(s)	100
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	2 cut(s)	280, 448
Sau96I	GGNCC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	128, 418
SetI	ASST	8 cut(s)	13, 50, 136, 263, 352, 427, 462, 491
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	7 cut(s)	61, 116, 182, 188, 220, 373, 492
SsiI	CCGC	2 cut(s)	112, 156
SspI	AATATT	2 cut(s)	84, 296
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	126, 416
TaiI	ACGT	3 cut(s)	50, 136, 263
TasI	AATT	7 cut(s)	61, 116, 182, 188, 220, 373, 492
TauI	GCSGC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	2 cut(s)	81, 397
TspDTI	ATGAA	5 cut(s)	17, 181, 219, 261, 492
TspRI	CASTG	2 cut(s)	81, 397
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	2 cut(s)	182, 188
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	1 cut(s)	171
ZraI	GACGTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.