RchiOBHm_Chr5g0034011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013760
Physical Location & Seq
Forward (+)
27897470 .. 27898372
903 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31305

Sequence Viewer

Length: 432 bp
ATGTCTTTTGTTCTGTTGCCTCTATCGATTTCCCTTTATCATCTACAGCCACTATCACCGTTGCTCTTCGGGGCGTTTACCCAGCTCTTTGGAGCGTTTCCCTTGCTATTCGGAACGTTTACCTTCGATACACGAAGGAGTTCACCATGCAATTACTTATGGTATTTGCGGATCTCATCATCCCATGGTTCCTTGATACTTTCTCGGTGGTTGCTTATCTCCGGCTGTTCGGTGACAATCAGAGGGATGCATTTGGTACAGCTTGGCAGGAGCTTTGGGTCTCTATGGCATGTTTTGGTTGCTGGTTTCTTGGGTTTGTTTGTGTCCTTGTTCGATGCCTTTTCTGCATCGTGGATGTTGGATCTTGGTATGTTGTTGTATTGGAGCTCCTGTGTTGTTTGTGTTTGTTTTTCTCAGTTTTATTTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.11

Weight (kDa)

8.74

Isoelectric Point (pI)

62.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 169
AclI AACGTT 1 cut(s) 116
AclWI GGATC 2 cut(s) 179, 369
AfaI GTAC 1 cut(s) 258
AluBI AGCT 4 cut(s) 85, 262, 273, 387
AluI AGCT 4 cut(s) 85, 262, 273, 387
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 2 cut(s) 179, 369
Asp700I GAANNNNTTC 1 cut(s) 139
AsuHPI GGTGA 3 cut(s) 48, 135, 244
BanII GRGCYC 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 389
BcoDI GTCTC 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 190
BmsI GCATC 3 cut(s) 237, 325, 356
Bsa29I ATCGAT 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
BseCI ATCGAT 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 3 cut(s) 179, 252, 360
BseMII CTCAG 1 cut(s) 428
BseYI CCCAGC 1 cut(s) 81
BshVI ATCGAT 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 389
BsiSI CCGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 285
Bso31I GGTCTC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 389
Bsp143I GATC 2 cut(s) 171, 361
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 427
BspDI ATCGAT 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 2 cut(s) 179, 369
BspQI GCTCTTC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 2 cut(s) 171, 361
BssT1I CCWWGG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 414
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 3 cut(s) 179, 252, 360
BstKTI GATC 2 cut(s) 174, 364
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 2 cut(s) 171, 361
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstNSI RCATGY 1 cut(s) 293
BstSFI CTRYAG 1 cut(s) 44
BstX2I RGATCY 2 cut(s) 171, 361
BstXI CCANNNNNNTGG 1 cut(s) 89
BstYI RGATCY 2 cut(s) 171, 361
Bsu15I ATCGAT 1 cut(s) 26
BsuTUI ATCGAT 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 3 cut(s) 179, 252, 360
ClaI ATCGAT 1 cut(s) 26
Csp6I GTAC 1 cut(s) 257
CviAII CATG 3 cut(s) 147, 185, 290
CviJI RGCY 6 cut(s) 49, 85, 225, 262, 273, 387
CviKI_1 RGCY 6 cut(s) 49, 85, 225, 262, 273, 387
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 1 cut(s) 414
DpnI GATC 2 cut(s) 173, 363
DpnII GATC 2 cut(s) 171, 361
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Ecl136II GAGCTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 389
Eco31I GGTCTC 1 cut(s) 285
Eco53kI GAGCTC 1 cut(s) 387
EcoICRI GAGCTC 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 389
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 3 cut(s) 150, 188, 293
FaiI YATR 6 cut(s) 148, 160, 186, 286, 291, 371
FatI CATG 3 cut(s) 146, 184, 289
FokI GGATG 3 cut(s) 166, 259, 367
FriOI GRGCYC 1 cut(s) 389
GsaI CCCAGC 1 cut(s) 85
HapII CCGG 1 cut(s) 222
Hin1II CATG 3 cut(s) 150, 188, 293
HpaII CCGG 1 cut(s) 222
HphI GGTGA 3 cut(s) 48, 135, 244
Hpy166II GTNNAC 3 cut(s) 78, 120, 143
Hpy188I TCNGA 2 cut(s) 113, 242
Hpy8I GTNNAC 3 cut(s) 78, 120, 143
HpyAV CCTTC 2 cut(s) 129, 133
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 3 cut(s) 150, 250, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 3 cut(s) 150, 188, 293
Kzo9I GATC 2 cut(s) 171, 361
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 4 cut(s) 92, 270, 384, 392
LpnPI CCDG 5 cut(s) 95, 235, 253, 288, 403
LweI GCATC 3 cut(s) 237, 325, 356
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 173, 363
MboI GATC 2 cut(s) 171, 361
MboII GAAGA 1 cut(s) 58
MflI RGATCY 2 cut(s) 171, 361
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 2 cut(s) 30, 236
Mph1103I ATGCAT 1 cut(s) 252
MroXI GAANNNNTTC 1 cut(s) 139
MspI CCGG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 344
NcoI CCATGG 1 cut(s) 184
NdeII GATC 2 cut(s) 171, 361
NlaIII CATG 3 cut(s) 150, 188, 293
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 232
NsiI ATGCAT 1 cut(s) 252
NspI RCATGY 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 139
Psp124BI GAGCTC 1 cut(s) 389
Psp1406I AACGTT 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 190
PsuI RGATCY 2 cut(s) 171, 361
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
SacI GAGCTC 1 cut(s) 389
SapI GCTCTTC 1 cut(s) 71
Sau3AI GATC 2 cut(s) 171, 361
SduI GDGCHC 1 cut(s) 389
SetI ASST 6 cut(s) 87, 119, 125, 264, 275, 389
SfaNI GCATC 3 cut(s) 237, 325, 356
SfcI CTRYAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 151
SsiI CCGC 1 cut(s) 169
SstI GAGCTC 1 cut(s) 389
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 60
TaiI ACGT 1 cut(s) 119
TaqI TCGA 3 cut(s) 26, 126, 333
TasI AATT 1 cut(s) 151
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
XceI RCATGY 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 139
Zsp2I ATGCAT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.