Rh6BG209100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013760
Physical Location & Seq
Forward (+)
39440740 .. 39441664
925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG209100.1

Sequence Viewer

Length: 336 bp
ATGCAATTACTTATGGTATTTGCGGATCTCATCATCCCATGGTTCCTTAGTACTTTCTTGGTGGTTGCTTATCTCCGGTTGTTCGGTGACAATCGAAGGGATGCTTTTGGTACAGCTCGACGGGAGCTTTGGGTCTCTATGGCATGTTTTGGTTGCTGGTTTCTTGGGTTTGTTTGTGTCCTTGTTCGATGCCTTTTCCGCATCGTGGATGTTGGATCTGGGTATGCTATTGTATTGGAGCTCCTGTGTTGTTTGTGTTCGTTTTTCTCAGTTTTATTTGGTTTAGTTTGGATGGGACTCTGCTGCCCTCTCTCTGTAATTTTGTTGGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.59

Weight (kDa)

7.46

Isoelectric Point (pI)

35.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 23, 199
AclWI GGATC 2 cut(s) 33, 223
AfaI GTAC 2 cut(s) 52, 112
AfiI CCNNNNNNNGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 116, 127, 241
AluI AGCT 3 cut(s) 116, 127, 241
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 2 cut(s) 33, 223
ApeKI GCWGC 1 cut(s) 303
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AsuHPI GGTGA 1 cut(s) 98
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 290
BccI CCATC 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 139
BisI GCNGC 1 cut(s) 304
BlsI GCNGC 1 cut(s) 305
BmcAI AGTACT 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 44
BmsI GCATC 3 cut(s) 91, 179, 210
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 38
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 4 cut(s) 33, 106, 214, 297
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 309
Bso31I GGTCTC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 2 cut(s) 25, 215
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 2 cut(s) 23, 199
BspCNI CTCAG 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 44
BspPI GGATC 2 cut(s) 33, 223
BspTNI GGTCTC 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 2 cut(s) 25, 215
BssT1I CCWWGG 1 cut(s) 38
BstDEI CTNAG 2 cut(s) 47, 268
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 4 cut(s) 33, 106, 214, 297
BstKTI GATC 2 cut(s) 28, 218
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 2 cut(s) 25, 215
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 290
BstX2I RGATCY 2 cut(s) 25, 215
BstYI RGATCY 2 cut(s) 25, 215
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 4 cut(s) 33, 106, 214, 297
Csp6I GTAC 2 cut(s) 51, 111
CviAII CATG 2 cut(s) 39, 144
CviJI RGCY 3 cut(s) 116, 127, 241
CviKI_1 RGCY 3 cut(s) 116, 127, 241
CviQI GTAC 2 cut(s) 51, 111
DdeI CTNAG 2 cut(s) 47, 268
DpnI GATC 2 cut(s) 27, 217
DpnII GATC 2 cut(s) 25, 215
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 2 cut(s) 42, 147
FaiI YATR 5 cut(s) 14, 40, 140, 145, 225
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FaqI GGGAC 1 cut(s) 309
FatI CATG 2 cut(s) 38, 143
Fnu4HI GCNGC 1 cut(s) 304
FokI GGATG 4 cut(s) 20, 113, 221, 304
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 304
GluI GCNGC 1 cut(s) 304
HapII CCGG 1 cut(s) 76
Hin1II CATG 2 cut(s) 42, 147
HinfI GANTC 1 cut(s) 297
HpaII CCGG 1 cut(s) 76
HphI GGTGA 1 cut(s) 98
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 2 cut(s) 47, 268
Hsp92II CATG 2 cut(s) 42, 147
Kzo9I GATC 2 cut(s) 25, 215
LmnI GCTCC 3 cut(s) 124, 238, 246
LpnPI CCDG 4 cut(s) 89, 142, 204, 257
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 3 cut(s) 91, 179, 210
MaeIII GTNAC 1 cut(s) 86
MalI GATC 2 cut(s) 27, 217
MboI GATC 2 cut(s) 25, 215
MflI RGATCY 2 cut(s) 25, 215
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 2 cut(s) 5, 318
MlyI GAGTC 1 cut(s) 291
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 1 cut(s) 318
MseI TTAA 1 cut(s) 334
MspI CCGG 1 cut(s) 76
MwoI GCNNNNNNNGC 1 cut(s) 198
NcoI CCATGG 1 cut(s) 38
NdeII GATC 2 cut(s) 25, 215
NlaIII CATG 2 cut(s) 42, 147
NlaIV GGNNCC 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 86
NspI RCATGY 1 cut(s) 147
PkrI GCNGC 1 cut(s) 305
PleI GAGTC 1 cut(s) 291
PpsI GAGTC 1 cut(s) 291
Psp124BI GAGCTC 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 44
PsuI RGATCY 2 cut(s) 25, 215
RsaI GTAC 2 cut(s) 52, 112
RsaNI GTAC 2 cut(s) 51, 111
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 334
SatI GCNGC 1 cut(s) 304
Sau3AI GATC 2 cut(s) 25, 215
ScaI AGTACT 1 cut(s) 52
SchI GAGTC 1 cut(s) 291
SduI GDGCHC 1 cut(s) 243
SetI ASST 3 cut(s) 118, 129, 243
SfaNI GCATC 3 cut(s) 91, 179, 210
Sse9I AATT 2 cut(s) 5, 318
SsiI CCGC 2 cut(s) 23, 199
SstI GAGCTC 1 cut(s) 243
StyI CCWWGG 1 cut(s) 38
TaqI TCGA 3 cut(s) 94, 118, 187
TasI AATT 2 cut(s) 5, 318
TatI WGTACW 1 cut(s) 50
Tru1I TTAA 1 cut(s) 334
Tru9I TTAA 1 cut(s) 334
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 1 cut(s) 303
Tsp45I GTSAC 1 cut(s) 86
XceI RCATGY 1 cut(s) 147
ZrmI AGTACT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.