Rh7AG042500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013760
Physical Location & Seq
Reverse (-)
2871361 .. 2872544
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG042500.1

Sequence Viewer

Length: 618 bp
ATGCCTCTTCTCTCGGCTTTCCCTTTCAAGTCTGCTCCATCTAGCCTCCCATCTCTACTCCCACCATGCTCTTTCCTCTCCCTCCTTCCCCTCCTTCGTTTCTTTTCCCATCTTTTCACCCTCTCTGTGTCGTTGTTCCTTGAACATCATCCAAAGATGTCTTTTTGTTCTGCTGCCTCTGTCGATTTCCCTTTATCATCTACAACCACTATCACCGTTGCCCTTCGGGGTGTTTACCCAGCTCTTCGAAGCGTTTACCTTCCATACACGAAGGAGTTCACCACGCAATTACTTATGGTATTTGCGGATCTCATCATCCCATGGTTCCTTGGTACTTTCTCGGTGGTTGCTTATCTCCGGCTGTTCGATGACAATCGGAGGGATGCTTTTGGTACAGCTCGGTGGGAGCTTTGGGTCTCTATGGCATGTTTTGGTTGCTGGTTTCTTGGGTTTGTTTGTGTCCTTGTTCGATGCCTTTTCCACATCGTGGATGTTGGATCTGGGTATGCTATTGTATTGGAGCTCATGTGTTGTTTGTGTTTGTTTTTCTCAGTTTTATTTGGTTTAGTTTGGATGGGAATCTGTTGCCCTCTCTTTGTAATCTTGTTGGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.05

Weight (kDa)

7.5

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 487
AciI CCGC 1 cut(s) 305
AclWI GGATC 2 cut(s) 315, 505
AdeI CACNNNGTG 1 cut(s) 487
AfaI GTAC 2 cut(s) 334, 394
AfiI CCNNNNNNNGG 1 cut(s) 487
AgsI TTSAA 2 cut(s) 28, 143
AluBI AGCT 4 cut(s) 242, 398, 409, 523
AluI AGCT 4 cut(s) 242, 398, 409, 523
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 2 cut(s) 315, 505
ApeKI GCWGC 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 109, 205, 271
AsuII TTCGAA 1 cut(s) 247
BanII GRGCYC 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 525
BbvI GCAGC 1 cut(s) 160
BccI CCATC 4 cut(s) 46, 58, 117, 568
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 326
BmsI GCATC 2 cut(s) 373, 461
Bpu14I TTCGAA 1 cut(s) 247
BsaBI GATNNNNATC 2 cut(s) 372, 578
BsaI GGTCTC 1 cut(s) 421
BsaJI CCNNGG 2 cut(s) 320, 328
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 1 cut(s) 487
Bse8I GATNNNNATC 2 cut(s) 372, 578
BseDI CCNNGG 2 cut(s) 320, 328
BseGI GGATG 5 cut(s) 148, 315, 388, 496, 579
BseJI GATNNNNATC 2 cut(s) 372, 578
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMII CTCAG 1 cut(s) 564
BseXI GCAGC 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 525
BsiSI CCGG 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 487
BsmAI GTCTC 1 cut(s) 421
Bso31I GGTCTC 1 cut(s) 421
Bsp119I TTCGAA 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 2 cut(s) 307, 497
Bsp19I CCATGG 1 cut(s) 320
BspACI CCGC 1 cut(s) 305
BspCNI CTCAG 1 cut(s) 563
BspLI GGNNCC 1 cut(s) 326
BspPI GGATC 2 cut(s) 315, 505
BspQI GCTCTTC 1 cut(s) 249
BspT104I TTCGAA 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 421
BssECI CCNNGG 2 cut(s) 320, 328
BssMI GATC 2 cut(s) 307, 497
BssT1I CCWWGG 2 cut(s) 320, 328
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 2 cut(s) 12, 249
BstBI TTCGAA 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 550
BstDSI CCRYGG 1 cut(s) 320
BstF5I GGATG 5 cut(s) 148, 315, 388, 496, 579
BstKTI GATC 2 cut(s) 310, 500
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 2 cut(s) 307, 497
BstNSI RCATGY 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 2 cut(s) 307, 497
BstYI RGATCY 2 cut(s) 307, 497
BtgI CCRYGG 1 cut(s) 320
BtsCI GGATG 5 cut(s) 148, 315, 388, 496, 579
Csp6I GTAC 2 cut(s) 333, 393
CviAII CATG 4 cut(s) 66, 321, 426, 526
CviJI RGCY 7 cut(s) 17, 45, 242, 361, 398, 409, 523
CviKI_1 RGCY 7 cut(s) 17, 45, 242, 361, 398, 409, 523
CviQI GTAC 2 cut(s) 333, 393
DdeI CTNAG 1 cut(s) 550
DpnI GATC 2 cut(s) 309, 499
DpnII GATC 2 cut(s) 307, 497
DraIII CACNNNGTG 1 cut(s) 487
Eam1104I CTCTTC 2 cut(s) 12, 249
EarI CTCTTC 2 cut(s) 12, 249
Ecl136II GAGCTC 1 cut(s) 523
Eco130I CCWWGG 2 cut(s) 320, 328
Eco24I GRGCYC 1 cut(s) 525
Eco31I GGTCTC 1 cut(s) 421
Eco53kI GAGCTC 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 523
EcoT14I CCWWGG 2 cut(s) 320, 328
EcoT38I GRGCYC 1 cut(s) 525
ErhI CCWWGG 2 cut(s) 320, 328
FaeI CATG 4 cut(s) 69, 324, 429, 529
FaiI YATR 8 cut(s) 67, 265, 296, 322, 422, 427, 507, 527
FatI CATG 4 cut(s) 65, 320, 425, 525
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 5 cut(s) 135, 302, 395, 503, 586
FriOI GRGCYC 1 cut(s) 525
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 1 cut(s) 42
GluI GCNGC 1 cut(s) 174
GsaI CCCAGC 1 cut(s) 242
HapII CCGG 1 cut(s) 358
Hin1II CATG 4 cut(s) 69, 324, 429, 529
HinfI GANTC 1 cut(s) 579
HpaII CCGG 1 cut(s) 358
HphI GGTGA 3 cut(s) 109, 205, 271
Hpy166II GTNNAC 3 cut(s) 235, 256, 279
Hpy188I TCNGA 1 cut(s) 378
Hpy8I GTNNAC 3 cut(s) 235, 256, 279
HpyAV CCTTC 5 cut(s) 95, 104, 233, 265, 269
HpyCH4III ACNGT 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 550
Hsp92II CATG 4 cut(s) 69, 324, 429, 529
Kzo9I GATC 2 cut(s) 307, 497
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 3 cut(s) 40, 406, 520
LpnPI CCDG 4 cut(s) 252, 371, 424, 486
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 2 cut(s) 373, 461
MaeI CTAG 1 cut(s) 42
MalI GATC 2 cut(s) 309, 499
MboI GATC 2 cut(s) 307, 497
MboII GAAGA 1 cut(s) 236
MflI RGATCY 2 cut(s) 307, 497
MhlI GDGCHC 1 cut(s) 525
MluCI AATT 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 475
MnlI CCTC 9 cut(s) 15, 56, 86, 92, 101, 131, 187, 372, 600
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 1 cut(s) 616
MspI CCGG 1 cut(s) 358
NcoI CCATGG 1 cut(s) 320
NdeII GATC 2 cut(s) 307, 497
NlaIII CATG 4 cut(s) 69, 324, 429, 529
NlaIV GGNNCC 1 cut(s) 326
NspI RCATGY 1 cut(s) 429
NspV TTCGAA 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 579
PflMI CCANNNNNTGG 1 cut(s) 487
PkrI GCNGC 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 525
PspFI CCCAGC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 326
PsuI RGATCY 2 cut(s) 307, 497
RsaI GTAC 2 cut(s) 334, 394
RsaNI GTAC 2 cut(s) 333, 393
SacI GAGCTC 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 1 cut(s) 616
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 307, 497
SduI GDGCHC 1 cut(s) 525
SetI ASST 5 cut(s) 244, 261, 400, 411, 525
SfaNI GCATC 2 cut(s) 373, 461
SfuI TTCGAA 1 cut(s) 247
Sse9I AATT 1 cut(s) 287
SsiI CCGC 1 cut(s) 305
SspMI CTAG 1 cut(s) 42
SstI GAGCTC 1 cut(s) 525
StyI CCWWGG 2 cut(s) 320, 328
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 4 cut(s) 183, 247, 366, 469
TasI AATT 1 cut(s) 287
TfiI GAWTC 1 cut(s) 579
Tru1I TTAA 1 cut(s) 616
Tru9I TTAA 1 cut(s) 616
TseI GCWGC 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 487
XceI RCATGY 1 cut(s) 429
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.