Rh1DG086000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0013760
Physical Location & Seq
Reverse (-)
16005119 .. 16006921
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG086000.1

Sequence Viewer

Length: 639 bp
ATGCCTCTTCTCTCGGCTTTCCCTTTAAAGTATGCTCCATCTAGCCTCCCATCTCCACTCCCACCATGCTCTTTCCTCTCCTTCCTTCCCCTCTTTTGTTTCTTTTCCCATCTCTTCACCCTCTCTGTGTTGTTGTTCCTTGAACATCATCCAAAGATGTCTTTTTGTTCTGTTGCCTCTGTCGATTTACCTTTATCATCTACAGCCACTATCACCGTTGCCCTTCGGGGCGTTTACCCAGCTCTTCGGAGCGCTTCCCTTGCTCTTCGTAGCGTTTACCTTCGATACCCGAAGGAGTTCACCACGCAATTACTTATGGTATTTGCGGATCTCATCATCCCATGGTTCCTTGGTACTTTCTCGGTGGTTGATTATCTCCCGCTGTTCGGTGACAATCGAAGGGATGCTTTTGATATAGCTCGGCGGGAGCTTTGGGTCTCTATGGCATGTTTTGGTTGTTGGTTTCTTGGGCTTGTTTGTGTCCTTGTTCGATGCCTTTCCGCATCGTGGATGTTGGATCTGGGTCTGCTATTGTATTGGAGCTCCTGTGTTGTTTGTGTTTGTTTTTCTCAATTGTATTTTGGTTTAGTTTGGATGGGCCTCTGCTGCCCTCTCTCTGTAATCTTGTTGGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.8

Weight (kDa)

7.97

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 326, 380, 424, 501
AclWI GGATC 2 cut(s) 336, 525
AfaI GTAC 1 cut(s) 355
AfeI AGCGCT 1 cut(s) 253
AfiI CCNNNNNNNGG 2 cut(s) 386, 507
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 4 cut(s) 242, 419, 430, 543
AluI AGCT 4 cut(s) 242, 419, 430, 543
Alw21I GWGCWC 1 cut(s) 545
Alw26I GTCTC 1 cut(s) 442
AlwI GGATC 2 cut(s) 336, 525
Aor51HI AGCGCT 1 cut(s) 253
AoxI GGCC 1 cut(s) 598
ApeKI GCWGC 1 cut(s) 606
Asp700I GAANNNNTTC 1 cut(s) 296
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 598
AsuHPI GGTGA 4 cut(s) 109, 205, 292, 401
BanII GRGCYC 1 cut(s) 545
Bbv12I GWGCWC 1 cut(s) 545
BbvI GCAGC 1 cut(s) 593
BccI CCATC 4 cut(s) 46, 58, 117, 589
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 255
BisI GCNGC 1 cut(s) 607
BlsI GCNGC 1 cut(s) 608
BmgT120I GGNCC 1 cut(s) 598
BmiI GGNNCC 1 cut(s) 347
BmsI GCATC 3 cut(s) 394, 482, 512
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 2 cut(s) 341, 349
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 507
BseDI CCNNGG 2 cut(s) 341, 349
BseGI GGATG 5 cut(s) 148, 336, 409, 516, 600
BseLI CCNNNNNNNGG 2 cut(s) 386, 507
BseXI GCAGC 1 cut(s) 593
BseYI CCCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 600
BsiHKAI GWGCWC 1 cut(s) 545
BslI CCNNNNNNNGG 2 cut(s) 386, 507
BsmAI GTCTC 1 cut(s) 442
BsnI GGCC 1 cut(s) 600
Bso31I GGTCTC 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 545
Bsp143I GATC 2 cut(s) 328, 517
Bsp19I CCATGG 1 cut(s) 341
BspACI CCGC 4 cut(s) 326, 380, 424, 501
BspANI GGCC 1 cut(s) 600
BspLI GGNNCC 1 cut(s) 347
BspPI GGATC 2 cut(s) 336, 525
BspQI GCTCTTC 2 cut(s) 249, 270
BspTNI GGTCTC 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 341, 349
BssMI GATC 2 cut(s) 328, 517
BssT1I CCWWGG 2 cut(s) 341, 349
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 4 cut(s) 12, 119, 249, 270
BstDSI CCRYGG 1 cut(s) 341
BstF5I GGATG 5 cut(s) 148, 336, 409, 516, 600
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 2 cut(s) 331, 520
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 2 cut(s) 328, 517
BstMWI GCNNNNNNNGC 2 cut(s) 260, 606
BstNSI RCATGY 1 cut(s) 450
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 593
BstX2I RGATCY 2 cut(s) 328, 517
BstYI RGATCY 2 cut(s) 328, 517
BsuRI GGCC 1 cut(s) 600
BtgI CCRYGG 1 cut(s) 341
BtsCI GGATG 5 cut(s) 148, 336, 409, 516, 600
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 598
Csp6I GTAC 1 cut(s) 354
CviAII CATG 3 cut(s) 66, 342, 447
CviJI RGCY 9 cut(s) 17, 45, 206, 242, 419, 430, 472, 543, 600
CviKI_1 RGCY 9 cut(s) 17, 45, 206, 242, 419, 430, 472, 543, 600
CviQI GTAC 1 cut(s) 354
DpnI GATC 2 cut(s) 330, 519
DpnII GATC 2 cut(s) 328, 517
DraI TTTAAA 1 cut(s) 27
Eam1104I CTCTTC 4 cut(s) 12, 119, 249, 270
EarI CTCTTC 4 cut(s) 12, 119, 249, 270
Ecl136II GAGCTC 1 cut(s) 543
Eco130I CCWWGG 2 cut(s) 341, 349
Eco24I GRGCYC 1 cut(s) 545
Eco31I GGTCTC 1 cut(s) 442
Eco47III AGCGCT 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 543
EcoT14I CCWWGG 2 cut(s) 341, 349
EcoT38I GRGCYC 1 cut(s) 545
ErhI CCWWGG 2 cut(s) 341, 349
FaeI CATG 3 cut(s) 69, 345, 450
FaiI YATR 7 cut(s) 33, 67, 317, 343, 416, 443, 448
FalI AAGNNNNNCTT 2 cut(s) 391, 423
FatI CATG 3 cut(s) 65, 341, 446
FauI CCCGC 2 cut(s) 387, 417
Fnu4HI GCNGC 1 cut(s) 607
FokI GGATG 5 cut(s) 135, 323, 416, 523, 607
FriOI GRGCYC 1 cut(s) 545
Fsp4HI GCNGC 1 cut(s) 607
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 253
GluI GCNGC 1 cut(s) 607
GsaI CCCAGC 1 cut(s) 242
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 1 cut(s) 600
HhaI GCGC 1 cut(s) 254
Hin1II CATG 3 cut(s) 69, 345, 450
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HphI GGTGA 4 cut(s) 109, 205, 292, 401
Hpy166II GTNNAC 3 cut(s) 235, 277, 300
Hpy188I TCNGA 1 cut(s) 249
Hpy8I GTNNAC 3 cut(s) 235, 277, 300
HpyAV CCTTC 6 cut(s) 91, 95, 233, 286, 290, 393
HpyCH4III ACNGT 1 cut(s) 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 606
Hsp92II CATG 3 cut(s) 69, 345, 450
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 2 cut(s) 328, 517
LguI GCTCTTC 2 cut(s) 249, 270
LmnI GCTCC 5 cut(s) 40, 249, 427, 540, 548
LpnPI CCDG 3 cut(s) 252, 506, 559
Lsp1109I GCAGC 1 cut(s) 593
LweI GCATC 3 cut(s) 394, 482, 512
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 389
MalI GATC 2 cut(s) 330, 519
MboI GATC 2 cut(s) 328, 517
MboII GAAGA 3 cut(s) 106, 236, 257
MfeI CAATTG 1 cut(s) 572
MflI RGATCY 2 cut(s) 328, 517
MhlI GDGCHC 1 cut(s) 545
MluCI AATT 2 cut(s) 308, 572
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 8 cut(s) 15, 56, 86, 101, 131, 187, 611, 621
MroXI GAANNNNTTC 1 cut(s) 296
MseI TTAA 2 cut(s) 26, 637
MspA1I CMGCKG 1 cut(s) 382
MunI CAATTG 1 cut(s) 572
MwoI GCNNNNNNNGC 2 cut(s) 260, 606
NcoI CCATGG 1 cut(s) 341
NdeII GATC 2 cut(s) 328, 517
NlaIII CATG 3 cut(s) 69, 345, 450
NlaIV GGNNCC 1 cut(s) 347
NmeAIII GCCGAG 1 cut(s) 400
NmuCI GTSAC 1 cut(s) 389
NspI RCATGY 1 cut(s) 450
PciSI GCTCTTC 2 cut(s) 249, 270
PdmI GAANNNNTTC 1 cut(s) 296
PkrI GCNGC 1 cut(s) 608
Psp124BI GAGCTC 1 cut(s) 545
PspFI CCCAGC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 1 cut(s) 598
PsuI RGATCY 2 cut(s) 328, 517
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SacI GAGCTC 1 cut(s) 545
SapI GCTCTTC 2 cut(s) 249, 270
SaqAI TTAA 2 cut(s) 26, 637
SatI GCNGC 1 cut(s) 607
Sau3AI GATC 2 cut(s) 328, 517
Sau96I GGNCC 1 cut(s) 598
SduI GDGCHC 1 cut(s) 545
SetI ASST 6 cut(s) 193, 244, 282, 421, 432, 545
SfaNI GCATC 3 cut(s) 394, 482, 512
SfcI CTRYAG 1 cut(s) 201
Sse9I AATT 2 cut(s) 308, 572
SsiI CCGC 4 cut(s) 326, 380, 424, 501
SspMI CTAG 1 cut(s) 42
SstI GAGCTC 1 cut(s) 545
StyI CCWWGG 2 cut(s) 341, 349
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 4 cut(s) 183, 283, 397, 490
TasI AATT 2 cut(s) 308, 572
Tru1I TTAA 2 cut(s) 26, 637
Tru9I TTAA 2 cut(s) 26, 637
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 1 cut(s) 606
Tsp45I GTSAC 1 cut(s) 389
XceI RCATGY 1 cut(s) 450
XmnI GAANNNNTTC 1 cut(s) 296
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.