Rh5BG405200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0013760
Physical Location & Seq
Reverse (-)
65755788 .. 65756108
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG405200.1

Sequence Viewer

Length: 321 bp
ATGTCTTTTTGTTCTGATGCCTTTGTCGATTTACCTTTATCATCTACAGCCACTATCACCGTTGCCCTTCGGGGCGTTTACCCAGCTCTTCGGAGCTCCGCTCTTCGAAGCGTTTCCCTTGCTCTTCGGAGCGTTTACCTTCGATACACGAAGGAGTTCACCACGCAATTACTTATGGTATTTGCGGATCTCATCATCCCATGGTTCCTTGGTACTTTCTCGGTGGTTGTTTATCTTCGGTTGTTCGGTGACAATCTGAGGGATGCTTTTGGTACAGCTCGGCAGGAGCTTTGGGTCTCTATGGCATGTTTTGGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.91

Weight (kDa)

8.74

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 101
AciI CCGC 2 cut(s) 99, 185
AclWI GGATC 1 cut(s) 195
AfaI GTAC 2 cut(s) 214, 274
AluBI AGCT 4 cut(s) 86, 96, 278, 289
AluI AGCT 4 cut(s) 86, 96, 278, 289
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 1 cut(s) 195
Asp700I GAANNNNTTC 2 cut(s) 112, 155
AsuHPI GGTGA 3 cut(s) 49, 151, 260
AsuII TTCGAA 1 cut(s) 106
BanII GRGCYC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 1 cut(s) 319
BfmI CTRYAG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 206
BmsI GCATC 2 cut(s) 7, 253
BplI GAGNNNNNCTC 2 cut(s) 85, 117
Bpu14I TTCGAA 1 cut(s) 106
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 2 cut(s) 200, 208
BseDI CCNNGG 2 cut(s) 200, 208
BseGI GGATG 2 cut(s) 195, 268
BseMII CTCAG 1 cut(s) 248
BseYI CCCAGC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 301
Bso31I GGTCTC 1 cut(s) 301
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 187
Bsp19I CCATGG 1 cut(s) 200
BspACI CCGC 2 cut(s) 99, 185
BspCNI CTCAG 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 206
BspPI GGATC 1 cut(s) 195
BspQI GCTCTTC 3 cut(s) 93, 108, 129
BspT104I TTCGAA 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 301
BsrBI CCGCTC 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 200, 208
BssMI GATC 1 cut(s) 187
BssT1I CCWWGG 2 cut(s) 200, 208
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 3 cut(s) 93, 108, 129
BstBI TTCGAA 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 257
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 195, 268
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 1 cut(s) 187
BstNSI RCATGY 1 cut(s) 309
BstSFI CTRYAG 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 2 cut(s) 195, 268
Csp6I GTAC 2 cut(s) 213, 273
CviAII CATG 2 cut(s) 201, 306
CviJI RGCY 5 cut(s) 50, 86, 96, 278, 289
CviKI_1 RGCY 5 cut(s) 50, 86, 96, 278, 289
CviQI GTAC 2 cut(s) 213, 273
DdeI CTNAG 1 cut(s) 257
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eam1104I CTCTTC 3 cut(s) 93, 108, 129
EarI CTCTTC 3 cut(s) 93, 108, 129
Ecl136II GAGCTC 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 200, 208
Eco24I GRGCYC 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 96
EcoT14I CCWWGG 2 cut(s) 200, 208
EcoT38I GRGCYC 1 cut(s) 98
ErhI CCWWGG 2 cut(s) 200, 208
FaeI CATG 2 cut(s) 204, 309
FaiI YATR 4 cut(s) 176, 202, 302, 307
FatI CATG 2 cut(s) 200, 305
FokI GGATG 2 cut(s) 182, 275
FriOI GRGCYC 1 cut(s) 98
FspBI CTAG 1 cut(s) 319
GsaI CCCAGC 1 cut(s) 86
Hin1II CATG 2 cut(s) 204, 309
HphI GGTGA 3 cut(s) 49, 151, 260
Hpy166II GTNNAC 3 cut(s) 79, 136, 159
Hpy188I TCNGA 4 cut(s) 16, 93, 129, 258
Hpy8I GTNNAC 3 cut(s) 79, 136, 159
HpyAV CCTTC 3 cut(s) 77, 145, 149
HpyCH4III ACNGT 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 257
Hsp92II CATG 2 cut(s) 204, 309
Kzo9I GATC 1 cut(s) 187
LguI GCTCTTC 3 cut(s) 93, 108, 129
LmnI GCTCC 4 cut(s) 93, 101, 129, 286
LpnPI CCDG 2 cut(s) 96, 269
LweI GCATC 2 cut(s) 7, 253
MaeI CTAG 1 cut(s) 319
MaeIII GTNAC 2 cut(s) 248, 314
MalI GATC 1 cut(s) 189
MbiI CCGCTC 1 cut(s) 101
MboI GATC 1 cut(s) 187
MboII GAAGA 4 cut(s) 80, 95, 116, 227
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 1 cut(s) 167
MnlI CCTC 1 cut(s) 252
MroXI GAANNNNTTC 2 cut(s) 112, 155
NcoI CCATGG 1 cut(s) 200
NdeII GATC 1 cut(s) 187
NlaIII CATG 2 cut(s) 204, 309
NlaIV GGNNCC 1 cut(s) 206
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 248
NspI RCATGY 1 cut(s) 309
NspV TTCGAA 1 cut(s) 106
PciSI GCTCTTC 3 cut(s) 93, 108, 129
PdmI GAANNNNTTC 2 cut(s) 112, 155
Psp124BI GAGCTC 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 206
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 2 cut(s) 214, 274
RsaNI GTAC 2 cut(s) 213, 273
SacI GAGCTC 1 cut(s) 98
SapI GCTCTTC 3 cut(s) 93, 108, 129
Sau3AI GATC 1 cut(s) 187
SduI GDGCHC 1 cut(s) 98
SetI ASST 6 cut(s) 37, 88, 98, 141, 280, 291
SfaNI GCATC 2 cut(s) 7, 253
SfcI CTRYAG 1 cut(s) 45
SfuI TTCGAA 1 cut(s) 106
Sse9I AATT 1 cut(s) 167
SsiI CCGC 2 cut(s) 99, 185
SspMI CTAG 1 cut(s) 319
SstI GAGCTC 1 cut(s) 98
StyI CCWWGG 2 cut(s) 200, 208
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 3 cut(s) 27, 106, 142
TasI AATT 1 cut(s) 167
TseFI GTSAC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 248
XceI RCATGY 1 cut(s) 309
XmnI GAANNNNTTC 2 cut(s) 112, 155
XspI CTAG 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.