Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013760

Physical Location & Seq

Genomic Coordinates Forward (+)

27708021 .. 27708864

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG242300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCCTCTTATCTCGGCTTTCCCTTTCAAGTCTGCTCCATCTAGCCTCCCATCTCCACTCCCACCATGCTCTTTCCTCTCCCTCCTTCGTTTTTTTCCCATCTCTTCACCCTCTCTGTGTTGTTGTTCCTTGAACATCATCCAAAGATGTCTTTTGTTCTGTTGCCTCTATCGATTTCCCTTTATCATCTACAACAACTATCATCGTTGCTCTTCGGGGCGTTTACCCAGCTCTTGGAGCGTTTCCCTTGCTCTTCAGAACGTTTACCTTCGATACACGAAGGAGTTCACCATGCAATTAATTATGGTATTTGCGGATCTCATCATCCCATGGTTCCTTGGTACTTTCTCGGTGGTTGCTTATCTCCGGCTGTTCGGTGACAATCAGAGGGATGCTTTTGGTACAGCTCGGCGGGAGCTTTGGGTCTCTATGGCATGTTTTGGTTGCTGGTTTCTTTGGTTTATTTGTGTCCTTGTTAGATGCCTTTTCCACATCGTGGATGTTGGATCTGGGTATGATGTTGTATTGGAGCTCCTATGTTGTTTGTGTTTGTTTTCTCAATTTTATTTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.99

Weight (kDa)

8.52

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013760)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462081 RchiOBHm_Chr5g0034011
rosa_laevigata	RLG00000010186
rosa_samantha	Rh1CG079700 Rh1DG086000 Rh3AG152800 Rh3BG107700 Rh3BG176800 Rh3CG167700 Rh5AG235100 Rh5BG405200 Rh5DG242300 Rh6AG206100 Rh6BG209100 Rh7AG042500 Rh7CG488800 Rh7DG042300 Rh7DG457300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	234, 496
AciI	CCGC	2 cut(s)	314, 412
AclI	AACGTT	1 cut(s)	261
AclWI	GGATC	2 cut(s)	324, 514
AcuI	CTGAAG	1 cut(s)	239
AdeI	CACNNNGTG	1 cut(s)	496
AfaI	GTAC	2 cut(s)	343, 403
AfiI	CCNNNNNNNGG	2 cut(s)	234, 496
AgsI	TTSAA	2 cut(s)	28, 133
AluBI	AGCT	4 cut(s)	231, 407, 418, 532
AluI	AGCT	4 cut(s)	231, 407, 418, 532
Alw21I	GWGCWC	1 cut(s)	534
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	2 cut(s)	324, 514
AseI	ATTAAT	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	284
AsuHPI	GGTGA	3 cut(s)	99, 280, 389
BanII	GRGCYC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	534
BccI	CCATC	3 cut(s)	46, 58, 107
BcoDI	GTCTC	1 cut(s)	430
BfaI	CTAG	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	335
BmsI	GCATC	2 cut(s)	382, 470
Bsa29I	ATCGAT	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	430
BsaJI	CCNNGG	2 cut(s)	329, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 496
BseCI	ATCGAT	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	329, 337
BseGI	GGATG	4 cut(s)	138, 324, 397, 505
BseLI	CCNNNNNNNGG	2 cut(s)	234, 496
BseYI	CCCAGC	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	534
BsiSI	CCGG	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	234, 496
BsmAI	GTCTC	1 cut(s)	430
Bso31I	GGTCTC	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	2 cut(s)	316, 506
Bsp19I	CCATGG	1 cut(s)	329
BspACI	CCGC	2 cut(s)	314, 412
BspDI	ATCGAT	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	335
BspPI	GGATC	2 cut(s)	324, 514
BspQI	GCTCTTC	2 cut(s)	217, 258
BspTNI	GGTCTC	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	329, 337
BssMI	GATC	2 cut(s)	316, 506
BssT1I	CCWWGG	2 cut(s)	329, 337
Bst6I	CTCTTC	3 cut(s)	109, 217, 258
BstDSI	CCRYGG	1 cut(s)	329
BstF5I	GGATG	4 cut(s)	138, 324, 397, 505
BstKTI	GATC	2 cut(s)	319, 509
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	2 cut(s)	316, 506
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	316, 506
BstYI	RGATCY	2 cut(s)	316, 506
Bsu15I	ATCGAT	1 cut(s)	172
BsuTUI	ATCGAT	1 cut(s)	172
BtgI	CCRYGG	1 cut(s)	329
BtsCI	GGATG	4 cut(s)	138, 324, 397, 505
ClaI	ATCGAT	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	342, 402
CviAII	CATG	4 cut(s)	66, 292, 330, 435
CviJI	RGCY	7 cut(s)	17, 45, 231, 370, 407, 418, 532
CviKI_1	RGCY	7 cut(s)	17, 45, 231, 370, 407, 418, 532
CviQI	GTAC	2 cut(s)	342, 402
DpnI	GATC	2 cut(s)	318, 508
DpnII	GATC	2 cut(s)	316, 506
DraIII	CACNNNGTG	1 cut(s)	496
Eam1104I	CTCTTC	3 cut(s)	109, 217, 258
EarI	CTCTTC	3 cut(s)	109, 217, 258
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	2 cut(s)	329, 337
Eco24I	GRGCYC	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	430
Eco53kI	GAGCTC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	532
EcoT14I	CCWWGG	2 cut(s)	329, 337
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	2 cut(s)	329, 337
FaeI	CATG	4 cut(s)	69, 295, 333, 438
FaiI	YATR	8 cut(s)	67, 293, 305, 331, 431, 436, 516, 538
FatI	CATG	4 cut(s)	65, 291, 329, 434
FauI	CCCGC	1 cut(s)	405
FokI	GGATG	4 cut(s)	125, 311, 404, 512
FriOI	GRGCYC	1 cut(s)	534
FspBI	CTAG	1 cut(s)	42
GsaI	CCCAGC	1 cut(s)	231
HapII	CCGG	1 cut(s)	367
Hin1II	CATG	4 cut(s)	69, 295, 333, 438
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	3 cut(s)	99, 280, 389
Hpy166II	GTNNAC	3 cut(s)	224, 265, 288
Hpy188I	TCNGA	2 cut(s)	258, 387
Hpy8I	GTNNAC	3 cut(s)	224, 265, 288
HpyAV	CCTTC	3 cut(s)	95, 274, 278
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	69, 295, 333, 438
Kzo9I	GATC	2 cut(s)	316, 506
LguI	GCTCTTC	2 cut(s)	217, 258
LmnI	GCTCC	5 cut(s)	40, 237, 415, 529, 537
LpnPI	CCDG	4 cut(s)	241, 380, 433, 495
LweI	GCATC	2 cut(s)	382, 470
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	318, 508
MboI	GATC	2 cut(s)	316, 506
MboII	GAAGA	3 cut(s)	96, 204, 245
MflI	RGATCY	2 cut(s)	316, 506
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	3 cut(s)	296, 300, 560
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	7 cut(s)	15, 56, 86, 92, 121, 176, 381
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	1 cut(s)	299
MspI	CCGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	1 cut(s)	237
NcoI	CCATGG	1 cut(s)	329
NdeII	GATC	2 cut(s)	316, 506
NlaIII	CATG	4 cut(s)	69, 295, 333, 438
NlaIV	GGNNCC	1 cut(s)	335
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	1 cut(s)	438
PciSI	GCTCTTC	2 cut(s)	217, 258
PdmI	GAANNNNTTC	1 cut(s)	284
PflMI	CCANNNNNTGG	2 cut(s)	234, 496
PshBI	ATTAAT	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	534
Psp1406I	AACGTT	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	335
PsuI	RGATCY	2 cut(s)	316, 506
RsaI	GTAC	2 cut(s)	343, 403
RsaNI	GTAC	2 cut(s)	342, 402
SacI	GAGCTC	1 cut(s)	534
SapI	GCTCTTC	2 cut(s)	217, 258
SaqAI	TTAA	1 cut(s)	299
Sau3AI	GATC	2 cut(s)	316, 506
SduI	GDGCHC	1 cut(s)	534
SetI	ASST	6 cut(s)	233, 264, 270, 409, 420, 534
SfaNI	GCATC	2 cut(s)	382, 470
Sse9I	AATT	3 cut(s)	296, 300, 560
SsiI	CCGC	2 cut(s)	314, 412
SspMI	CTAG	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	534
StyI	CCWWGG	2 cut(s)	329, 337
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	172, 271
TasI	AATT	3 cut(s)	296, 300, 560
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
Van91I	CCANNNNNTGG	2 cut(s)	234, 496
VspI	ATTAAT	1 cut(s)	299
XceI	RCATGY	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.