Rh1CG079700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013760
Physical Location & Seq
Reverse (-)
16690931 .. 16691590
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG079700.1

Sequence Viewer

Length: 660 bp
ATGCCTCCTCTCTCGGCTTTCCCTTTAAAGTATGCTCCATCTAGCCTCCCATCTCCACTCCCACCATGCTCTTTCCTCTCCTTCCTTCCCCTCTTTTGTTTCTTTTCCCATCTCTTCACCCTCTCTGTGTTGTTGTTCCTTGAACATCATCCAAAGATGTCTTTTTGTTCTGTTGCCTCTGTCGATTTACCTTTATCATCTACAGCCACTATCACCGTTGCCCTTCGGGGCGTTTACCCAGCTCTTCAGAGCGCTTCCCTTGCTCTTCGGAGCACTTCCCTTGCTCTTCGTAGCGTTTACCTTCGATACCCGAAGGAGTTCACCACGCAATTACTTATGGTATTTGCGGATCTCATCATCCCATGGTTCCTTGGTACTTTCTCAGTGGTTGATTATCTCCCGCTGTTCGGTGACAATCGAAGGGATGCTTTTGGTATAGCTCGGCGGGAGCTTTGGGTCTCTATGGCATGTTTTGGTTGTTGGTTTCTTGGGCTTGTTTGTGTCCTTGTTCGATGCCTTTCCGCATCGTGGATGTTGGATCTGGGTCTGCTATTGTATTGGAGCTCCTGTGTTGTTTGTGTTTGTTTTTCTCAATTGTATTTTGGTTTAGTTTGGATGGGCCTCTGCTGCCCTCTCTCTGTAATCTTGTTGGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.43

Weight (kDa)

8.27

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 347, 401, 445, 522
AclWI GGATC 2 cut(s) 357, 546
AcuI CTGAAG 1 cut(s) 230
AfaI GTAC 1 cut(s) 376
AfeI AGCGCT 1 cut(s) 253
AfiI CCNNNNNNNGG 2 cut(s) 407, 528
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 4 cut(s) 242, 440, 451, 564
AluI AGCT 4 cut(s) 242, 440, 451, 564
Alw21I GWGCWC 2 cut(s) 275, 566
Alw26I GTCTC 1 cut(s) 463
AlwI GGATC 2 cut(s) 357, 546
Aor51HI AGCGCT 1 cut(s) 253
AoxI GGCC 1 cut(s) 619
ApeKI GCWGC 1 cut(s) 627
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 619
AsuHPI GGTGA 4 cut(s) 109, 205, 313, 422
BanII GRGCYC 1 cut(s) 566
Bbv12I GWGCWC 2 cut(s) 275, 566
BbvI GCAGC 1 cut(s) 614
BccI CCATC 4 cut(s) 46, 58, 117, 610
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 255
BisI GCNGC 1 cut(s) 628
BlsI GCNGC 1 cut(s) 629
BmgT120I GGNCC 1 cut(s) 619
BmiI GGNNCC 1 cut(s) 368
BmsI GCATC 3 cut(s) 415, 503, 533
BsaI GGTCTC 1 cut(s) 463
BsaJI CCNNGG 2 cut(s) 362, 370
BsaXI ACNNNNNCTCC 2 cut(s) 553, 583
Bsc4I CCNNNNNNNGG 2 cut(s) 407, 528
BseDI CCNNGG 2 cut(s) 362, 370
BseGI GGATG 5 cut(s) 148, 357, 430, 537, 621
BseLI CCNNNNNNNGG 2 cut(s) 407, 528
BseMII CTCAG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 614
BseYI CCCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 621
BsiHKAI GWGCWC 2 cut(s) 275, 566
BslI CCNNNNNNNGG 2 cut(s) 407, 528
BsmAI GTCTC 1 cut(s) 463
BsnI GGCC 1 cut(s) 621
Bso31I GGTCTC 1 cut(s) 463
Bsp1286I GDGCHC 2 cut(s) 275, 566
Bsp143I GATC 2 cut(s) 349, 538
Bsp19I CCATGG 1 cut(s) 362
BspACI CCGC 4 cut(s) 347, 401, 445, 522
BspANI GGCC 1 cut(s) 621
BspCNI CTCAG 1 cut(s) 395
BspLI GGNNCC 1 cut(s) 368
BspPI GGATC 2 cut(s) 357, 546
BspQI GCTCTTC 3 cut(s) 249, 270, 291
BspTNI GGTCTC 1 cut(s) 463
BssECI CCNNGG 2 cut(s) 362, 370
BssMI GATC 2 cut(s) 349, 538
BssT1I CCWWGG 2 cut(s) 362, 370
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 4 cut(s) 119, 249, 270, 291
BstDEI CTNAG 1 cut(s) 382
BstDSI CCRYGG 1 cut(s) 362
BstF5I GGATG 5 cut(s) 148, 357, 430, 537, 621
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 2 cut(s) 352, 541
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 2 cut(s) 349, 538
BstMWI GCNNNNNNNGC 2 cut(s) 260, 627
BstNSI RCATGY 1 cut(s) 471
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 614
BstX2I RGATCY 2 cut(s) 349, 538
BstYI RGATCY 2 cut(s) 349, 538
BsuRI GGCC 1 cut(s) 621
BtgI CCRYGG 1 cut(s) 362
BtsCI GGATG 5 cut(s) 148, 357, 430, 537, 621
BtsIMutI CAGTG 1 cut(s) 390
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 619
Csp6I GTAC 1 cut(s) 375
CviAII CATG 3 cut(s) 66, 363, 468
CviJI RGCY 9 cut(s) 17, 45, 206, 242, 440, 451, 493, 564, 621
CviKI_1 RGCY 9 cut(s) 17, 45, 206, 242, 440, 451, 493, 564, 621
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 1 cut(s) 382
DpnI GATC 2 cut(s) 351, 540
DpnII GATC 2 cut(s) 349, 538
DraI TTTAAA 1 cut(s) 27
Eam1104I CTCTTC 4 cut(s) 119, 249, 270, 291
EarI CTCTTC 4 cut(s) 119, 249, 270, 291
Ecl136II GAGCTC 1 cut(s) 564
Eco130I CCWWGG 2 cut(s) 362, 370
Eco24I GRGCYC 1 cut(s) 566
Eco31I GGTCTC 1 cut(s) 463
Eco47III AGCGCT 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 564
Eco57I CTGAAG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 564
EcoT14I CCWWGG 2 cut(s) 362, 370
EcoT38I GRGCYC 1 cut(s) 566
ErhI CCWWGG 2 cut(s) 362, 370
FaeI CATG 3 cut(s) 69, 366, 471
FaiI YATR 7 cut(s) 33, 67, 338, 364, 437, 464, 469
FalI AAGNNNNNCTT 2 cut(s) 412, 444
FatI CATG 3 cut(s) 65, 362, 467
FauI CCCGC 2 cut(s) 408, 438
Fnu4HI GCNGC 1 cut(s) 628
FokI GGATG 5 cut(s) 135, 344, 437, 544, 628
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 1 cut(s) 628
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 253
GluI GCNGC 1 cut(s) 628
GsaI CCCAGC 1 cut(s) 242
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 1 cut(s) 621
HhaI GCGC 1 cut(s) 254
Hin1II CATG 3 cut(s) 69, 366, 471
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HphI GGTGA 4 cut(s) 109, 205, 313, 422
Hpy166II GTNNAC 3 cut(s) 235, 298, 321
Hpy188I TCNGA 2 cut(s) 249, 270
Hpy8I GTNNAC 3 cut(s) 235, 298, 321
HpyAV CCTTC 6 cut(s) 91, 95, 233, 307, 311, 414
HpyCH4III ACNGT 1 cut(s) 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 627
HpyF3I CTNAG 1 cut(s) 382
Hsp92II CATG 3 cut(s) 69, 366, 471
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 2 cut(s) 349, 538
LguI GCTCTTC 3 cut(s) 249, 270, 291
LmnI GCTCC 5 cut(s) 40, 270, 448, 561, 569
LpnPI CCDG 3 cut(s) 252, 527, 580
Lsp1109I GCAGC 1 cut(s) 614
LweI GCATC 3 cut(s) 415, 503, 533
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 410
MalI GATC 2 cut(s) 351, 540
MboI GATC 2 cut(s) 349, 538
MboII GAAGA 4 cut(s) 106, 236, 257, 278
MfeI CAATTG 1 cut(s) 593
MflI RGATCY 2 cut(s) 349, 538
MhlI GDGCHC 2 cut(s) 275, 566
MluCI AATT 2 cut(s) 329, 593
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 9 cut(s) 15, 18, 56, 86, 101, 131, 187, 632, 642
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 2 cut(s) 26, 658
MspA1I CMGCKG 1 cut(s) 403
MunI CAATTG 1 cut(s) 593
MwoI GCNNNNNNNGC 2 cut(s) 260, 627
NcoI CCATGG 1 cut(s) 362
NdeII GATC 2 cut(s) 349, 538
NlaIII CATG 3 cut(s) 69, 366, 471
NlaIV GGNNCC 1 cut(s) 368
NmeAIII GCCGAG 1 cut(s) 421
NmuCI GTSAC 1 cut(s) 410
NspI RCATGY 1 cut(s) 471
PciSI GCTCTTC 3 cut(s) 249, 270, 291
PdmI GAANNNNTTC 1 cut(s) 317
PkrI GCNGC 1 cut(s) 629
Psp124BI GAGCTC 1 cut(s) 566
PspFI CCCAGC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 368
PspPI GGNCC 1 cut(s) 619
PsuI RGATCY 2 cut(s) 349, 538
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SacI GAGCTC 1 cut(s) 566
SapI GCTCTTC 3 cut(s) 249, 270, 291
SaqAI TTAA 2 cut(s) 26, 658
SatI GCNGC 1 cut(s) 628
Sau3AI GATC 2 cut(s) 349, 538
Sau96I GGNCC 1 cut(s) 619
SduI GDGCHC 2 cut(s) 275, 566
SetI ASST 6 cut(s) 193, 244, 303, 442, 453, 566
SfaNI GCATC 3 cut(s) 415, 503, 533
SfcI CTRYAG 1 cut(s) 201
Sse9I AATT 2 cut(s) 329, 593
SsiI CCGC 4 cut(s) 347, 401, 445, 522
SspMI CTAG 1 cut(s) 42
SstI GAGCTC 1 cut(s) 566
StyI CCWWGG 2 cut(s) 362, 370
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 4 cut(s) 183, 304, 418, 511
TasI AATT 2 cut(s) 329, 593
Tru1I TTAA 2 cut(s) 26, 658
Tru9I TTAA 2 cut(s) 26, 658
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 1 cut(s) 627
Tsp45I GTSAC 1 cut(s) 410
TspRI CASTG 1 cut(s) 390
XceI RCATGY 1 cut(s) 471
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.