Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0013760

Physical Location & Seq

Genomic Coordinates Forward (+)

65779309 .. 65783831

Gene Structure 4523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG488800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAAACACCGCCGAAAGACCATCGGCTGCATCAGATCGATCTCAACCCATATTCAAATCCGGCAGCCTCAAACTCCACTAAATCTTTTTGGATATAGCGCCCTAAAGCACTGCCAACTCGACGAAGGCAACGATCAATGTGAAAAGCCGGAGAAAGTATGTCATAGAGATCTTAAGCTTGAAAATGCACTCTTAGATGACAGCACAGCACCTCGGGTGAAAATATGCGATTTTGGATCCTCAAAGTCACTACATTCTCGGCAAAAATCTACTGCGGGAACTCCGGCTTATATTGCACCTGAGGTCCTATCTGAAAAACAATATGATGGAGAGGGATCTTCACCTACTGAGGCTTTATGCCTCTTTATCTCGCCTTTCCCTTTGGAGCTTGCACCATCTAGCCTCCCATCTCCAATCCCACCATGCTCCTTCCTCTACCTCCTTTCTTTCCTCCGATTCTTCTCCCACCTCTTAACCCTTTCTCGATCCTTGATCATCATCCAAACATGTCCTATTGCTTTATCGAATCCGTCGATCTGCCTTTATCATCTACAACCACTACCACCATTGCTCTTCGGAGTGTTTACCCAGCTCTTCGGAATGTTTACCTTCGATTTACGAAGGAGTTCACCACGCAGTTTCGTTTTGTATCTGCGGATCTCACCCTTCTATGGTTACTCGGTTCTTGGTTATTTGGCACTTTCTCGGTGGTTGCTTATCTCTGGTTGTTCGGTGACAGTCGGAAGGATGCTTTTGGTACATCTCGGCTGGAGCTTTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

260

Amino Acids

29.13

Weight (kDa)

9.03

Isoelectric Point (pI)

61.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	51 - 109	9.3e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	51 - 109	1.5e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013760)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462081 RchiOBHm_Chr5g0034011
rosa_laevigata	RLG00000010186
rosa_samantha	Rh1CG079700 Rh1DG086000 Rh3AG152800 Rh3BG107700 Rh3BG176800 Rh3CG167700 Rh5AG235100 Rh5BG405200 Rh5DG242300 Rh6AG206100 Rh6BG209100 Rh7AG042500 Rh7CG488800 Rh7DG042300 Rh7DG457300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	10, 275, 655
AclWI	GGATC	5 cut(s)	231, 244, 343, 480, 665
AfaI	GTAC	1 cut(s)	759
AfiI	CCNNNNNNNGG	1 cut(s)	671
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	56, 182
AluBI	AGCT	4 cut(s)	178, 388, 592, 774
AluI	AGCT	4 cut(s)	178, 388, 592, 774
AlwI	GGATC	5 cut(s)	231, 244, 343, 480, 665
Ama87I	CYCGRG	1 cut(s)	213
ApeKI	GCWGC	2 cut(s)	27, 64
Asp700I	GAANNNNTTC	1 cut(s)	625
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	304
AsuHPI	GGTGA	5 cut(s)	229, 333, 621, 654, 745
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	304
AxyI	CCTNAGG	1 cut(s)	300
BamHI	GGATCC	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	14, 76
BccI	CCATC	4 cut(s)	29, 320, 403, 415
BclI	TGATCA	1 cut(s)	492
BfaI	CTAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	102
BfrI	CTTAAG	1 cut(s)	173
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	2 cut(s)	28, 65
BlsI	GCNGC	2 cut(s)	29, 66
Bme18I	GGWCC	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	238
BmsI	GCATC	2 cut(s)	39, 738
Bsa29I	ATCGAT	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	671
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	566
Bse8I	GATNNNNATC	1 cut(s)	497
BseCI	ATCGAT	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	2 cut(s)	498, 753
BseJI	GATNNNNATC	1 cut(s)	497
BseLI	CCNNNNNNNGG	1 cut(s)	671
BseMI	GCAATG	1 cut(s)	566
BseMII	CTCAG	2 cut(s)	291, 339
BseXI	GCAGC	2 cut(s)	14, 76
BseYI	CCCAGC	1 cut(s)	588
BshVI	ATCGAT	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	3 cut(s)	61, 149, 284
BslI	CCNNNNNNNGG	1 cut(s)	671
BsoBI	CYCGRG	1 cut(s)	213
BspACI	CCGC	3 cut(s)	10, 275, 655
BspCNI	CTCAG	2 cut(s)	292, 340
BspDI	ATCGAT	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	5 cut(s)	231, 244, 343, 480, 665
BspQI	GCTCTTC	2 cut(s)	578, 599
BspTI	CTTAAG	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	566
BssECI	CCNNGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	739
Bst6I	CTCTTC	2 cut(s)	578, 599
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	3 cut(s)	193, 300, 348
BstF5I	GGATG	2 cut(s)	498, 753
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	14, 76
BstX2I	RGATCY	4 cut(s)	169, 236, 335, 657
BstYI	RGATCY	4 cut(s)	169, 236, 335, 657
Bsu15I	ATCGAT	1 cut(s)	38
Bsu36I	CCTNAGG	1 cut(s)	300
BsuTUI	ATCGAT	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	498, 753
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	390
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	758
CviAII	CATG	2 cut(s)	423, 507
CviQI	GTAC	1 cut(s)	758
DdeI	CTNAG	3 cut(s)	193, 300, 348
Eam1104I	CTCTTC	2 cut(s)	578, 599
EarI	CTCTTC	2 cut(s)	578, 599
Eco47I	GGWCC	1 cut(s)	304
Eco81I	CCTNAGG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	304
FaeI	CATG	2 cut(s)	426, 510
FatI	CATG	2 cut(s)	422, 506
FauI	CCCGC	1 cut(s)	268
FbaI	TGATCA	1 cut(s)	492
Fnu4HI	GCNGC	2 cut(s)	28, 65
FokI	GGATG	2 cut(s)	485, 760
Fsp4HI	GCNGC	2 cut(s)	28, 65
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	2 cut(s)	28, 65
GsaI	CCCAGC	1 cut(s)	592
HaeII	RGCGCY	1 cut(s)	102
HapII	CCGG	3 cut(s)	61, 149, 284
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	426, 510
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	2 cut(s)	456, 526
HpaII	CCGG	3 cut(s)	61, 149, 284
HphI	GGTGA	5 cut(s)	229, 333, 621, 654, 745
Hpy166II	GTNNAC	3 cut(s)	585, 606, 629
Hpy188I	TCNGA	6 cut(s)	35, 313, 455, 578, 599, 743
Hpy188III	TCNNGA	1 cut(s)	483
Hpy8I	GTNNAC	3 cut(s)	585, 606, 629
Hpy99I	CGWCG	2 cut(s)	125, 535
HpyAV	CCTTC	6 cut(s)	119, 439, 615, 619, 676, 738
HpyCH4III	ACNGT	1 cut(s)	739
HpyCH4V	TGCA	4 cut(s)	30, 188, 296, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	3 cut(s)	193, 300, 348
Hsp92II	CATG	2 cut(s)	426, 510
HspAI	GCGC	1 cut(s)	99
Ksp22I	TGATCA	1 cut(s)	492
LguI	GCTCTTC	2 cut(s)	578, 599
LmnI	GCTCC	3 cut(s)	385, 431, 771
LpnPI	CCDG	7 cut(s)	74, 162, 297, 312, 602, 708, 754
Lsp1109I	GCAGC	2 cut(s)	14, 76
LweI	GCATC	2 cut(s)	39, 738
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	3 cut(s)	246, 674, 733
MboII	GAAGA	4 cut(s)	330, 451, 565, 586
MflI	RGATCY	4 cut(s)	169, 236, 335, 657
MmeI	TCCRAC	1 cut(s)	721
MroXI	GAANNNNTTC	1 cut(s)	625
MseI	TTAA	2 cut(s)	174, 473
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	3 cut(s)	61, 149, 284
MwoI	GCNNNNNNNGC	1 cut(s)	293
NlaIII	CATG	2 cut(s)	426, 510
NlaIV	GGNNCC	1 cut(s)	238
NmeAIII	GCCGAG	2 cut(s)	238, 744
NmuCI	GTSAC	2 cut(s)	246, 733
NspI	RCATGY	1 cut(s)	510
PciI	ACATGT	1 cut(s)	506
PciSI	GCTCTTC	2 cut(s)	578, 599
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 530
PdmI	GAANNNNTTC	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	456, 526
PkrI	GCNGC	2 cut(s)	29, 66
PpuMI	RGGWCCY	1 cut(s)	304
PscI	ACATGT	1 cut(s)	506
Psp5II	RGGWCCY	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	588
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	304
PspPPI	RGGWCCY	1 cut(s)	304
PsuI	RGATCY	4 cut(s)	169, 236, 335, 657
RsaI	GTAC	1 cut(s)	759
RsaNI	GTAC	1 cut(s)	758
SapI	GCTCTTC	2 cut(s)	578, 599
SaqAI	TTAA	2 cut(s)	174, 473
SatI	GCNGC	2 cut(s)	28, 65
Sau96I	GGNCC	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	39, 738
SinI	GGWCC	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SsiI	CCGC	3 cut(s)	10, 275, 655
SspMI	CTAG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	739
TaqI	TCGA	6 cut(s)	38, 120, 484, 524, 533, 612
TfiI	GAWTC	2 cut(s)	456, 526
Tru1I	TTAA	2 cut(s)	174, 473
Tru9I	TTAA	2 cut(s)	174, 473
TscAI	CASTG	1 cut(s)	116
TseFI	GTSAC	2 cut(s)	246, 733
TseI	GCWGC	2 cut(s)	27, 64
Tsp45I	GTSAC	2 cut(s)	246, 733
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	519
TspRI	CASTG	1 cut(s)	116
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	304
XceI	RCATGY	1 cut(s)	510
XmnI	GAANNNNTTC	1 cut(s)	625
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.