Rh7DG457300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013760
Physical Location & Seq
Forward (+)
65065922 .. 65066440
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG457300.1

Sequence Viewer

Length: 519 bp
ATGCTCCTTCCTCTACCTCCTTTCTTTCCTCCGATTCTTCTCCCACCTCTTAACCCTTTCTCGATCCTTGATCATCATCCAAACATGTCCTATTGCTTTATCGAATCCGTCGATCTGCCTTTATCATCTACAACCACTACCACCATTGCTCTTCGGAGTGTTTACCCAGCTCTTCGGAATGTTTACCTTCGATTTACGAAGGAGTTCACCACGCAGTTTCGTTTTGTATCTGCGGATCTCACCCTTCTATGGTTACTCGGTTCTTGGTTATTTGGCACTTTCTCGGTGGTTGCTTATCTCTGGTTGTTCGGTGACAGTCGGAAGGATGCTTTTGGTACATCTCGGCTGGAGCTTTGGGTAGATATGGCATATATTGGTTGCTGGTTTTTCTGGATCATTTATGTCTTTATGTGTTGCCTTATTTTCATCGTGTATTTTGGACCTGGGGGTGCTGTAGTCTTGGGGCTTTGTTGTTGTTTGTTATCATTTTTTCTTAGATCTGTTTGGTCTAGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.76

Weight (kDa)

6.68

Isoelectric Point (pI)

52.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 233
AclWI GGATC 3 cut(s) 58, 243, 401
AfaI GTAC 1 cut(s) 337
AfiI CCNNNNNNNGG 1 cut(s) 249
AflIII ACRYGT 1 cut(s) 84
AjnI CCWGG 1 cut(s) 442
AluBI AGCT 2 cut(s) 170, 352
AluI AGCT 2 cut(s) 170, 352
AlwI GGATC 3 cut(s) 58, 243, 401
Asp700I GAANNNNTTC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 440
AsuHPI GGTGA 3 cut(s) 199, 232, 323
AvaII GGWCC 1 cut(s) 440
BciT130I CCWGG 1 cut(s) 444
BclI TGATCA 1 cut(s) 70
BfaI CTAG 1 cut(s) 510
BfmI CTRYAG 1 cut(s) 453
BglII AGATCT 1 cut(s) 497
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 440
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 316
BpmI CTGGAG 1 cut(s) 368
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 443
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 443
BseGI GGATG 2 cut(s) 76, 331
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMI GCAATG 1 cut(s) 144
BseYI CCCAGC 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 249
Bsp143I GATC 6 cut(s) 63, 70, 112, 235, 393, 497
BspACI CCGC 1 cut(s) 233
BspPI GGATC 3 cut(s) 58, 243, 401
BspQI GCTCTTC 2 cut(s) 156, 177
BsrDI GCAATG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 443
BssMI GATC 6 cut(s) 63, 70, 112, 235, 393, 497
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 2 cut(s) 156, 177
BstDEI CTNAG 1 cut(s) 494
BstF5I GGATG 2 cut(s) 76, 331
BstKTI GATC 6 cut(s) 66, 73, 115, 238, 396, 500
BstMBI GATC 6 cut(s) 63, 70, 112, 235, 393, 497
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 1 cut(s) 453
BstX2I RGATCY 2 cut(s) 235, 497
BstYI RGATCY 2 cut(s) 235, 497
BtsCI GGATG 2 cut(s) 76, 331
Cfr13I GGNCC 1 cut(s) 440
Csp6I GTAC 1 cut(s) 336
CviAII CATG 1 cut(s) 85
CviJI RGCY 4 cut(s) 170, 346, 352, 466
CviKI_1 RGCY 4 cut(s) 170, 346, 352, 466
CviQI GTAC 1 cut(s) 336
DdeI CTNAG 1 cut(s) 494
DpnI GATC 6 cut(s) 65, 72, 114, 237, 395, 499
DpnII GATC 6 cut(s) 63, 70, 112, 235, 393, 497
Eam1104I CTCTTC 2 cut(s) 156, 177
EarI CTCTTC 2 cut(s) 156, 177
Eco47I GGWCC 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 442
FaeI CATG 1 cut(s) 88
FaiI YATR 7 cut(s) 86, 250, 365, 370, 372, 402, 410
FatI CATG 1 cut(s) 84
FbaI TGATCA 1 cut(s) 70
FokI GGATG 2 cut(s) 63, 338
FspBI CTAG 1 cut(s) 510
GsaI CCCAGC 1 cut(s) 170
GsuI CTGGAG 1 cut(s) 368
Hin1II CATG 1 cut(s) 88
HinfI GANTC 2 cut(s) 34, 104
HphI GGTGA 3 cut(s) 199, 232, 323
Hpy166II GTNNAC 3 cut(s) 163, 184, 207
Hpy188I TCNGA 4 cut(s) 33, 156, 177, 321
Hpy188III TCNNGA 2 cut(s) 61, 391
Hpy8I GTNNAC 3 cut(s) 163, 184, 207
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 5 cut(s) 17, 193, 197, 254, 316
HpyCH4III ACNGT 1 cut(s) 317
HpyF3I CTNAG 1 cut(s) 494
Hsp92II CATG 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 6 cut(s) 63, 70, 112, 235, 393, 497
LguI GCTCTTC 2 cut(s) 156, 177
LmnI GCTCC 2 cut(s) 9, 349
LpnPI CCDG 7 cut(s) 180, 286, 332, 367, 376, 429, 456
LweI GCATC 1 cut(s) 316
MaeI CTAG 1 cut(s) 510
MaeIII GTNAC 2 cut(s) 252, 311
MalI GATC 6 cut(s) 65, 72, 114, 237, 395, 499
MboI GATC 6 cut(s) 63, 70, 112, 235, 393, 497
MboII GAAGA 3 cut(s) 29, 143, 164
MflI RGATCY 2 cut(s) 235, 497
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 4 cut(s) 21, 27, 39, 57
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 444
NdeII GATC 6 cut(s) 63, 70, 112, 235, 393, 497
NlaIII CATG 1 cut(s) 88
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 311
NspI RCATGY 1 cut(s) 88
PciI ACATGT 1 cut(s) 84
PciSI GCTCTTC 2 cut(s) 156, 177
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 34, 104
PscI ACATGT 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 442
PspFI CCCAGC 1 cut(s) 166
PspGI CCWGG 1 cut(s) 442
PspPI GGNCC 1 cut(s) 440
PsuI RGATCY 2 cut(s) 235, 497
RsaI GTAC 1 cut(s) 337
RsaNI GTAC 1 cut(s) 336
SapI GCTCTTC 2 cut(s) 156, 177
SaqAI TTAA 1 cut(s) 51
Sau3AI GATC 6 cut(s) 63, 70, 112, 235, 393, 497
Sau96I GGNCC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 444
SetI ASST 6 cut(s) 19, 49, 172, 189, 354, 445
SfaNI GCATC 1 cut(s) 316
SfcI CTRYAG 1 cut(s) 453
SinI GGWCC 1 cut(s) 440
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 510
StyD4I CCNGG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 317
TaqI TCGA 4 cut(s) 62, 102, 111, 190
TfiI GAWTC 2 cut(s) 34, 104
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TseFI GTSAC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 415
TspGWI ACGGA 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 440
XceI RCATGY 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.