Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013760

Physical Location & Seq

Genomic Coordinates Forward (+)

63954088 .. 63955324

Gene Structure 1237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010186

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCTCTTATCTCGGCTTTCCCTTTGGAGTCTGCACCATCTAGCCTCCCATCTCTACTCCTACCATGCTCCTTCCTCTACCTCCTTTCTTTCCTCCGATTCTTCTCCCACCTCTTAACCCTTTCTCTGTTGTTGATCCTTGATCATCATCTAAACATGTCCTATTGCTCTATCGAATCCGTCGATTTGCCTTTATCATCTACAATCACGATCACCATTGCTCTTCGGAGCGTTTACCCAGCTCTTCAGAGCTCTGCTCTTCAGAGTGTTTACCTTGCTCTTCGAAGGGTTTACCTTCGATTTACGAAGGAGTTCACCACGCAGTTACATTTCGTATCTGCGGATCTCACCCTTCCATGGTTACTCGATTCTAGGTTCTTTGGCATTCTCTCGGTGGCTGCTTATCTCTGGCTATTCGGTGACAGTCAGAGGGATGCTTTTGGTACATCTTGGCGGGAGCTTTGGGTAGATATGGGGTATATTGGTTGCTGGTTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.97

Weight (kDa)

6.02

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013760)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462081 RchiOBHm_Chr5g0034011
rosa_laevigata	RLG00000010186
rosa_samantha	Rh1CG079700 Rh1DG086000 Rh3AG152800 Rh3BG107700 Rh3BG176800 Rh3CG167700 Rh5AG235100 Rh5BG405200 Rh5DG242300 Rh6AG206100 Rh6BG209100 Rh7AG042500 Rh7CG488800 Rh7DG042300 Rh7DG457300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	341, 454
AclWI	GGATC	2 cut(s)	130, 351
AcuI	CTGAAG	2 cut(s)	230, 245
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	1 cut(s)	357
AflIII	ACRYGT	1 cut(s)	156
AluBI	AGCT	3 cut(s)	242, 252, 460
AluI	AGCT	3 cut(s)	242, 252, 460
Alw21I	GWGCWC	1 cut(s)	254
AlwI	GGATC	2 cut(s)	130, 351
ApeKI	GCWGC	1 cut(s)	398
Asp700I	GAANNNNTTC	1 cut(s)	311
AsuHPI	GGTGA	4 cut(s)	205, 307, 340, 431
AsuII	TTCGAA	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	2 cut(s)	46, 58
BclI	TGATCA	1 cut(s)	142
BfaI	CTAG	3 cut(s)	42, 372, 499
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
BmsI	GCATC	1 cut(s)	424
BplI	GAGNNNNNCTC	2 cut(s)	241, 273
Bpu14I	TTCGAA	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	1 cut(s)	439
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	385
BseYI	CCCAGC	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	384
Bsp119I	TTCGAA	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	4 cut(s)	135, 142, 210, 343
Bsp19I	CCATGG	1 cut(s)	356
BspACI	CCGC	2 cut(s)	341, 454
BspPI	GGATC	2 cut(s)	130, 351
BspQI	GCTCTTC	4 cut(s)	228, 249, 264, 285
BspT104I	TTCGAA	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	4 cut(s)	135, 142, 210, 343
BssT1I	CCWWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	4 cut(s)	228, 249, 264, 285
BstBI	TTCGAA	1 cut(s)	283
BstDSI	CCRYGG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	439
BstKTI	GATC	4 cut(s)	138, 145, 213, 346
BstMBI	GATC	4 cut(s)	135, 142, 210, 343
BstNSI	RCATGY	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	385
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	3 cut(s)	66, 157, 357
CviJI	RGCY	7 cut(s)	17, 45, 242, 252, 398, 412, 460
CviKI_1	RGCY	7 cut(s)	17, 45, 242, 252, 398, 412, 460
CviQI	GTAC	1 cut(s)	444
DpnI	GATC	4 cut(s)	137, 144, 212, 345
DpnII	GATC	4 cut(s)	135, 142, 210, 343
Eam1104I	CTCTTC	4 cut(s)	228, 249, 264, 285
EarI	CTCTTC	4 cut(s)	228, 249, 264, 285
Ecl136II	GAGCTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	252
Eco57I	CTGAAG	2 cut(s)	230, 245
EcoICRI	GAGCTC	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	3 cut(s)	69, 160, 360
FaiI	YATR	5 cut(s)	67, 158, 358, 473, 480
FatI	CATG	3 cut(s)	65, 156, 356
FauI	CCCGC	1 cut(s)	447
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	3 cut(s)	42, 372, 499
GluI	GCNGC	1 cut(s)	399
GsaI	CCCAGC	1 cut(s)	242
Hin1II	CATG	3 cut(s)	69, 160, 360
HinfI	GANTC	4 cut(s)	29, 99, 176, 368
HphI	GGTGA	4 cut(s)	205, 307, 340, 431
Hpy166II	GTNNAC	4 cut(s)	235, 271, 292, 315
Hpy188I	TCNGA	5 cut(s)	98, 228, 249, 264, 429
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	4 cut(s)	235, 271, 292, 315
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	5 cut(s)	82, 279, 301, 305, 362
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	69, 160, 360
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	135, 142, 210, 343
LguI	GCTCTTC	4 cut(s)	228, 249, 264, 285
LmnI	GCTCC	3 cut(s)	74, 228, 457
LpnPI	CCDG	3 cut(s)	252, 394, 475
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	3 cut(s)	42, 372, 499
MaeIII	GTNAC	3 cut(s)	324, 360, 419
MalI	GATC	4 cut(s)	137, 144, 212, 345
MboI	GATC	4 cut(s)	135, 142, 210, 343
MboII	GAAGA	5 cut(s)	94, 215, 236, 251, 272
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	7 cut(s)	15, 56, 86, 92, 104, 122, 423
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	384
NcoI	CCATGG	1 cut(s)	356
NdeII	GATC	4 cut(s)	135, 142, 210, 343
NlaIII	CATG	3 cut(s)	69, 160, 360
NmuCI	GTSAC	1 cut(s)	419
NspI	RCATGY	1 cut(s)	160
NspV	TTCGAA	1 cut(s)	283
PciI	ACATGT	1 cut(s)	156
PciSI	GCTCTTC	4 cut(s)	228, 249, 264, 285
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	1 cut(s)	384
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	99, 176, 368
PkrI	GCNGC	1 cut(s)	400
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PscI	ACATGT	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	254
SapI	GCTCTTC	4 cut(s)	228, 249, 264, 285
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	4 cut(s)	135, 142, 210, 343
SchI	GAGTC	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	8 cut(s)	84, 114, 244, 254, 276, 297, 377, 462
SfaNI	GCATC	1 cut(s)	424
SfuI	TTCGAA	1 cut(s)	283
SsiI	CCGC	2 cut(s)	341, 454
SspMI	CTAG	3 cut(s)	42, 372, 499
SstI	GAGCTC	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	425
TaqI	TCGA	5 cut(s)	174, 183, 283, 298, 366
TfiI	GAWTC	3 cut(s)	99, 176, 368
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	1 cut(s)	419
TspGWI	ACGGA	1 cut(s)	169
XceI	RCATGY	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	3 cut(s)	42, 372, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.