Rh6AG206100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013760
Physical Location & Seq
Forward (+)
36808332 .. 36809367
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG206100.1

Sequence Viewer

Length: 465 bp
ATGGTATTTGCGGATCTCATCATCCCATGGTTCCTTGGTTCTTTCTCGGTGGTTGCTTATCTCCTGTTTTTCGGTGACAATCAAAGGGATGCTTTTGGTACAGCTCAACGGGAGCTTTGGGTCTCTATGGCATGTTTTGGTTGCTGGTTTCTTGGGTTTGTTTGTGTCCTTGTTCGATGCCTTTTCCGCATCGTGGATGTTGGATCTGGGTATGCTATTGTATTGGAGCTCATGTGTTGTTTGTGTTCATTTTTCTCAATTTTATTTGGTTTAGTTTGGATATATGGGACTCTGCTGCCCTCTCTCTGTAATCTTGTTGGTTGTTTAATGAAGTTGTTTCCCTTGCCAAAAAAAAAAAAAAAAAAACCATATCCACAGGGCTTATACAATGTTCTCCTTCTTGATTACTTAGAGGATGAGAAGTTCCTTATGTTCATTCACTCATCTTTGCTTACATTCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.64

Weight (kDa)

8.06

Isoelectric Point (pI)

25.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 11, 187
AclWI GGATC 2 cut(s) 21, 211
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 193
AloI GAACNNNNNNTCC 2 cut(s) 407, 439
AluBI AGCT 3 cut(s) 104, 115, 229
AluI AGCT 3 cut(s) 104, 115, 229
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 2 cut(s) 21, 211
ApeKI GCWGC 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 86
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 127
BfmI CTRYAG 1 cut(s) 461
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 32
BmsI GCATC 3 cut(s) 79, 167, 198
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 26, 34
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 26, 34
BseGI GGATG 4 cut(s) 21, 94, 202, 421
BseLI CCNNNNNNNGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 231
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 301
Bso31I GGTCTC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 13, 203
Bsp19I CCATGG 1 cut(s) 26
BspACI CCGC 2 cut(s) 11, 187
BspLI GGNNCC 1 cut(s) 32
BspPI GGATC 2 cut(s) 21, 211
BspTNI GGTCTC 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 26, 34
BssMI GATC 2 cut(s) 13, 203
BssT1I CCWWGG 2 cut(s) 26, 34
BstDEI CTNAG 1 cut(s) 409
BstDSI CCRYGG 1 cut(s) 26
BstF5I GGATG 4 cut(s) 21, 94, 202, 421
BstKTI GATC 2 cut(s) 16, 206
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 2 cut(s) 13, 203
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 461
BstV1I GCAGC 1 cut(s) 282
BstX2I RGATCY 2 cut(s) 13, 203
BstYI RGATCY 2 cut(s) 13, 203
BtgI CCRYGG 1 cut(s) 26
BtsCI GGATG 4 cut(s) 21, 94, 202, 421
Csp6I GTAC 1 cut(s) 99
CviAII CATG 3 cut(s) 27, 132, 232
CviJI RGCY 4 cut(s) 104, 115, 229, 381
CviKI_1 RGCY 4 cut(s) 104, 115, 229, 381
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 1 cut(s) 409
DpnI GATC 2 cut(s) 15, 205
DpnII GATC 2 cut(s) 13, 203
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 2 cut(s) 26, 34
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoT14I CCWWGG 2 cut(s) 26, 34
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 2 cut(s) 26, 34
FaeI CATG 3 cut(s) 30, 135, 235
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FaqI GGGAC 1 cut(s) 301
FatI CATG 3 cut(s) 26, 131, 231
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 4 cut(s) 8, 101, 209, 428
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 296
Hin1II CATG 3 cut(s) 30, 135, 235
HinfI GANTC 1 cut(s) 289
HphI GGTGA 1 cut(s) 86
Hpy188III TCNNGA 1 cut(s) 401
HpyAV CCTTC 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 1 cut(s) 409
Hsp92II CATG 3 cut(s) 30, 135, 235
Kzo9I GATC 2 cut(s) 13, 203
LmnI GCTCC 2 cut(s) 112, 226
LpnPI CCDG 4 cut(s) 77, 130, 192, 362
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 3 cut(s) 79, 167, 198
MaeIII GTNAC 1 cut(s) 74
MalI GATC 2 cut(s) 15, 205
MboI GATC 2 cut(s) 13, 203
MflI RGATCY 2 cut(s) 13, 203
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 258
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 2 cut(s) 310, 406
MseI TTAA 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 186
NcoI CCATGG 1 cut(s) 26
NdeII GATC 2 cut(s) 13, 203
NlaIII CATG 3 cut(s) 30, 135, 235
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 135
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Psp124BI GAGCTC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 32
PsuI RGATCY 2 cut(s) 13, 203
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 2 cut(s) 13, 203
SchI GAGTC 1 cut(s) 283
SduI GDGCHC 1 cut(s) 231
SetI ASST 3 cut(s) 106, 117, 231
SfaNI GCATC 3 cut(s) 79, 167, 198
SfcI CTRYAG 1 cut(s) 461
Sse9I AATT 1 cut(s) 258
SsiI CCGC 2 cut(s) 11, 187
SstI GAGCTC 1 cut(s) 231
StyI CCWWGG 2 cut(s) 26, 34
TaqI TCGA 1 cut(s) 175
TasI AATT 1 cut(s) 258
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 3 cut(s) 237, 344, 424
XceI RCATGY 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.