RchiOBHm_Chr5g0067541

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016414
Physical Location & Seq
Reverse (-)
73679014 .. 73679679
666 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34323

Sequence Viewer

Length: 444 bp
ATGGTAGAATTTTGGGCAGTACCTGAAAGGAGTTTGATTAATTTATTTTATTTTATATATATTTTATTTCATACAACAGTTATAACTTCAGGAAAATTCTACAGTACTGGGGTATCCCATACCGGGCGTTTTGTGAATATTTGTGACCGTTGGATCGGTAATATATCCAAGGGTCATGGATATTCGAAACAAGCTAACCTATTGAGAAGGTATCCCGTTTCGCCGTCACTCTCAGTTCGTCACCGTGCCTCCAGCGTCGGGCCTCCCTGCGCGGCGCTCCTCCGCTTCGCTGTGCTACCACGACTCTCGCTCTCTCTCTGCGCTACTCTGCCTCAGTCTCCCTCTGTTCCACCGCGCCCCTCCACTCCACTGCTCCTCCAGTCCTCTTCAACCTCTCTCCTTGACCGTCGAGGCGTCGACAGCCCTTTCTATACCCGACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.43

Weight (kDa)

10.68

Isoelectric Point (pI)

78.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
AccI GTMKAC 1 cut(s) 417
AccII CGCG 2 cut(s) 272, 355
AciI CCGC 3 cut(s) 272, 283, 353
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 2 cut(s) 8, 95
AcuI CTGAAG 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 2 cut(s) 21, 106
AfiI CCNNNNNNNGG 2 cut(s) 123, 258
AgsI TTSAA 1 cut(s) 390
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 342
AlwI GGATC 1 cut(s) 161
AlwNI CAGNNNCTG 1 cut(s) 23
AoxI GGCC 1 cut(s) 260
ApoI RAATTY 2 cut(s) 8, 95
AseI ATTAAT 1 cut(s) 39
AspLEI GCGC 4 cut(s) 272, 277, 323, 357
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 233
AsuII TTCGAA 1 cut(s) 185
BaeI ACNNNNGTAYC 2 cut(s) 96, 129
BceAI ACGGC 1 cut(s) 208
BciVI GTATCC 2 cut(s) 124, 222
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 100
BfoI RGCGCY 1 cut(s) 278
BfuI GTATCC 2 cut(s) 124, 222
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmcAI AGTACT 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 117
BpmI CTGGAG 2 cut(s) 235, 362
Bpu14I TTCGAA 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 360, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 258
Bse1I ACTGG 2 cut(s) 112, 379
BseDI CCNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 2 cut(s) 123, 258
BseMII CTCAG 2 cut(s) 246, 347
BseNI ACTGG 2 cut(s) 112, 379
BseRI GAGGAG 2 cut(s) 269, 365
Bsh1236I CGCG 2 cut(s) 272, 355
BshFI GGCC 1 cut(s) 262
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 2 cut(s) 123, 258
BsmAI GTCTC 1 cut(s) 342
BsnI GGCC 1 cut(s) 262
Bsp119I TTCGAA 1 cut(s) 185
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 3 cut(s) 272, 283, 353
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 2 cut(s) 245, 346
BspFNI CGCG 2 cut(s) 272, 355
BspPI GGATC 1 cut(s) 161
BspT104I TTCGAA 1 cut(s) 185
BsrI ACTGG 2 cut(s) 112, 379
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 1 cut(s) 153
BssNI GRCGYC 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 6 cut(s) 79, 104, 149, 245, 407, 441
Bst6I CTCTTC 1 cut(s) 391
BstACI GRCGYC 1 cut(s) 414
BstBI TTCGAA 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 232, 333
BstFNI CGCG 2 cut(s) 272, 355
BstH2I RGCGCY 1 cut(s) 278
BstHHI GCGC 4 cut(s) 272, 277, 323, 357
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 100
BstUI CGCG 2 cut(s) 272, 355
BsuI GTATCC 2 cut(s) 124, 222
BsuRI GGCC 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 368
CaiI CAGNNNCTG 1 cut(s) 23
CfoI GCGC 4 cut(s) 272, 277, 323, 357
Cfr13I GGNCC 1 cut(s) 260
CseI GACGC 2 cut(s) 244, 403
Csp6I GTAC 2 cut(s) 20, 105
CviAII CATG 1 cut(s) 176
CviJI RGCY 3 cut(s) 194, 262, 423
CviKI_1 RGCY 3 cut(s) 194, 262, 423
CviQI GTAC 2 cut(s) 20, 105
DdeI CTNAG 2 cut(s) 232, 333
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 179
FaiI YATR 9 cut(s) 56, 58, 60, 72, 83, 120, 164, 177, 432
FatI CATG 1 cut(s) 175
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 273
GlaI GCGC 4 cut(s) 271, 276, 322, 356
GluI GCNGC 1 cut(s) 273
GsuI CTGGAG 2 cut(s) 235, 362
HaeII RGCGCY 1 cut(s) 278
HaeIII GGCC 1 cut(s) 262
HapII CCGG 1 cut(s) 123
HgaI GACGC 2 cut(s) 244, 403
HhaI GCGC 4 cut(s) 272, 277, 323, 357
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 1 cut(s) 179
Hin6I GCGC 4 cut(s) 270, 275, 321, 355
HinP1I GCGC 4 cut(s) 270, 275, 321, 355
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 1 cut(s) 303
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 418
Hpy188III TCNNGA 1 cut(s) 90
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 4 cut(s) 260, 411, 419, 441
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 6 cut(s) 79, 104, 149, 245, 407, 441
HpyF10VI GCNNNNNNNGC 1 cut(s) 420
HpyF3I CTNAG 2 cut(s) 232, 333
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 1 cut(s) 179
HspAI GCGC 4 cut(s) 270, 275, 321, 355
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 2 cut(s) 282, 378
LpnPI CCDG 7 cut(s) 36, 75, 93, 136, 265, 280, 392
MaeIII GTNAC 3 cut(s) 143, 225, 239
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 1 cut(s) 378
MluCI AATT 3 cut(s) 8, 40, 95
MlyI GAGTC 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 131
MseI TTAA 1 cut(s) 39
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 124
MteI GCGCNGCGC 1 cut(s) 273
MvnI CGCG 2 cut(s) 272, 355
MwoI GCNNNNNNNGC 1 cut(s) 420
NciI CCSGG 1 cut(s) 124
NdeII GATC 1 cut(s) 153
NlaIII CATG 1 cut(s) 179
NmuCI GTSAC 3 cut(s) 143, 225, 239
NspV TTCGAA 1 cut(s) 185
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
PshBI ATTAAT 1 cut(s) 39
PsiI TTATAA 1 cut(s) 83
PspPI GGNCC 1 cut(s) 260
PstNI CAGNNNCTG 1 cut(s) 23
RsaI GTAC 2 cut(s) 21, 106
RsaNI GTAC 2 cut(s) 20, 105
SalI GTCGAC 1 cut(s) 416
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 260
ScaI AGTACT 1 cut(s) 106
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 1 cut(s) 124
SetI ASST 5 cut(s) 25, 196, 201, 212, 395
SfcI CTRYAG 1 cut(s) 100
SfuI TTCGAA 1 cut(s) 185
Sse9I AATT 3 cut(s) 8, 40, 95
SsiI CCGC 3 cut(s) 272, 283, 353
SspI AATATT 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 6 cut(s) 79, 104, 149, 245, 407, 441
TaqI TCGA 3 cut(s) 185, 409, 417
TasI AATT 3 cut(s) 8, 40, 95
TatI WGTACW 1 cut(s) 104
TauI GCSGC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 3 cut(s) 143, 225, 239
Tsp45I GTSAC 3 cut(s) 143, 225, 239
TspDTI ATGAA 1 cut(s) 59
TspRI CASTG 1 cut(s) 375
VspI ATTAAT 1 cut(s) 39
XapI RAATTY 2 cut(s) 8, 95
XmiI GTMKAC 1 cut(s) 417
ZrmI AGTACT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.