E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD05G1232900.v1.1 |
| rosa_chinensis | RchiOBHm_Chr1g0336021 RchiOBHm_Chr5g0067541 |
| rosa_multiflora | Rmu_sc0000312.1_g000019 |
| rosa_roxburghii | Rroxscaffold_2G00153200 Rroxscaffold_4G00289060 Rroxscaffold_6G00420680 |
| rosa_rugosa | Rorug01G0072300 Rorug02G0054200 Rorug07G0150000 |
| rosa_samantha | Rh1AG006200 Rh2CG362300 Rh4AG348700 Rh4DG351200 Rh6DG149000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 266 |
| AgsI | TTSAA | 2 cut(s) | 201, 342 |
| AjnI | CCWGG | 1 cut(s) | 312 |
| AluBI | AGCT | 4 cut(s) | 56, 64, 98, 142 |
| AluI | AGCT | 4 cut(s) | 56, 64, 98, 142 |
| ApoI | RAATTY | 1 cut(s) | 266 |
| AspS9I | GGNCC | 1 cut(s) | 309 |
| AsuC2I | CCSGG | 1 cut(s) | 262 |
| AsuHPI | GGTGA | 1 cut(s) | 225 |
| AvaII | GGWCC | 1 cut(s) | 309 |
| BccI | CCATC | 1 cut(s) | 244 |
| BciT130I | CCWGG | 1 cut(s) | 314 |
| BcnI | CCSGG | 1 cut(s) | 262 |
| BfaI | CTAG | 1 cut(s) | 53 |
| BfmI | CTRYAG | 1 cut(s) | 103 |
| Bme1390I | CCNGG | 2 cut(s) | 262, 314 |
| Bme18I | GGWCC | 1 cut(s) | 309 |
| BmgT120I | GGNCC | 1 cut(s) | 309 |
| BmiI | GGNNCC | 2 cut(s) | 310, 311 |
| BmrFI | CCNGG | 2 cut(s) | 262, 314 |
| BpuMI | CCSGG | 1 cut(s) | 262 |
| BsaBI | GATNNNNATC | 1 cut(s) | 323 |
| BsaJI | CCNNGG | 1 cut(s) | 312 |
| BsaWI | WCCGGW | 1 cut(s) | 33 |
| Bse1I | ACTGG | 1 cut(s) | 295 |
| Bse8I | GATNNNNATC | 1 cut(s) | 323 |
| BseBI | CCWGG | 1 cut(s) | 314 |
| BseDI | CCNNGG | 1 cut(s) | 312 |
| BseJI | GATNNNNATC | 1 cut(s) | 323 |
| BseMII | CTCAG | 1 cut(s) | 294 |
| BseNI | ACTGG | 1 cut(s) | 295 |
| BsiSI | CCGG | 2 cut(s) | 34, 261 |
| BslFI | GGGAC | 1 cut(s) | 322 |
| BsmFI | GGGAC | 1 cut(s) | 322 |
| BsmI | GAATGC | 1 cut(s) | 206 |
| Bsp143I | GATC | 2 cut(s) | 49, 223 |
| BspCNI | CTCAG | 1 cut(s) | 295 |
| BspHI | TCATGA | 1 cut(s) | 46 |
| BspLI | GGNNCC | 2 cut(s) | 310, 311 |
| BspMAI | CTGCAG | 1 cut(s) | 107 |
| BsrI | ACTGG | 1 cut(s) | 295 |
| BssECI | CCNNGG | 1 cut(s) | 312 |
| BssMI | GATC | 2 cut(s) | 49, 223 |
| Bst2UI | CCWGG | 1 cut(s) | 314 |
| BstDEI | CTNAG | 1 cut(s) | 303 |
| BstKTI | GATC | 2 cut(s) | 52, 226 |
| BstMBI | GATC | 2 cut(s) | 49, 223 |
| BstNI | CCWGG | 1 cut(s) | 314 |
| BstSCI | CCNGG | 2 cut(s) | 260, 312 |
| BstSFI | CTRYAG | 1 cut(s) | 103 |
| BtsI | GCAGTG | 1 cut(s) | 112 |
| BtsIMutI | CAGTG | 2 cut(s) | 112, 288 |
| CciI | TCATGA | 1 cut(s) | 46 |
| Cfr13I | GGNCC | 1 cut(s) | 309 |
| CviAII | CATG | 2 cut(s) | 47, 116 |
| CviJI | RGCY | 7 cut(s) | 56, 64, 79, 90, 98, 142, 244 |
| CviKI_1 | RGCY | 7 cut(s) | 56, 64, 79, 90, 98, 142, 244 |
| DdeI | CTNAG | 1 cut(s) | 303 |
| DpnI | GATC | 2 cut(s) | 51, 225 |
| DpnII | GATC | 2 cut(s) | 49, 223 |
| Eco32I | GATATC | 1 cut(s) | 231 |
| Eco47I | GGWCC | 1 cut(s) | 309 |
| EcoO109I | RGGNCCY | 1 cut(s) | 309 |
| EcoRII | CCWGG | 1 cut(s) | 312 |
| EcoRV | GATATC | 1 cut(s) | 231 |
| EcoT22I | ATGCAT | 1 cut(s) | 208 |
| FaeI | CATG | 2 cut(s) | 50, 119 |
| FaiI | YATR | 8 cut(s) | 17, 48, 68, 75, 117, 182, 213, 352 |
| FaqI | GGGAC | 1 cut(s) | 322 |
| FatI | CATG | 2 cut(s) | 46, 115 |
| FspBI | CTAG | 1 cut(s) | 53 |
| HapII | CCGG | 2 cut(s) | 34, 261 |
| Hin1II | CATG | 2 cut(s) | 50, 119 |
| HpaII | CCGG | 2 cut(s) | 34, 261 |
| HphI | GGTGA | 1 cut(s) | 225 |
| Hpy188I | TCNGA | 3 cut(s) | 228, 276, 304 |
| Hpy188III | TCNNGA | 2 cut(s) | 47, 137 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 105, 206 |
| HpyF3I | CTNAG | 1 cut(s) | 303 |
| Hsp92II | CATG | 2 cut(s) | 50, 119 |
| KflI | GGGWCCC | 1 cut(s) | 309 |
| Kzo9I | GATC | 2 cut(s) | 49, 223 |
| LpnPI | CCDG | 6 cut(s) | 47, 93, 274, 276, 299, 326 |
| MaeI | CTAG | 1 cut(s) | 53 |
| MalI | GATC | 2 cut(s) | 51, 225 |
| MboI | GATC | 2 cut(s) | 49, 223 |
| MboII | GAAGA | 1 cut(s) | 125 |
| MluCI | AATT | 4 cut(s) | 219, 248, 266, 284 |
| MnlI | CCTC | 4 cut(s) | 41, 149, 298, 328 |
| Mph1103I | ATGCAT | 1 cut(s) | 208 |
| MseI | TTAA | 3 cut(s) | 255, 270, 321 |
| MslI | CAYNNNNRTG | 1 cut(s) | 182 |
| MspI | CCGG | 2 cut(s) | 34, 261 |
| MspR9I | CCNGG | 2 cut(s) | 262, 314 |
| Mva1269I | GAATGC | 1 cut(s) | 206 |
| MvaI | CCWGG | 1 cut(s) | 314 |
| NciI | CCSGG | 1 cut(s) | 262 |
| NdeII | GATC | 2 cut(s) | 49, 223 |
| NlaIII | CATG | 2 cut(s) | 50, 119 |
| NlaIV | GGNNCC | 2 cut(s) | 310, 311 |
| NsiI | ATGCAT | 1 cut(s) | 208 |
| PagI | TCATGA | 1 cut(s) | 46 |
| PctI | GAATGC | 1 cut(s) | 206 |
| PpuMI | RGGWCCY | 1 cut(s) | 309 |
| Psp5II | RGGWCCY | 1 cut(s) | 309 |
| Psp6I | CCWGG | 1 cut(s) | 312 |
| PspGI | CCWGG | 1 cut(s) | 312 |
| PspN4I | GGNNCC | 2 cut(s) | 310, 311 |
| PspPI | GGNCC | 1 cut(s) | 309 |
| PspPPI | RGGWCCY | 1 cut(s) | 309 |
| PstI | CTGCAG | 1 cut(s) | 107 |
| RseI | CAYNNNNRTG | 1 cut(s) | 182 |
| SaqAI | TTAA | 3 cut(s) | 255, 270, 321 |
| Sau3AI | GATC | 2 cut(s) | 49, 223 |
| Sau96I | GGNCC | 1 cut(s) | 309 |
| ScrFI | CCNGG | 2 cut(s) | 262, 314 |
| SetI | ASST | 5 cut(s) | 58, 66, 100, 144, 339 |
| SfcI | CTRYAG | 1 cut(s) | 103 |
| SinI | GGWCC | 1 cut(s) | 309 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 182 |
| Sse9I | AATT | 4 cut(s) | 219, 248, 266, 284 |
| SspMI | CTAG | 1 cut(s) | 53 |
| StyD4I | CCNGG | 2 cut(s) | 260, 312 |
| TaqI | TCGA | 1 cut(s) | 136 |
| TasI | AATT | 4 cut(s) | 219, 248, 266, 284 |
| Tru1I | TTAA | 3 cut(s) | 255, 270, 321 |
| Tru9I | TTAA | 3 cut(s) | 255, 270, 321 |
| TscAI | CASTG | 2 cut(s) | 112, 295 |
| TspDTI | ATGAA | 3 cut(s) | 35, 62, 104 |
| TspGWI | ACGGA | 1 cut(s) | 137 |
| TspRI | CASTG | 2 cut(s) | 112, 295 |
| VpaK11BI | GGWCC | 1 cut(s) | 309 |
| XapI | RAATTY | 1 cut(s) | 266 |
| XspI | CTAG | 1 cut(s) | 53 |
| Zsp2I | ATGCAT | 1 cut(s) | 208 |