E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD05G1232900.v1.1 |
| rosa_chinensis | RchiOBHm_Chr1g0336021 RchiOBHm_Chr5g0067541 |
| rosa_multiflora | Rmu_sc0000312.1_g000019 |
| rosa_roxburghii | Rroxscaffold_2G00153200 Rroxscaffold_4G00289060 Rroxscaffold_6G00420680 |
| rosa_rugosa | Rorug01G0072300 Rorug02G0054200 Rorug07G0150000 |
| rosa_samantha | Rh1AG006200 Rh2CG362300 Rh4AG348700 Rh4DG351200 Rh6DG149000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 254 |
| AgsI | TTSAA | 2 cut(s) | 189, 330 |
| AjnI | CCWGG | 1 cut(s) | 300 |
| AluBI | AGCT | 4 cut(s) | 44, 52, 86, 130 |
| AluI | AGCT | 4 cut(s) | 44, 52, 86, 130 |
| ApoI | RAATTY | 1 cut(s) | 254 |
| AspS9I | GGNCC | 1 cut(s) | 297 |
| AsuC2I | CCSGG | 1 cut(s) | 250 |
| AsuHPI | GGTGA | 2 cut(s) | 8, 213 |
| AvaII | GGWCC | 1 cut(s) | 297 |
| BccI | CCATC | 1 cut(s) | 232 |
| BciT130I | CCWGG | 1 cut(s) | 302 |
| BcnI | CCSGG | 1 cut(s) | 250 |
| BfaI | CTAG | 1 cut(s) | 41 |
| BfmI | CTRYAG | 1 cut(s) | 91 |
| Bme1390I | CCNGG | 2 cut(s) | 250, 302 |
| Bme18I | GGWCC | 1 cut(s) | 297 |
| BmgT120I | GGNCC | 1 cut(s) | 297 |
| BmiI | GGNNCC | 2 cut(s) | 298, 299 |
| BmrFI | CCNGG | 2 cut(s) | 250, 302 |
| BpuMI | CCSGG | 1 cut(s) | 250 |
| BsaBI | GATNNNNATC | 1 cut(s) | 311 |
| BsaJI | CCNNGG | 1 cut(s) | 300 |
| BsaWI | WCCGGW | 1 cut(s) | 21 |
| Bse1I | ACTGG | 1 cut(s) | 283 |
| Bse8I | GATNNNNATC | 1 cut(s) | 311 |
| BseBI | CCWGG | 1 cut(s) | 302 |
| BseDI | CCNNGG | 1 cut(s) | 300 |
| BseJI | GATNNNNATC | 1 cut(s) | 311 |
| BseMII | CTCAG | 1 cut(s) | 282 |
| BseNI | ACTGG | 1 cut(s) | 283 |
| BsiSI | CCGG | 2 cut(s) | 22, 249 |
| BslFI | GGGAC | 1 cut(s) | 310 |
| BsmFI | GGGAC | 1 cut(s) | 310 |
| BsmI | GAATGC | 1 cut(s) | 194 |
| Bsp143I | GATC | 2 cut(s) | 37, 211 |
| BspCNI | CTCAG | 1 cut(s) | 283 |
| BspHI | TCATGA | 1 cut(s) | 34 |
| BspLI | GGNNCC | 2 cut(s) | 298, 299 |
| BspMAI | CTGCAG | 1 cut(s) | 95 |
| BsrI | ACTGG | 1 cut(s) | 283 |
| BssECI | CCNNGG | 1 cut(s) | 300 |
| BssMI | GATC | 2 cut(s) | 37, 211 |
| Bst2UI | CCWGG | 1 cut(s) | 302 |
| BstDEI | CTNAG | 1 cut(s) | 291 |
| BstKTI | GATC | 2 cut(s) | 40, 214 |
| BstMBI | GATC | 2 cut(s) | 37, 211 |
| BstNI | CCWGG | 1 cut(s) | 302 |
| BstSCI | CCNGG | 2 cut(s) | 248, 300 |
| BstSFI | CTRYAG | 1 cut(s) | 91 |
| BtsI | GCAGTG | 1 cut(s) | 100 |
| BtsIMutI | CAGTG | 2 cut(s) | 100, 276 |
| CciI | TCATGA | 1 cut(s) | 34 |
| Cfr13I | GGNCC | 1 cut(s) | 297 |
| CviAII | CATG | 2 cut(s) | 35, 104 |
| CviJI | RGCY | 7 cut(s) | 44, 52, 67, 78, 86, 130, 232 |
| CviKI_1 | RGCY | 7 cut(s) | 44, 52, 67, 78, 86, 130, 232 |
| DdeI | CTNAG | 1 cut(s) | 291 |
| DpnI | GATC | 2 cut(s) | 39, 213 |
| DpnII | GATC | 2 cut(s) | 37, 211 |
| Eco32I | GATATC | 1 cut(s) | 219 |
| Eco47I | GGWCC | 1 cut(s) | 297 |
| EcoO109I | RGGNCCY | 1 cut(s) | 297 |
| EcoRII | CCWGG | 1 cut(s) | 300 |
| EcoRV | GATATC | 1 cut(s) | 219 |
| EcoT22I | ATGCAT | 1 cut(s) | 196 |
| FaeI | CATG | 2 cut(s) | 38, 107 |
| FaiI | YATR | 7 cut(s) | 36, 56, 63, 105, 170, 201, 340 |
| FaqI | GGGAC | 1 cut(s) | 310 |
| FatI | CATG | 2 cut(s) | 34, 103 |
| FspBI | CTAG | 1 cut(s) | 41 |
| HapII | CCGG | 2 cut(s) | 22, 249 |
| Hin1II | CATG | 2 cut(s) | 38, 107 |
| HpaII | CCGG | 2 cut(s) | 22, 249 |
| HphI | GGTGA | 2 cut(s) | 8, 213 |
| Hpy188I | TCNGA | 3 cut(s) | 216, 264, 292 |
| Hpy188III | TCNNGA | 2 cut(s) | 35, 125 |
| HpyCH4V | TGCA | 2 cut(s) | 93, 194 |
| HpyF3I | CTNAG | 1 cut(s) | 291 |
| Hsp92II | CATG | 2 cut(s) | 38, 107 |
| KflI | GGGWCCC | 1 cut(s) | 297 |
| Kzo9I | GATC | 2 cut(s) | 37, 211 |
| LpnPI | CCDG | 6 cut(s) | 35, 81, 262, 264, 287, 314 |
| MaeI | CTAG | 1 cut(s) | 41 |
| MalI | GATC | 2 cut(s) | 39, 213 |
| MboI | GATC | 2 cut(s) | 37, 211 |
| MboII | GAAGA | 1 cut(s) | 113 |
| MluCI | AATT | 5 cut(s) | 10, 207, 236, 254, 272 |
| MnlI | CCTC | 4 cut(s) | 29, 137, 286, 316 |
| Mph1103I | ATGCAT | 1 cut(s) | 196 |
| MseI | TTAA | 4 cut(s) | 9, 243, 258, 309 |
| MslI | CAYNNNNRTG | 1 cut(s) | 170 |
| MspI | CCGG | 2 cut(s) | 22, 249 |
| MspR9I | CCNGG | 2 cut(s) | 250, 302 |
| Mva1269I | GAATGC | 1 cut(s) | 194 |
| MvaI | CCWGG | 1 cut(s) | 302 |
| NciI | CCSGG | 1 cut(s) | 250 |
| NdeII | GATC | 2 cut(s) | 37, 211 |
| NlaIII | CATG | 2 cut(s) | 38, 107 |
| NlaIV | GGNNCC | 2 cut(s) | 298, 299 |
| NsiI | ATGCAT | 1 cut(s) | 196 |
| PagI | TCATGA | 1 cut(s) | 34 |
| PctI | GAATGC | 1 cut(s) | 194 |
| PpuMI | RGGWCCY | 1 cut(s) | 297 |
| Psp5II | RGGWCCY | 1 cut(s) | 297 |
| Psp6I | CCWGG | 1 cut(s) | 300 |
| PspGI | CCWGG | 1 cut(s) | 300 |
| PspN4I | GGNNCC | 2 cut(s) | 298, 299 |
| PspPI | GGNCC | 1 cut(s) | 297 |
| PspPPI | RGGWCCY | 1 cut(s) | 297 |
| PstI | CTGCAG | 1 cut(s) | 95 |
| RseI | CAYNNNNRTG | 1 cut(s) | 170 |
| SaqAI | TTAA | 4 cut(s) | 9, 243, 258, 309 |
| Sau3AI | GATC | 2 cut(s) | 37, 211 |
| Sau96I | GGNCC | 1 cut(s) | 297 |
| ScrFI | CCNGG | 2 cut(s) | 250, 302 |
| SetI | ASST | 7 cut(s) | 8, 21, 46, 54, 88, 132, 327 |
| SfcI | CTRYAG | 1 cut(s) | 91 |
| SinI | GGWCC | 1 cut(s) | 297 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 170 |
| Sse9I | AATT | 5 cut(s) | 10, 207, 236, 254, 272 |
| SspMI | CTAG | 1 cut(s) | 41 |
| StyD4I | CCNGG | 2 cut(s) | 248, 300 |
| TaqI | TCGA | 1 cut(s) | 124 |
| TasI | AATT | 5 cut(s) | 10, 207, 236, 254, 272 |
| Tru1I | TTAA | 4 cut(s) | 9, 243, 258, 309 |
| Tru9I | TTAA | 4 cut(s) | 9, 243, 258, 309 |
| TscAI | CASTG | 2 cut(s) | 100, 283 |
| TspDTI | ATGAA | 3 cut(s) | 23, 50, 92 |
| TspGWI | ACGGA | 1 cut(s) | 125 |
| TspRI | CASTG | 2 cut(s) | 100, 283 |
| VpaK11BI | GGWCC | 1 cut(s) | 297 |
| XapI | RAATTY | 1 cut(s) | 254 |
| XspI | CTAG | 1 cut(s) | 41 |
| Zsp2I | ATGCAT | 1 cut(s) | 196 |