Rroxscaffold_4G00289060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016414
Physical Location & Seq
Reverse (-)
9676816 .. 9693156
16341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289060.1

Sequence Viewer

Length: 288 bp
ATGCGTGGAGAGACATGTATTTATAGTGTGGGGACGGGCTTGTCACCCCTTTGCTTCCAATGTGAGACTAGTCGTGGTCCACCCGATACCACTAAGTTCCCAATATCGCCCCGAGGGGCCACGGTCTCTCAATCGATCCCAAATCCTATATCGCAAATCGATCCCAAATCCAGCCATCCAGGTACTCACCATACTCTTCCGCCGGAGTCTCACAGCCTCACCGTACTCTTCCAAGTTCCGGCCATAGTCCGACTCTCTCTATTTCGGGCTTCAAGCTTTAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.19

Weight (kDa)

8.64

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 40
AciI CCGC 1 cut(s) 200
AclWI GGATC 2 cut(s) 130, 155
AcoI YGGCCR 1 cut(s) 240
AfaI GTAC 2 cut(s) 184, 225
AfiI CCNNNNNNNGG 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 14
AgsI TTSAA 1 cut(s) 273
AhlI ACTAGT 1 cut(s) 68
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 1 cut(s) 276
AluI AGCT 1 cut(s) 276
Alw26I GTCTC 4 cut(s) 5, 59, 130, 213
AlwI GGATC 2 cut(s) 130, 155
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 2 cut(s) 117, 240
AspS9I GGNCC 2 cut(s) 77, 117
AsuHPI GGTGA 3 cut(s) 36, 179, 211
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 1 cut(s) 77
BccI CCATC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 180
BcoDI GTCTC 4 cut(s) 5, 59, 130, 213
BcuI ACTAGT 1 cut(s) 68
BfaI CTAG 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 77
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 2 cut(s) 77, 117
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 180
Bsa29I ATCGAT 2 cut(s) 134, 159
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 2 cut(s) 112, 120
Bsc4I CCNNNNNNNGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 180
BseCI ATCGAT 2 cut(s) 134, 159
BseDI CCNNGG 2 cut(s) 112, 120
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 238
BshFI GGCC 2 cut(s) 119, 242
BshVI ATCGAT 2 cut(s) 134, 159
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 2 cut(s) 203, 239
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 4 cut(s) 5, 59, 130, 213
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 2 cut(s) 119, 242
Bso31I GGTCTC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 111
Bsp143I GATC 2 cut(s) 135, 160
BspACI CCGC 1 cut(s) 200
BspANI GGCC 2 cut(s) 119, 242
BspDI ATCGAT 2 cut(s) 134, 159
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 2 cut(s) 130, 155
BspTNI GGTCTC 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 112, 120
BssMI GATC 2 cut(s) 135, 160
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 124, 223
Bst6I CTCTTC 2 cut(s) 201, 233
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 2 cut(s) 138, 163
BstMAI GTCTC 4 cut(s) 5, 59, 130, 213
BstMBI GATC 2 cut(s) 135, 160
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 178
Bsu15I ATCGAT 2 cut(s) 134, 159
BsuRI GGCC 2 cut(s) 119, 242
BsuTUI ATCGAT 2 cut(s) 134, 159
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 77, 117
ClaI ATCGAT 2 cut(s) 134, 159
Csp6I GTAC 2 cut(s) 183, 224
CviAII CATG 1 cut(s) 15
CviJI RGCY 7 cut(s) 39, 119, 174, 216, 242, 269, 276
CviKI_1 RGCY 7 cut(s) 39, 119, 174, 216, 242, 269, 276
CviQI GTAC 2 cut(s) 183, 224
DdeI CTNAG 1 cut(s) 93
DpnI GATC 2 cut(s) 137, 162
DpnII GATC 2 cut(s) 135, 160
DrdI GACNNNNNNGTC 1 cut(s) 40
DseDI GACNNNNNNGTC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 2 cut(s) 201, 233
EarI CTCTTC 2 cut(s) 201, 233
EciI GGCGGA 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 178
FaeI CATG 1 cut(s) 18
FaiI YATR 5 cut(s) 16, 24, 149, 192, 245
FaqI GGGAC 1 cut(s) 46
FatI CATG 1 cut(s) 14
FokI GGATG 1 cut(s) 162
FspBI CTAG 1 cut(s) 69
HaeIII GGCC 2 cut(s) 119, 242
HapII CCGG 2 cut(s) 203, 239
Hin1II CATG 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 2 cut(s) 206, 252
HpaII CCGG 2 cut(s) 203, 239
HphI GGTGA 3 cut(s) 36, 179, 211
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 124, 223
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 1 cut(s) 18
Kzo9I GATC 2 cut(s) 135, 160
LpnPI CCDG 5 cut(s) 165, 184, 192, 216, 252
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 42
MalI GATC 2 cut(s) 137, 162
MboI GATC 2 cut(s) 135, 160
MboII GAAGA 2 cut(s) 188, 220
MlyI GAGTC 2 cut(s) 215, 246
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 2 cut(s) 107, 227
MseI TTAA 2 cut(s) 279, 286
MspI CCGG 2 cut(s) 203, 239
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
NdeII GATC 2 cut(s) 135, 160
NlaIII CATG 1 cut(s) 18
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 42
NspI RCATGY 1 cut(s) 18
PciI ACATGT 1 cut(s) 14
PleI GAGTC 2 cut(s) 214, 246
PpsI GAGTC 2 cut(s) 214, 246
PscI ACATGT 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 77, 117
RsaI GTAC 2 cut(s) 184, 225
RsaNI GTAC 2 cut(s) 183, 224
SaqAI TTAA 2 cut(s) 279, 286
Sau3AI GATC 2 cut(s) 135, 160
Sau96I GGNCC 2 cut(s) 77, 117
SchI GAGTC 2 cut(s) 215, 246
ScrFI CCNGG 1 cut(s) 180
SetI ASST 2 cut(s) 184, 278
SinI GGWCC 1 cut(s) 77
SpeI ACTAGT 1 cut(s) 68
SsiI CCGC 1 cut(s) 200
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 2 cut(s) 124, 223
TaqI TCGA 2 cut(s) 134, 159
Tru1I TTAA 2 cut(s) 279, 286
Tru9I TTAA 2 cut(s) 279, 286
TseFI GTSAC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 77
XceI RCATGY 1 cut(s) 18
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.