Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0016414

Physical Location & Seq

Genomic Coordinates Reverse (-)

856046 .. 861025

Gene Structure 4980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG006200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAATGGTGCAGCCTCCAGTCTAAACTTCATGATCTAGCTATTCAGCTCATACTTCATAAGCCTGTGAAAAGCCCAATAGCTATCTACAGTGATATTCATGGACAATCTCATTATCTTCGAGAGCTTTTCCATAGTGGAGGAAAGCTCAAGCCTAGTGGAAAGGATGTTAGTGTGACCAGGAAGAACAAATTGCAGTACTTCCATGTAACTGCTGATTATAAACTTAATCTGACAGAGAGGACCAAAGATTGCTGCAGAAACTTGGTTGCGGCGAGAGATCAAAGAGCTTTTGAAAAAGGCAAGCTCCTTATCACAGTTGGTGAGGAATCTGCTGCATTGAACCGAGAGCTCCAGTTATTGGAACAACAGTCTGCTTCTAGTGACCGTTTATCTGTGCTTGTCAATGAGACATTGCAGTTATATGACCGAAACTCTTTTCACGAGATGTTCCAGGATATGATTAAAACATCATCACAACTTGGGACGAAAACAGCAAAGCTGAAGACTAGAAAGGCTGAAGAAGCGAAACAGAATAAGATAGATAAGATCTACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000444 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000818 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0008104 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034501 GO:0034502 GO:0034508 GO:0034613 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0051179 GO:0051276 GO:0051382 GO:0051383 GO:0051641 GO:0065003 GO:0065004 GO:0070013 GO:0070727 GO:0070925 GO:0071459 GO:0071824 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mis12

Protein Analysis

186

Amino Acids

21.33

Weight (kDa)

9.36

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016414)

Species	Orthologous Gene IDs
malus_domestica	MD05G1232900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336021 RchiOBHm_Chr5g0067541
rosa_multiflora	Rmu_sc0000312.1_g000019
rosa_roxburghii	Rroxscaffold_2G00153200 Rroxscaffold_4G00289060 Rroxscaffold_6G00420680
rosa_rugosa	Rorug01G0072300 Rorug02G0054200 Rorug07G0150000
rosa_samantha	Rh1AG006200 Rh2CG362300 Rh4AG348700 Rh4DG351200 Rh6DG149000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AccB7I	CCANNNNNTGG	1 cut(s)	361
AciI	CCGC	1 cut(s)	272
AcuI	CTGAAG	2 cut(s)	524, 540
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	2 cut(s)	296, 343
AjnI	CCWGG	2 cut(s)	179, 453
AluBI	AGCT	9 cut(s)	41, 49, 83, 127, 148, 290, 307, 352, 502
AluI	AGCT	9 cut(s)	41, 49, 83, 127, 148, 290, 307, 352, 502
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	404
ApeKI	GCWGC	3 cut(s)	12, 255, 335
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	354
BauI	CACGAG	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	24, 242, 322
BciT130I	CCWGG	2 cut(s)	181, 455
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	4 cut(s)	38, 156, 381, 510
BfmI	CTRYAG	2 cut(s)	88, 256
BglII	AGATCT	1 cut(s)	549
BisI	GCNGC	4 cut(s)	13, 256, 273, 336
BlsI	GCNGC	4 cut(s)	14, 257, 274, 337
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	2 cut(s)	181, 455
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	181, 455
BpiI	GAAGAC	1 cut(s)	512
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BpmI	CTGGAG	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	2 cut(s)	19, 355
Bse3DI	GCAATG	1 cut(s)	413
BseBI	CCWGG	2 cut(s)	181, 455
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMI	GCAATG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	19, 355
BseXI	GCAGC	3 cut(s)	24, 242, 322
BsgI	GTGCAG	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	34, 280, 549
BspACI	CCGC	1 cut(s)	272
BspHI	TCATGA	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	19, 355
BssMI	GATC	3 cut(s)	34, 280, 549
BssSI	CACGAG	1 cut(s)	443
Bst2BI	CACGAG	1 cut(s)	443
Bst2UI	CCWGG	2 cut(s)	181, 455
Bst4CI	ACNGT	4 cut(s)	92, 319, 372, 389
BstC8I	GCNNGC	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	3 cut(s)	37, 283, 552
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	3 cut(s)	34, 280, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstNI	CCWGG	2 cut(s)	181, 455
BstSCI	CCNGG	2 cut(s)	179, 453
BstSFI	CTRYAG	2 cut(s)	88, 256
BstV1I	GCAGC	3 cut(s)	24, 242, 322
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	1 cut(s)	549
BstYI	RGATCY	1 cut(s)	549
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	305
CciI	TCATGA	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	199
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviAII	CATG	3 cut(s)	32, 101, 206
CviQI	GTAC	1 cut(s)	199
DpnI	GATC	3 cut(s)	36, 282, 551
DpnII	GATC	3 cut(s)	34, 280, 549
Ecl136II	GAGCTC	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	2 cut(s)	524, 540
EcoICRI	GAGCTC	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	179, 453
EcoT38I	GRGCYC	1 cut(s)	354
FaeI	CATG	3 cut(s)	35, 104, 209
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	3 cut(s)	31, 100, 205
Fnu4HI	GCNGC	4 cut(s)	13, 256, 273, 336
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	4 cut(s)	13, 256, 273, 336
FspBI	CTAG	4 cut(s)	38, 156, 381, 510
GluI	GCNGC	4 cut(s)	13, 256, 273, 336
GsuI	CTGGAG	1 cut(s)	338
Hin1II	CATG	3 cut(s)	35, 104, 209
HinfI	GANTC	1 cut(s)	329
HphI	GGTGA	1 cut(s)	335
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	3 cut(s)	32, 122, 443
HpyCH4III	ACNGT	4 cut(s)	92, 319, 372, 389
HpyCH4V	TGCA	5 cut(s)	12, 196, 258, 338, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
Hsp92II	CATG	3 cut(s)	35, 104, 209
Kzo9I	GATC	3 cut(s)	34, 280, 549
LmnI	GCTCC	2 cut(s)	312, 357
LpnPI	CCDG	7 cut(s)	32, 78, 166, 193, 368, 440, 467
Lsp1109I	GCAGC	3 cut(s)	24, 242, 322
MaeI	CTAG	4 cut(s)	38, 156, 381, 510
MaeIII	GTNAC	3 cut(s)	175, 208, 383
MalI	GATC	3 cut(s)	36, 282, 551
MboI	GATC	3 cut(s)	34, 280, 549
MboII	GAAGA	4 cut(s)	110, 196, 517, 533
MflI	RGATCY	1 cut(s)	549
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	1 cut(s)	191
MnlI	CCTC	4 cut(s)	26, 134, 234, 319
MseI	TTAA	2 cut(s)	228, 465
MspR9I	CCNGG	2 cut(s)	181, 455
MvaI	CCWGG	2 cut(s)	181, 455
MwoI	GCNNNNNNNGC	1 cut(s)	524
NdeII	GATC	3 cut(s)	34, 280, 549
NlaIII	CATG	3 cut(s)	35, 104, 209
NmuCI	GTSAC	2 cut(s)	175, 383
PagI	TCATGA	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	329
PflMI	CCANNNNNTGG	1 cut(s)	361
PfoI	TCCNGGA	1 cut(s)	453
PkrI	GCNGC	4 cut(s)	14, 257, 274, 337
PsiI	TTATAA	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	179, 453
PspGI	CCWGG	2 cut(s)	179, 453
PspPI	GGNCC	1 cut(s)	243
PstI	CTGCAG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	549
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	228, 465
SatI	GCNGC	4 cut(s)	13, 256, 273, 336
Sau3AI	GATC	3 cut(s)	34, 280, 549
Sau96I	GGNCC	1 cut(s)	243
ScaI	AGTACT	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	181, 455
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	9 cut(s)	43, 51, 85, 129, 150, 292, 309, 354, 504
SfcI	CTRYAG	2 cut(s)	88, 256
SinI	GGWCC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	4 cut(s)	38, 156, 381, 510
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	2 cut(s)	179, 453
TaaI	ACNGT	4 cut(s)	92, 319, 372, 389
TaqI	TCGA	1 cut(s)	121
TaqII	GACCGA	1 cut(s)	444
TasI	AATT	1 cut(s)	191
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	228, 465
Tru9I	TTAA	2 cut(s)	228, 465
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	2 cut(s)	175, 383
TseI	GCWGC	3 cut(s)	12, 255, 335
Tsp45I	GTSAC	2 cut(s)	175, 383
TspDTI	ATGAA	3 cut(s)	20, 47, 89
TspRI	CASTG	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	243
XspI	CTAG	4 cut(s)	38, 156, 381, 510
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.