Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000312.1

Orthogroup ID

OG0016414

Physical Location & Seq

Genomic Coordinates Forward (+)

84321 .. 89064

Gene Structure 4744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000312.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atggccgccatcacgctcctcgcccttgcaaacggtgcgccagacatcttctattttgtcgcggcagcaactaccgaaacgcctgtgaaaagcccaatagctatctgcagcgatattcatggacaatctcatcatcttcgagagcttttccgtagtggaggaaagatcggtaatatatgcaagggtcatggatattcgaaacaagctgacctattcagaaggtatcccgtttcgccgtcactctcagttcgtcaccgtgcctccagcgtcgggccttcgtgcgcggcgctcctccgcttggctgtgtcaccacgactctctctctctctgagcgactctgcctcagtctccctctgctccaccgcgcccctccactccactgctccttcagtcctcttcagcctccagcccacgggttctctctctccggcacggaccctttccatctcagcctctctcctcgaccgtcgaggcgtcgacgaccctttctatactccactgagagaggctgagatggaaagggtccgtgccggagagagagaacccgtgggctggaggctgaagaggactgaaggagcagtggagtggaggggcgcggtggagcagagggagactgaggcagagtcgctcagagagagagaagaccggaaatctagtcttccagccacatgcccacatcctcagttctcagcttctcatcagctatgcctctcaactctcagtaggccacaatcccaattccaaaatcctatatcgcaaatcgatcccaaatccagctatccaggtactctccgtactcttccggcctggtctcacagtctctctttcaagttccagccacagtgtcgctttcgcataggtactcaccacagtctgactctctctatttcgagcttcaagctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

301

Amino Acids

32.92

Weight (kDa)

9.63

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016414)

Species	Orthologous Gene IDs
malus_domestica	MD05G1232900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336021 RchiOBHm_Chr5g0067541
rosa_multiflora	Rmu_sc0000312.1_g000019
rosa_roxburghii	Rroxscaffold_2G00153200 Rroxscaffold_4G00289060 Rroxscaffold_6G00420680
rosa_rugosa	Rorug01G0072300 Rorug02G0054200 Rorug07G0150000
rosa_samantha	Rh1AG006200 Rh2CG362300 Rh4AG348700 Rh4DG351200 Rh6DG149000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	477
AccII	CGCG	4 cut(s)	62, 284, 365, 596
AciI	CCGC	6 cut(s)	6, 62, 284, 295, 363, 596
AclWI	GGATC	1 cut(s)	758
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	4 cut(s)	372, 382, 581, 591
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	3 cut(s)	787, 796, 862
AfiI	CCNNNNNNNGG	4 cut(s)	270, 298, 412, 552
AgsI	TTSAA	2 cut(s)	829, 898
AjnI	CCWGG	2 cut(s)	781, 806
AluBI	AGCT	8 cut(s)	101, 145, 206, 692, 703, 777, 894, 901
AluI	AGCT	8 cut(s)	101, 145, 206, 692, 703, 777, 894, 901
Alw26I	GTCTC	4 cut(s)	352, 605, 816, 824
AlwI	GGATC	1 cut(s)	758
AoxI	GGCC	4 cut(s)	3, 272, 725, 804
ApeKI	GCWGC	2 cut(s)	65, 108
AspLEI	GCGC	5 cut(s)	40, 284, 289, 367, 596
AspS9I	GGNCC	3 cut(s)	272, 435, 523
AsuHPI	GGTGA	3 cut(s)	245, 300, 857
AsuII	TTCGAA	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	435, 523
BbsI	GAAGAC	2 cut(s)	648, 650
BbvI	GCAGC	2 cut(s)	77, 120
BccI	CCATC	3 cut(s)	17, 452, 508
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	2 cut(s)	783, 808
BciVI	GTATCC	1 cut(s)	234
BcoDI	GTCTC	4 cut(s)	352, 605, 816, 824
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	1 cut(s)	106
BfoI	RGCGCY	1 cut(s)	290
BfuI	GTATCC	1 cut(s)	234
BisI	GCNGC	5 cut(s)	6, 63, 66, 109, 285
BlsI	GCNGC	5 cut(s)	7, 64, 67, 110, 286
Bme1390I	CCNGG	2 cut(s)	783, 808
Bme18I	GGWCC	2 cut(s)	435, 523
BmgT120I	GGNCC	3 cut(s)	272, 435, 523
BmiI	GGNNCC	2 cut(s)	437, 524
BmrFI	CCNGG	2 cut(s)	783, 808
BpiI	GAAGAC	2 cut(s)	648, 650
BpmI	CTGGAG	3 cut(s)	247, 389, 574
Bpu14I	TTCGAA	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	762
BsaHI	GRCGYC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	816
BsaJI	CCNNGG	2 cut(s)	411, 546
BsaWI	WCCGGW	1 cut(s)	645
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	4 cut(s)	270, 298, 412, 552
BseBI	CCWGG	2 cut(s)	783, 808
BseCI	ATCGAT	1 cut(s)	762
BseDI	CCNNGG	2 cut(s)	411, 546
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	4 cut(s)	270, 298, 412, 552
BseRI	GAGGAG	3 cut(s)	8, 281, 449
BseXI	GCAGC	2 cut(s)	77, 120
Bsh1236I	CGCG	4 cut(s)	62, 284, 365, 596
Bsh1285I	CGRYCG	1 cut(s)	466
BshFI	GGCC	4 cut(s)	5, 274, 727, 806
BshVI	ATCGAT	1 cut(s)	762
BsiEI	CGRYCG	1 cut(s)	466
BsiSI	CCGG	4 cut(s)	428, 531, 646, 803
BslI	CCNNNNNNNGG	4 cut(s)	270, 298, 412, 552
BsmAI	GTCTC	4 cut(s)	352, 605, 816, 824
BsnI	GGCC	4 cut(s)	5, 274, 727, 806
Bso31I	GGTCTC	1 cut(s)	816
Bsp119I	TTCGAA	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	165, 763
BspACI	CCGC	6 cut(s)	6, 62, 284, 295, 363, 596
BspANI	GGCC	4 cut(s)	5, 274, 727, 806
BspDI	ATCGAT	1 cut(s)	762
BspFNI	CGCG	4 cut(s)	62, 284, 365, 596
BspLI	GGNNCC	2 cut(s)	437, 524
BspMAI	CTGCAG	1 cut(s)	110
BspPI	GGATC	1 cut(s)	758
BspT104I	TTCGAA	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	816
BssECI	CCNNGG	2 cut(s)	411, 546
BssMI	GATC	2 cut(s)	165, 763
BssNI	GRCGYC	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	783, 808
Bst4CI	ACNGT	6 cut(s)	35, 257, 467, 818, 843, 872
Bst6I	CTCTTC	3 cut(s)	401, 557, 804
BstACI	GRCGYC	1 cut(s)	474
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	197
BstDSI	CCRYGG	2 cut(s)	411, 546
BstF5I	GGATG	1 cut(s)	676
BstFNI	CGCG	4 cut(s)	62, 284, 365, 596
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	5 cut(s)	40, 284, 289, 367, 596
BstKTI	GATC	2 cut(s)	168, 766
BstMAI	GTCTC	4 cut(s)	352, 605, 816, 824
BstMBI	GATC	2 cut(s)	165, 763
BstMCI	CGRYCG	1 cut(s)	466
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	2 cut(s)	783, 808
BstNSI	RCATGY	1 cut(s)	672
BstSCI	CCNGG	2 cut(s)	781, 806
BstSFI	CTRYAG	1 cut(s)	106
BstUI	CGCG	4 cut(s)	62, 284, 365, 596
BstV1I	GCAGC	2 cut(s)	77, 120
BstV2I	GAAGAC	2 cut(s)	648, 650
Bsu15I	ATCGAT	1 cut(s)	762
BsuI	GTATCC	1 cut(s)	234
BsuRI	GGCC	4 cut(s)	5, 274, 727, 806
BsuTUI	ATCGAT	1 cut(s)	762
BtgI	CCRYGG	2 cut(s)	411, 546
BtsCI	GGATG	1 cut(s)	676
BtsI	GCAGTG	2 cut(s)	378, 585
BtsIMutI	CAGTG	4 cut(s)	378, 497, 585, 848
CfoI	GCGC	5 cut(s)	40, 284, 289, 367, 596
Cfr13I	GGNCC	3 cut(s)	272, 435, 523
ClaI	ATCGAT	1 cut(s)	762
CseI	GACGC	2 cut(s)	256, 463
Csp6I	GTAC	3 cut(s)	786, 795, 861
CviAII	CATG	3 cut(s)	119, 188, 669
CviQI	GTAC	3 cut(s)	786, 795, 861
DpnI	GATC	2 cut(s)	167, 765
DpnII	GATC	2 cut(s)	165, 763
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	401, 557, 804
EarI	CTCTTC	3 cut(s)	401, 557, 804
Eco31I	GGTCTC	1 cut(s)	816
Eco47I	GGWCC	2 cut(s)	435, 523
Eco57I	CTGAAG	4 cut(s)	372, 382, 581, 591
EcoRII	CCWGG	2 cut(s)	781, 806
FaeI	CATG	3 cut(s)	122, 191, 672
FaiI	YATR	9 cut(s)	120, 176, 178, 189, 492, 670, 706, 752, 857
FatI	CATG	3 cut(s)	118, 187, 668
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	5 cut(s)	6, 63, 66, 109, 285
FokI	GGATG	1 cut(s)	663
Fsp4HI	GCNGC	5 cut(s)	6, 63, 66, 109, 285
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	5 cut(s)	39, 283, 288, 366, 595
GluI	GCNGC	5 cut(s)	6, 63, 66, 109, 285
GsuI	CTGGAG	3 cut(s)	247, 389, 574
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	4 cut(s)	5, 274, 727, 806
HapII	CCGG	4 cut(s)	428, 531, 646, 803
HgaI	GACGC	2 cut(s)	256, 463
HhaI	GCGC	5 cut(s)	40, 284, 289, 367, 596
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	3 cut(s)	122, 191, 672
Hin6I	GCGC	5 cut(s)	38, 282, 287, 365, 594
HinP1I	GCGC	5 cut(s)	38, 282, 287, 365, 594
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	899
HinfI	GANTC	4 cut(s)	315, 335, 623, 877
HpaII	CCGG	4 cut(s)	428, 531, 646, 803
HphI	GGTGA	3 cut(s)	245, 300, 857
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	4 cut(s)	218, 330, 632, 876
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	4 cut(s)	272, 471, 479, 482
HpyAV	CCTTC	4 cut(s)	213, 285, 396, 566
HpyCH4III	ACNGT	6 cut(s)	35, 257, 467, 818, 843, 872
HpyCH4V	TGCA	3 cut(s)	29, 108, 180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	3 cut(s)	122, 191, 672
HspAI	GCGC	5 cut(s)	38, 282, 287, 365, 594
Kzo9I	GATC	2 cut(s)	165, 763
LmnI	GCTCC	6 cut(s)	21, 294, 362, 388, 575, 601
Lsp1109I	GCAGC	2 cut(s)	77, 120
MaeI	CTAG	1 cut(s)	654
MaeIII	GTNAC	3 cut(s)	237, 251, 306
MalI	GATC	2 cut(s)	167, 765
MboI	GATC	2 cut(s)	165, 763
MboII	GAAGA	7 cut(s)	40, 128, 388, 574, 650, 653, 791
MluCI	AATT	1 cut(s)	737
MlyI	GAGTC	4 cut(s)	309, 329, 632, 871
MseI	TTAA	1 cut(s)	904
MspI	CCGG	4 cut(s)	428, 531, 646, 803
MspR9I	CCNGG	2 cut(s)	783, 808
MteI	GCGCNGCGC	1 cut(s)	285
MvaI	CCWGG	2 cut(s)	783, 808
MvnI	CGCG	4 cut(s)	62, 284, 365, 596
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	2 cut(s)	165, 763
NlaIII	CATG	3 cut(s)	122, 191, 672
NlaIV	GGNNCC	2 cut(s)	437, 524
NmuCI	GTSAC	3 cut(s)	237, 251, 306
NspI	RCATGY	1 cut(s)	672
NspV	TTCGAA	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	7, 64, 67, 110, 286
PleI	GAGTC	4 cut(s)	309, 329, 631, 871
PpsI	GAGTC	4 cut(s)	309, 329, 631, 871
Psp6I	CCWGG	2 cut(s)	781, 806
PspGI	CCWGG	2 cut(s)	781, 806
PspN4I	GGNNCC	2 cut(s)	437, 524
PspPI	GGNCC	3 cut(s)	272, 435, 523
PstI	CTGCAG	1 cut(s)	110
RsaI	GTAC	3 cut(s)	787, 796, 862
RsaNI	GTAC	3 cut(s)	786, 795, 861
SalI	GTCGAC	1 cut(s)	476
SaqAI	TTAA	1 cut(s)	904
SatI	GCNGC	5 cut(s)	6, 63, 66, 109, 285
Sau3AI	GATC	2 cut(s)	165, 763
Sau96I	GGNCC	3 cut(s)	272, 435, 523
SchI	GAGTC	4 cut(s)	309, 329, 632, 871
ScrFI	CCNGG	2 cut(s)	783, 808
SfcI	CTRYAG	1 cut(s)	106
SfuI	TTCGAA	1 cut(s)	197
SgrDI	CGTCGACG	1 cut(s)	476
SinI	GGWCC	2 cut(s)	435, 523
Sse9I	AATT	1 cut(s)	737
SsiI	CCGC	6 cut(s)	6, 62, 284, 295, 363, 596
SspMI	CTAG	1 cut(s)	654
StyD4I	CCNGG	2 cut(s)	781, 806
TaaI	ACNGT	6 cut(s)	35, 257, 467, 818, 843, 872
TaqI	TCGA	7 cut(s)	139, 197, 462, 469, 477, 762, 890
TasI	AATT	1 cut(s)	737
TauI	GCSGC	3 cut(s)	8, 65, 287
Tru1I	TTAA	1 cut(s)	904
Tru9I	TTAA	1 cut(s)	904
TscAI	CASTG	4 cut(s)	385, 504, 585, 848
TseFI	GTSAC	3 cut(s)	237, 251, 306
TseI	GCWGC	2 cut(s)	65, 108
Tsp45I	GTSAC	3 cut(s)	237, 251, 306
TspDTI	ATGAA	1 cut(s)	107
TspGWI	ACGGA	4 cut(s)	140, 448, 515, 782
TspRI	CASTG	4 cut(s)	385, 504, 585, 848
VpaK11BI	GGWCC	2 cut(s)	435, 523
XceI	RCATGY	1 cut(s)	672
XmiI	GTMKAC	1 cut(s)	477
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.