Rroxscaffold_2G00153200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016414
Physical Location & Seq
Reverse (-)
89962792 .. 89969578
6787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153200.1

Sequence Viewer

Length: 237 bp
ATGGACAATCTCATCATCTTCGAGAGCTTTTCCGTAGTGGAGGAAAGAAAGAACACACAATACACTGGTGGTCAATCTGAGGGGACCCTGGCGATTAAAATCTTTTGGGAGGAGAGGCCGGCTTGGTTTGGGGAGTTCGGGATGGGTTGCGTTGGCGGCTCCGATCGCAGGTTGTCGGATGGGTTTGTCCGGATCAAATCGGAAGGTGATCTAGAGATGGGGTGGTTGGGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.82

Weight (kDa)

4.55

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 189
AciI CCGC 1 cut(s) 156
AclWI GGATC 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 168
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
AlwI GGATC 1 cut(s) 200
Aor13HI TCCGGA 1 cut(s) 189
AoxI GGCC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 84
BccI CCATC 3 cut(s) 136, 173, 211
BciT130I CCWGG 1 cut(s) 89
BfaI CTAG 2 cut(s) 212, 235
BfuAI ACCTGC 1 cut(s) 159
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 3 cut(s) 85, 86, 160
BmrFI CCNGG 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 98
BseAI TCCGGA 1 cut(s) 189
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 2 cut(s) 147, 184
BseJI GATNNNNATC 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 1 cut(s) 118
BsiEI CGRYCG 1 cut(s) 166
BsiSI CCGG 2 cut(s) 119, 190
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 1 cut(s) 118
Bsp13I TCCGGA 1 cut(s) 189
Bsp143I GATC 3 cut(s) 163, 192, 208
BspACI CCGC 1 cut(s) 156
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 70
BspEI TCCGGA 1 cut(s) 189
BspLI GGNNCC 3 cut(s) 85, 86, 160
BspMI ACCTGC 1 cut(s) 159
BspPI GGATC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 3 cut(s) 163, 192, 208
Bst2UI CCWGG 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 2 cut(s) 147, 184
BstKTI GATC 3 cut(s) 166, 195, 211
BstMBI GATC 3 cut(s) 163, 192, 208
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 156, 165
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BsuRI GGCC 1 cut(s) 118
BtsCI GGATG 2 cut(s) 147, 184
BtsIMutI CAGTG 1 cut(s) 63
BveI ACCTGC 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 84
CviJI RGCY 4 cut(s) 27, 118, 122, 159
CviKI_1 RGCY 4 cut(s) 27, 118, 122, 159
DdeI CTNAG 1 cut(s) 78
DpnI GATC 3 cut(s) 165, 194, 210
DpnII GATC 3 cut(s) 163, 192, 208
Eco47I GGWCC 1 cut(s) 84
EcoO109I RGGNCCY 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 87
FaqI GGGAC 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 157
FokI GGATG 2 cut(s) 154, 191
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 2 cut(s) 212, 235
GluI GCNGC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 118
HapII CCGG 2 cut(s) 119, 190
HpaII CCGG 2 cut(s) 119, 190
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 4 cut(s) 79, 163, 178, 202
Hpy188III TCNNGA 4 cut(s) 22, 139, 190, 212
HpyAV CCTTC 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 165
HpyF3I CTNAG 1 cut(s) 78
KflI GGGWCCC 1 cut(s) 84
Kpn2I TCCGGA 1 cut(s) 189
KroI GCCGGC 1 cut(s) 118
KroNI GCCGGC 1 cut(s) 120
Kzo9I GATC 3 cut(s) 163, 192, 208
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 6 cut(s) 51, 74, 101, 132, 154, 203
MaeI CTAG 2 cut(s) 212, 235
MalI GATC 3 cut(s) 165, 194, 210
MboI GATC 3 cut(s) 163, 192, 208
MboII GAAGA 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 4 cut(s) 34, 73, 103, 108
MroI TCCGGA 1 cut(s) 189
MroNI GCCGGC 1 cut(s) 118
MseI TTAA 1 cut(s) 96
MspI CCGG 2 cut(s) 119, 190
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 156, 165
NaeI GCCGGC 1 cut(s) 120
NdeII GATC 3 cut(s) 163, 192, 208
NgoMIV GCCGGC 1 cut(s) 118
NlaIV GGNNCC 3 cut(s) 85, 86, 160
PdiI GCCGGC 1 cut(s) 120
PkrI GCNGC 1 cut(s) 158
Ple19I CGATCG 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 3 cut(s) 85, 86, 160
PspPI GGNCC 1 cut(s) 84
PspPPI RGGWCCY 1 cut(s) 84
PsrI GAACNNNNNNTAC 2 cut(s) 44, 76
PvuI CGATCG 1 cut(s) 166
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 3 cut(s) 163, 192, 208
Sau96I GGNCC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 89
SetI ASST 3 cut(s) 29, 173, 208
SinI GGWCC 1 cut(s) 84
SsiI CCGC 1 cut(s) 156
SspMI CTAG 2 cut(s) 212, 235
StyD4I CCNGG 1 cut(s) 87
TaqI TCGA 1 cut(s) 21
TauI GCSGC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 70
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 84
XbaI TCTAGA 1 cut(s) 211
XspI CTAG 2 cut(s) 212, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.