RchiOBHm_Chr6g0250351

Belongs to the pyruvate kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
5886048 .. 5887690
1643 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22441

Sequence Viewer

Length: 201 bp
ATGCTTTCTGGTGAGTCAGCTATGGGCCAGTTCCCAGATAAGTCATTAGCTGTTCTCAGAAGTGTCAGTTTGAGGATCGAGAGGTGGTGGAGGGAAGAGAAACGTCATGAACCTATGTTACTCCCAGCTATTGGATCATCATTTTCAGACAGTATATCGGAGGAGCTTTGTATTTCTGCTGCCAAGATGGTCTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006629 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
Pfam Domains
Protein Families

Protein Analysis

66

Amino Acids

7.46

Weight (kDa)

5.72

Isoelectric Point (pI)

77.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 131
AclWI GGATC 2 cut(s) 83, 142
AfiI CCNNNNNNNGG 1 cut(s) 131
AluBI AGCT 4 cut(s) 20, 50, 128, 166
AluI AGCT 4 cut(s) 20, 50, 128, 166
AlwI GGATC 2 cut(s) 83, 142
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 23
BbvI GCAGC 1 cut(s) 166
BccI CCATC 1 cut(s) 181
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 166
BseYI CCCAGC 1 cut(s) 124
BshFI GGCC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 131
BsnI GGCC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 75, 134
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 69
BspHI TCATGA 1 cut(s) 106
BspPI GGATC 2 cut(s) 83, 142
BsrI ACTGG 1 cut(s) 28
BssMI GATC 2 cut(s) 75, 134
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 56
BstKTI GATC 2 cut(s) 78, 137
BstMBI GATC 2 cut(s) 75, 134
BstV1I GCAGC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 27
CciI TCATGA 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 25
CviAII CATG 1 cut(s) 107
CviJI RGCY 5 cut(s) 20, 27, 50, 128, 166
CviKI_1 RGCY 5 cut(s) 20, 27, 50, 128, 166
DdeI CTNAG 1 cut(s) 56
DpnI GATC 2 cut(s) 77, 136
DpnII GATC 2 cut(s) 75, 134
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
FaeI CATG 1 cut(s) 110
FaiI YATR 4 cut(s) 23, 108, 116, 155
FalI AAGNNNNNCTT 1 cut(s) 176
FatI CATG 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 180
GsaI CCCAGC 1 cut(s) 128
HaeIII GGCC 1 cut(s) 27
Hin1II CATG 1 cut(s) 110
HinfI GANTC 1 cut(s) 14
HphI GGTGA 1 cut(s) 23
Hpy188I TCNGA 3 cut(s) 59, 148, 160
Hpy188III TCNNGA 2 cut(s) 79, 107
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 103
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 1 cut(s) 110
Kzo9I GATC 2 cut(s) 75, 134
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 3 cut(s) 41, 48, 138
Lsp1109I GCAGC 1 cut(s) 166
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 117
MalI GATC 2 cut(s) 77, 136
MboI GATC 2 cut(s) 75, 134
MboII GAAGA 1 cut(s) 107
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 4 cut(s) 66, 75, 84, 154
NdeII GATC 2 cut(s) 75, 134
NlaIII CATG 1 cut(s) 110
PagI TCATGA 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 131
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 25
PsrI GAACNNNNNNTAC 2 cut(s) 102, 134
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 75, 134
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 23
SetI ASST 7 cut(s) 22, 52, 86, 106, 115, 130, 168
SgeI CNNG 7 cut(s) 21, 40, 47, 91, 119, 137, 196
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 78
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 123
Van91I CCANNNNNTGG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.