Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008159.1

Orthogroup ID

OG0011610

Physical Location & Seq

Genomic Coordinates Reverse (-)

74878 .. 75939

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008159.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgatctcatacttaagctttcattatattcaggattggttggacattgatttcgggattgctgaaggtgttgatttcattgctgtatcttttgtcaagtctgctgaagtgatcaatcaccttaaaagctatattgcagcacggtctcgcgatatttctgttgtggcaaagatagagagtattgactctctaaagaacttggaagagatcatccttgcatcagatggagcaatggtagcaagaggtgacctaggtgctcagataccattggaacaggtcccatcagcccagcaaaagattgttcaagtatgtcggcagctaaataagccagtcattgttgcttctcaactactcgaatctatgatcgagtatcctacacccactagagctgaagtggctgatgtttctaaagccgtgaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006629 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

140

Amino Acids

15.42

Weight (kDa)

4.95

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011610)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322031 RchiOBHm_Chr5g0027841 RchiOBHm_Chr5g0027851 RchiOBHm_Chr6g0250351
rosa_multiflora	Rmu_sc0002584.1_g000001 Rmu_sc0002584.1_g000002 Rmu_sc0008159.1_g000015 Rmu_sc0011777.1_g000007 Rmu_sc0011777.1_g000008
rosa_samantha	Rh1AG007800 Rh1AG048600 Rh2CG641700 Rh2DG692400 Rh4AG045500 Rh5AG178300 Rh5DG195900 Rh5DG196000 Rh7DG367300
rosa_wichuraiana	Rw5G026220 Rw7G041350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	150
AcuI	CTGAAG	3 cut(s)	84, 126, 411
AflII	CTTAAG	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	305
AluBI	AGCT	4 cut(s)	18, 129, 319, 389
AluI	AGCT	4 cut(s)	18, 129, 319, 389
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	137, 316
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
AspA2I	CCTAGG	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	110, 257
AvaII	GGWCC	1 cut(s)	277
AvrII	CCTAGG	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	149, 328
BccI	CCATC	2 cut(s)	218, 289
BceAI	ACGGC	1 cut(s)	398
BciVI	GTATCC	1 cut(s)	381
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	2 cut(s)	251, 384
BfrI	CTTAAG	1 cut(s)	13
BfuI	GTATCC	1 cut(s)	381
BisI	GCNGC	2 cut(s)	138, 317
BlnI	CCTAGG	1 cut(s)	250
BlsI	GCNGC	2 cut(s)	139, 318
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	279
BmsI	GCATC	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bse1I	ACTGG	1 cut(s)	329
Bse3DI	GCAATG	2 cut(s)	78, 237
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	210
BseMI	GCAATG	2 cut(s)	78, 237
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	149, 328
BseYI	CCCAGC	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	4 cut(s)	3, 111, 207, 363
Bsp68I	TCGCGA	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	279
BspTI	CTTAAG	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	150
BsrDI	GCAATG	2 cut(s)	78, 237
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	4 cut(s)	3, 111, 207, 363
BssT1I	CCWWGG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	198
BstAFI	CTTAAG	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	258
BstEII	GGTNACC	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	150
BstKTI	GATC	4 cut(s)	6, 114, 210, 366
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	4 cut(s)	3, 111, 207, 363
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 325, 395
BstPI	GGTNACC	1 cut(s)	245
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	149, 328
BsuI	GTATCC	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	210
BtuMI	TCGCGA	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	277
CviJI	RGCY	8 cut(s)	18, 129, 287, 319, 328, 389, 398, 413
CviKI_1	RGCY	8 cut(s)	18, 129, 287, 319, 328, 389, 398, 413
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	4 cut(s)	5, 113, 209, 365
DpnII	GATC	4 cut(s)	3, 111, 207, 363
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	250
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	3 cut(s)	84, 126, 411
Eco91I	GGTNACC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaiI	YATR	5 cut(s)	10, 27, 132, 310, 362
FaqI	GGGAC	1 cut(s)	263
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	138, 317
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	138, 317
FspBI	CTAG	2 cut(s)	251, 384
GluI	GCNGC	2 cut(s)	138, 317
GsaI	CCCAGC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	2 cut(s)	185, 356
HphI	GGTGA	2 cut(s)	110, 257
Hpy188I	TCNGA	2 cut(s)	223, 261
Hpy188III	TCNNGA	3 cut(s)	32, 55, 149
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	137, 218
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 325, 395
HpyF3I	CTNAG	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	3, 111, 207, 363
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	4 cut(s)	17, 260, 302, 342
Lsp1109I	GCAGC	2 cut(s)	149, 328
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	2 cut(s)	251, 384
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	4 cut(s)	5, 113, 209, 365
MboI	GATC	4 cut(s)	3, 111, 207, 363
MboII	GAAGA	1 cut(s)	215
MhlI	GDGCHC	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	2 cut(s)	236, 411
MseI	TTAA	2 cut(s)	14, 123
MspCI	CTTAAG	1 cut(s)	13
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	3 cut(s)	236, 325, 395
NdeII	GATC	4 cut(s)	3, 111, 207, 363
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	245
NruI	TCGCGA	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	2 cut(s)	139, 318
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PpuMI	RGGWCCY	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	277
PspEI	GGTNACC	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	277
PspPPI	RGGWCCY	1 cut(s)	277
RruI	TCGCGA	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	14, 123
SatI	GCNGC	2 cut(s)	138, 317
Sau3AI	GATC	4 cut(s)	3, 111, 207, 363
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	227
SinI	GGWCC	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SspMI	CTAG	2 cut(s)	251, 384
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	354, 366
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	2 cut(s)	14, 123
Tru9I	TTAA	2 cut(s)	14, 123
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	2 cut(s)	137, 316
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	11, 67
Vha464I	CTTAAG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	277
XmaJI	CCTAGG	1 cut(s)	250
XspI	CTAG	2 cut(s)	251, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.