Rh1AG007800

Belongs to the pyruvate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0011610
Physical Location & Seq
Reverse (-)
1190843 .. 1191683
841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG007800.1

Sequence Viewer

Length: 468 bp
ATGTATGATTTCCACTCAAAGGAAAATGGGGCTGAAGGTGTTGATTTCATTGCTGTATCTTTTGTCAAGTCTGCTGAAGTGATCAATCACCTTAAAAGCTATATTGCAGCACGGTCTCGCGATATTTCTGTTGTGGCAAAGATAGAGAGTATTGACTCTCTAAAGAACTTGGAAGAGATCATCCTTGCATCAGATGGAGCAATGGTAGCAAGAGCTATGGGCCAGTTCCCAGATAAGTCATTAGCTGTTCTCAGAAGTGTCAGTTTGAGGATCGAGAGGTGGTGGAGGGAAGAGAAACGTCATGAACCTATGTTACTCCCAGCTATTGGATCATCATTTTTAGACAGTATATCGGAGGAGCTTTGTATTTCTGCTGCCAAGATGGCTTTGGTAAATATGTTTGTGATTCAGCTGAAGGACTTGTCCAGTTGGTTGGTACTCTTTGTTCTGTGGTATGAAGCTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006629 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230
Pfam Domains
Protein Families
PK PK_C

Protein Analysis

155

Amino Acids

17.51

Weight (kDa)

5.64

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK PF00224 12 - 72 2.3e-13 Pyruvate kinase, barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 326
AccII CGCG 1 cut(s) 120
AclWI GGATC 2 cut(s) 278, 337
AcuI CTGAAG 3 cut(s) 54, 96, 434
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 2 cut(s) 19, 326
AluBI AGCT 7 cut(s) 99, 215, 245, 323, 361, 412, 461
AluI AGCT 7 cut(s) 99, 215, 245, 323, 361, 412, 461
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 2 cut(s) 278, 337
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 2 cut(s) 107, 374
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 80
BbvI GCAGC 2 cut(s) 119, 361
BccI CCATC 2 cut(s) 188, 376
BclI TGATCA 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 120
BglI GCCNNNNNGGC 1 cut(s) 383
BisI GCNGC 2 cut(s) 108, 375
BlsI GCNGC 2 cut(s) 109, 376
BmgT120I GGNCC 1 cut(s) 220
BmsI GCATC 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 326
Bse1I ACTGG 2 cut(s) 223, 426
Bse3DI GCAATG 2 cut(s) 48, 207
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 19, 326
BseMI GCAATG 2 cut(s) 48, 207
BseMII CTCAG 1 cut(s) 265
BseNI ACTGG 2 cut(s) 223, 426
BseRI GAGGAG 1 cut(s) 371
BseXI GCAGC 2 cut(s) 119, 361
BseYI CCCAGC 1 cut(s) 319
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 19, 326
BsmAI GTCTC 1 cut(s) 120
BsnI GGCC 1 cut(s) 222
Bso31I GGTCTC 1 cut(s) 120
Bsp143I GATC 4 cut(s) 81, 177, 270, 329
Bsp68I TCGCGA 1 cut(s) 120
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 264
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 1 cut(s) 301
BspPI GGATC 2 cut(s) 278, 337
BspTNI GGTCTC 1 cut(s) 120
BsrDI GCAATG 2 cut(s) 48, 207
BsrI ACTGG 2 cut(s) 223, 426
BssMI GATC 4 cut(s) 81, 177, 270, 329
Bst4CI ACNGT 2 cut(s) 114, 347
Bst6I CTCTTC 2 cut(s) 168, 285
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 1 cut(s) 251
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 4 cut(s) 84, 180, 273, 332
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 4 cut(s) 81, 177, 270, 329
BstMWI GCNNNNNNNGC 2 cut(s) 206, 383
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 119, 361
BstXI CCANNNNNNTGG 1 cut(s) 433
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 1 cut(s) 180
BtuMI TCGCGA 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 463
CciI TCATGA 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 437
CviAII CATG 1 cut(s) 302
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 1 cut(s) 251
DpnI GATC 4 cut(s) 83, 179, 272, 331
DpnII GATC 4 cut(s) 81, 177, 270, 329
Eam1104I CTCTTC 2 cut(s) 168, 285
EarI CTCTTC 2 cut(s) 168, 285
Eco31I GGTCTC 1 cut(s) 120
Eco57I CTGAAG 3 cut(s) 54, 96, 434
FaeI CATG 1 cut(s) 305
FaiI YATR 8 cut(s) 6, 102, 218, 303, 311, 350, 398, 456
FatI CATG 1 cut(s) 301
FbaI TGATCA 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 108, 375
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 108, 375
GluI GCNGC 2 cut(s) 108, 375
GsaI CCCAGC 1 cut(s) 323
HaeIII GGCC 1 cut(s) 222
Hin1II CATG 1 cut(s) 305
HinfI GANTC 2 cut(s) 155, 406
HphI GGTGA 1 cut(s) 80
Hpy188I TCNGA 3 cut(s) 193, 254, 355
Hpy188III TCNNGA 3 cut(s) 119, 274, 302
HpyAV CCTTC 2 cut(s) 29, 409
HpyCH4III ACNGT 2 cut(s) 114, 347
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 2 cut(s) 107, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 383
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 4 cut(s) 81, 177, 270, 329
LmnI GCTCC 2 cut(s) 197, 358
LpnPI CCDG 4 cut(s) 236, 243, 333, 439
Lsp1109I GCAGC 2 cut(s) 119, 361
LweI GCATC 1 cut(s) 197
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 312
MalI GATC 4 cut(s) 83, 179, 272, 331
MboI GATC 4 cut(s) 81, 177, 270, 329
MboII GAAGA 2 cut(s) 185, 302
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 4 cut(s) 261, 270, 279, 349
MseI TTAA 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 412
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 206, 383
NdeII GATC 4 cut(s) 81, 177, 270, 329
NlaIII CATG 1 cut(s) 305
NruI TCGCGA 1 cut(s) 120
PagI TCATGA 1 cut(s) 301
PfeI GAWTC 1 cut(s) 406
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 2 cut(s) 109, 376
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 319
PspPI GGNCC 1 cut(s) 220
PsrI GAACNNNNNNTAC 4 cut(s) 297, 329, 429, 461
PvuII CAGCTG 1 cut(s) 412
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 2 cut(s) 108, 375
Sau3AI GATC 4 cut(s) 81, 177, 270, 329
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 149
SfaNI GCATC 1 cut(s) 197
TaaI ACNGT 2 cut(s) 114, 347
TaiI ACGT 1 cut(s) 301
TaqI TCGA 1 cut(s) 273
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TseI GCWGC 2 cut(s) 107, 374
TspDTI ATGAA 2 cut(s) 37, 318
Van91I CCANNNNNTGG 1 cut(s) 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.