Rmu_sc0011777.1_g000007

Belongs to the pyruvate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011777.1
OG0011610
Physical Location & Seq
Reverse (-)
36806 .. 38968
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011777.1_g000007.1.cds

Sequence Viewer

Length: 282 bp
atgggccagttcccagataagtcatacctgggctataatagtgtcagtttgaggatcgagaggtggtggagggaagagaaacgtcatgaacctatgttactcccagctattggatcatcattttcagacagtatatcggaggagctttgtatttctgctgccaagatggatctgtcggtccatcagacgacgaagtcagctgcaaaccgtccacccaatgatcggtatacgacggttgaaaaccgtcgtctgacagcgtttcatcagacgacgcctcgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006629 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230
Pfam Domains
Protein Families
PK PK_C

Protein Analysis

93

Amino Acids

10.74

Weight (kDa)

8.93

Isoelectric Point (pI)

56.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 193
AccB7I CCANNNNNTGG 1 cut(s) 110
AccI GTMKAC 1 cut(s) 227
AclWI GGATC 3 cut(s) 62, 121, 177
AcyI GRCGYC 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 110, 222
AgsI TTSAA 1 cut(s) 239
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 3 cut(s) 107, 145, 200
AluI AGCT 3 cut(s) 107, 145, 200
AlwI GGATC 3 cut(s) 62, 121, 177
AoxI GGCC 1 cut(s) 4
ApeKI GCWGC 2 cut(s) 158, 200
AspS9I GGNCC 2 cut(s) 4, 178
AvaII GGWCC 1 cut(s) 178
BbvI GCAGC 2 cut(s) 145, 187
BccI CCATC 2 cut(s) 160, 189
BciT130I CCWGG 1 cut(s) 29
BisI GCNGC 2 cut(s) 159, 201
BlsI GCNGC 2 cut(s) 160, 202
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 4, 178
BmrFI CCNGG 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 222
Bse1I ACTGG 1 cut(s) 7
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 28
BseLI CCNNNNNNNGG 2 cut(s) 110, 222
BseNI ACTGG 1 cut(s) 7
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 2 cut(s) 145, 187
BseYI CCCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 110, 222
BsnI GGCC 1 cut(s) 6
Bsp143I GATC 4 cut(s) 54, 113, 169, 220
BspANI GGCC 1 cut(s) 6
BspHI TCATGA 1 cut(s) 85
BspPI GGATC 3 cut(s) 62, 121, 177
BsrI ACTGG 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 4 cut(s) 54, 113, 169, 220
BssNAI GTATAC 1 cut(s) 228
BssNI GRCGYC 1 cut(s) 272
Bst1107I GTATAC 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 4 cut(s) 131, 209, 235, 245
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 272
BstKTI GATC 4 cut(s) 57, 116, 172, 223
BstMBI GATC 4 cut(s) 54, 113, 169, 220
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 145, 187
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BstZ17I GTATAC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 6
CciI TCATGA 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 4, 178
CviAII CATG 1 cut(s) 86
CviJI RGCY 5 cut(s) 6, 33, 107, 145, 200
CviKI_1 RGCY 5 cut(s) 6, 33, 107, 145, 200
DpnI GATC 4 cut(s) 56, 115, 171, 222
DpnII GATC 4 cut(s) 54, 113, 169, 220
DrdI GACNNNNNNGTC 1 cut(s) 193
DseDI GACNNNNNNGTC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 89
FaiI YATR 6 cut(s) 25, 36, 87, 95, 134, 228
FatI CATG 1 cut(s) 85
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 2 cut(s) 159, 201
Fsp4HI GCNGC 2 cut(s) 159, 201
GluI GCNGC 2 cut(s) 159, 201
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 272
Hin1II CATG 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 212, 228
Hpy188I TCNGA 5 cut(s) 127, 139, 186, 252, 267
Hpy188III TCNNGA 2 cut(s) 58, 86
Hpy8I GTNNAC 2 cut(s) 212, 228
Hpy99I CGWCG 4 cut(s) 193, 235, 249, 274
HpyCH4III ACNGT 4 cut(s) 131, 209, 235, 245
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 203
HpySE526I ACGT 1 cut(s) 82
Hsp92I GRCGYC 1 cut(s) 272
Hsp92II CATG 1 cut(s) 89
Kzo9I GATC 4 cut(s) 54, 113, 169, 220
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 5 cut(s) 14, 20, 27, 41, 117
Lsp1109I GCAGC 2 cut(s) 145, 187
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 96
MalI GATC 4 cut(s) 56, 115, 171, 222
MboI GATC 4 cut(s) 54, 113, 169, 220
MboII GAAGA 1 cut(s) 86
MflI RGATCY 1 cut(s) 169
MnlI CCTC 4 cut(s) 45, 54, 63, 133
MspA1I CMGCKG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
NdeII GATC 4 cut(s) 54, 113, 169, 220
NlaIII CATG 1 cut(s) 89
PagI TCATGA 1 cut(s) 85
PflFI GACNNNGTC 1 cut(s) 193
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 2 cut(s) 160, 202
Psp6I CCWGG 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 1 cut(s) 27
PspPI GGNCC 2 cut(s) 4, 178
PsrI GAACNNNNNNTAC 2 cut(s) 81, 113
PsuI RGATCY 1 cut(s) 169
PsyI GACNNNGTC 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 200
SatI GCNGC 2 cut(s) 159, 201
Sau3AI GATC 4 cut(s) 54, 113, 169, 220
Sau96I GGNCC 2 cut(s) 4, 178
ScrFI CCNGG 1 cut(s) 29
SetI ASST 7 cut(s) 30, 65, 85, 94, 109, 147, 202
SgeI CNNG 8 cut(s) 19, 26, 40, 41, 70, 98, 116, 175
SinI GGWCC 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 27
TaaI ACNGT 4 cut(s) 131, 209, 235, 245
TaiI ACGT 1 cut(s) 85
TaqI TCGA 2 cut(s) 57, 277
TaqII GACCGA 1 cut(s) 166
TseI GCWGC 2 cut(s) 158, 200
TspDTI ATGAA 2 cut(s) 102, 251
Tth111I GACNNNGTC 1 cut(s) 193
Van91I CCANNNNNTGG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.